Package gov.nih.mipav.view.dialogs
Class JDialogColocalizationRegression
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.dialogs.JDialogScriptableBase
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- gov.nih.mipav.view.dialogs.JDialogColocalizationRegression
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- All Implemented Interfaces:
AlgorithmInterface
,ScriptableActionInterface
,DialogDefaultsInterface
,java.awt.event.ActionListener
,java.awt.event.FocusListener
,java.awt.event.ItemListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,javax.swing.RootPaneContainer
,javax.swing.WindowConstants
public class JDialogColocalizationRegression extends JDialogScriptableBase implements AlgorithmInterface
Dialog to get user input Calculate Pearson's correlation coefficient Calculate P value for this correlation coefficient Identify colocalized pixels Algorithms are executed in their own thread.- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
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Field Summary
Fields Modifier and Type Field Description private float
background1
DOCUMENT ME!private float
background2
DOCUMENT ME!private int
bin1
DOCUMENT ME!private javax.swing.JLabel
bin1Label
DOCUMENT ME!private javax.swing.JTextField
bin1Text
DOCUMENT ME!private int
bin2
DOCUMENT ME!private javax.swing.JLabel
bin2Label
DOCUMENT ME!private javax.swing.JTextField
bin2Text
DOCUMENT ME!private javax.swing.JCheckBox
blueCheckBox
DOCUMENT ME!private int
bottomPad
DOCUMENT ME!private float[]
buffer
DOCUMENT ME!private AlgorithmColocalizationRegression
colocalizationAlgo
DOCUMENT ME!private javax.swing.JCheckBox
colocCheckBox
DOCUMENT ME!private int
colorsPresent
DOCUMENT ME!private javax.swing.JComboBox
comboBoxCostFunct
DOCUMENT ME!private ViewJComponentEditImage
componentImage1
DOCUMENT ME!private ViewJComponentEditImage
componentImage2
DOCUMENT ME!private int
cost
DOCUMENT ME!private boolean
doColocWithThresholds
DOCUMENT ME!private boolean
doSecondIteration
DOCUMENT ME!private boolean
doVOISubtraction
DOCUMENT ME!private boolean
entireImage
DOCUMENT ME!private ModelImage
firstImage
DOCUMENT ME!private java.lang.String
firstName
DOCUMENT ME!private javax.swing.JCheckBox
greenCheckBox
DOCUMENT ME!private javax.swing.JComboBox
imageComboBox
DOCUMENT ME!private int
imageLength
DOCUMENT ME!private javax.swing.JLabel
labelCost
DOCUMENT ME!private javax.swing.JLabel
labelImage
DOCUMENT ME!private int
leftPad
DOCUMENT ME!private java.util.BitSet
mask
DOCUMENT ME!private javax.swing.JButton
maskButton
DOCUMENT ME!private java.lang.String
maskFileDir
DOCUMENT ME!private java.lang.String
maskFileName
DOCUMENT ME!private ModelImage
maskImage
DOCUMENT ME!private javax.swing.JRadioButton
maskRadio
DOCUMENT ME!private javax.swing.JTextField
maskText
DOCUMENT ME!private double
maxB
DOCUMENT ME!private double
maxG
DOCUMENT ME!private double
maxR
DOCUMENT ME!private double
minB
DOCUMENT ME!private double
minG
DOCUMENT ME!private double
minR
DOCUMENT ME!private int
nBoundingVOIs
DOCUMENT ME!(package private) float
point1
DOCUMENT ME!private javax.swing.JLabel
point1Label
DOCUMENT ME!private javax.swing.JTextField
point1Text
DOCUMENT ME!(package private) float
point2
DOCUMENT ME!private javax.swing.JLabel
point2Label
DOCUMENT ME!private javax.swing.JTextField
point2Text
DOCUMENT ME!private boolean
pointCalculation
DOCUMENT ME!private javax.swing.JCheckBox
pointCheckBox
DOCUMENT ME!private double
possibleInt2Values
DOCUMENT ME!private double
possibleIntValues
DOCUMENT ME!private javax.swing.JCheckBox
redCheckBox
DOCUMENT ME!private javax.swing.JCheckBox
regCheckBox
DOCUMENT ME!private boolean
register
DOCUMENT ME!private ModelImage
resultImage
DOCUMENT ME!private int
rightPad
DOCUMENT ME!private ModelImage
secondImage
DOCUMENT ME!private javax.swing.JCheckBox
secondIterationCheckBox
DOCUMENT ME!private java.lang.String
secondName
DOCUMENT ME!private static long
serialVersionUID
Use serialVersionUID for interoperability.private int
topPad
DOCUMENT ME!private ViewUserInterface
UI
DOCUMENT ME!private boolean
useBlue
DOCUMENT ME!private boolean
useGreen
DOCUMENT ME!private boolean
useRed
DOCUMENT ME!private javax.swing.JCheckBox
VOICheckBox
DOCUMENT ME!private javax.swing.JRadioButton
VOIRegions
DOCUMENT ME!private javax.swing.JRadioButton
wholeImage
DOCUMENT ME!private int
xDim
DOCUMENT ME!private int
yDim
DOCUMENT ME!private int
zDim
DOCUMENT ME!-
Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description JDialogColocalizationRegression()
Empty constructor needed for dynamic instantiation (used during scripting).JDialogColocalizationRegression(ModelImage firstImage)
Creates a new JDialogColocalizationRegression object.JDialogColocalizationRegression(java.awt.Frame theParentFrame, ModelImage im)
Creates new dialog.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.void
algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented.private javax.swing.JComboBox
buildComboBox(ModelImage image)
Builds a list of images.protected void
callAlgorithm()
DOCUMENT ME!protected void
doPostAlgorithmActions()
Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table).ModelImage
getResultImage()
Accessor that returns the image.private void
init()
Initializes GUI components and displays dialog.void
itemStateChanged(java.awt.event.ItemEvent event)
itemStateChanged.void
setBackground1(float background1)
DOCUMENT ME!void
setBackground2(float background2)
DOCUMENT ME!void
setBin1(int bin1)
DOCUMENT ME!void
setBin2(int bin2)
DOCUMENT ME!void
setBottomPad(int bottomPad)
DOCUMENT ME!void
setCost(int cost)
DOCUMENT ME!void
setDoColocWithThresholds(boolean doColocWithThresholds)
DOCUMENT ME!void
setDoSecondIteration(boolean doSecondIteration)
DOCUMENT ME!void
setDoVOISubtraction(boolean doVOISubtraction)
DOCUMENT ME!void
setEntireImage(boolean entireImage)
DOCUMENT ME!protected void
setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.void
setLeftPad(int leftPad)
DOCUMENT ME!void
setPoint1(float point1)
DOCUMENT ME!void
setPoint2(float point2)
DOCUMENT ME!void
setPointCalculation(boolean pointCalculation)
DOCUMENT ME!void
setRegister(boolean register)
DOCUMENT ME!void
setRightPad(int rightPad)
DOCUMENT ME!void
setSecondImage(ModelImage secondImage)
DOCUMENT ME!void
setTopPad(int topPad)
DOCUMENT ME!private boolean
setupMask()
DOCUMENT ME!boolean
setupMaskImage(ModelImage im)
DOCUMENT ME!void
setUseBlue(boolean useBlue)
DOCUMENT ME!void
setUseGreen(boolean useGreen)
DOCUMENT ME!void
setUseRed(boolean useRed)
DOCUMENT ME!private boolean
setVariables()
Use the GUI results to set up the variables needed to run the algorithm.protected void
storeParamsFromGUI()
Record the parameters just used to run this algorithm in a script.void
windowClosing(java.awt.event.WindowEvent event)
Disposes of error dialog, then frame.-
Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Field Detail
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serialVersionUID
private static final long serialVersionUID
Use serialVersionUID for interoperability.- See Also:
- Constant Field Values
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point1
float point1
DOCUMENT ME!
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point2
float point2
DOCUMENT ME!
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background1
private float background1
DOCUMENT ME!
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background2
private float background2
DOCUMENT ME!
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bin1
private int bin1
DOCUMENT ME!
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bin1Label
private javax.swing.JLabel bin1Label
DOCUMENT ME!
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bin1Text
private javax.swing.JTextField bin1Text
DOCUMENT ME!
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bin2
private int bin2
DOCUMENT ME!
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bin2Label
private javax.swing.JLabel bin2Label
DOCUMENT ME!
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bin2Text
private javax.swing.JTextField bin2Text
DOCUMENT ME!
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blueCheckBox
private javax.swing.JCheckBox blueCheckBox
DOCUMENT ME!
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bottomPad
private int bottomPad
DOCUMENT ME!
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buffer
private float[] buffer
DOCUMENT ME!
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colocalizationAlgo
private AlgorithmColocalizationRegression colocalizationAlgo
DOCUMENT ME!
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colocCheckBox
private javax.swing.JCheckBox colocCheckBox
DOCUMENT ME!
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colorsPresent
private int colorsPresent
DOCUMENT ME!
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comboBoxCostFunct
private javax.swing.JComboBox comboBoxCostFunct
DOCUMENT ME!
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componentImage1
private ViewJComponentEditImage componentImage1
DOCUMENT ME!
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componentImage2
private ViewJComponentEditImage componentImage2
DOCUMENT ME!
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cost
private int cost
DOCUMENT ME!
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doColocWithThresholds
private boolean doColocWithThresholds
DOCUMENT ME!
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doSecondIteration
private boolean doSecondIteration
DOCUMENT ME!
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doVOISubtraction
private boolean doVOISubtraction
DOCUMENT ME!
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entireImage
private boolean entireImage
DOCUMENT ME!
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firstImage
private ModelImage firstImage
DOCUMENT ME!
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firstName
private java.lang.String firstName
DOCUMENT ME!
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greenCheckBox
private javax.swing.JCheckBox greenCheckBox
DOCUMENT ME!
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imageComboBox
private javax.swing.JComboBox imageComboBox
DOCUMENT ME!
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imageLength
private int imageLength
DOCUMENT ME!
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labelCost
private javax.swing.JLabel labelCost
DOCUMENT ME!
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labelImage
private javax.swing.JLabel labelImage
DOCUMENT ME!
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leftPad
private int leftPad
DOCUMENT ME!
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mask
private java.util.BitSet mask
DOCUMENT ME!
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maskButton
private javax.swing.JButton maskButton
DOCUMENT ME!
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maskFileDir
private java.lang.String maskFileDir
DOCUMENT ME!
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maskFileName
private java.lang.String maskFileName
DOCUMENT ME!
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maskImage
private ModelImage maskImage
DOCUMENT ME!
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maskRadio
private javax.swing.JRadioButton maskRadio
DOCUMENT ME!
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maskText
private javax.swing.JTextField maskText
DOCUMENT ME!
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maxR
private double maxR
DOCUMENT ME!
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maxG
private double maxG
DOCUMENT ME!
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maxB
private double maxB
DOCUMENT ME!
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minR
private double minR
DOCUMENT ME!
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minG
private double minG
DOCUMENT ME!
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minB
private double minB
DOCUMENT ME!
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nBoundingVOIs
private int nBoundingVOIs
DOCUMENT ME!
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point1Label
private javax.swing.JLabel point1Label
DOCUMENT ME!
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point1Text
private javax.swing.JTextField point1Text
DOCUMENT ME!
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point2Label
private javax.swing.JLabel point2Label
DOCUMENT ME!
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point2Text
private javax.swing.JTextField point2Text
DOCUMENT ME!
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pointCalculation
private boolean pointCalculation
DOCUMENT ME!
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pointCheckBox
private javax.swing.JCheckBox pointCheckBox
DOCUMENT ME!
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possibleInt2Values
private double possibleInt2Values
DOCUMENT ME!
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possibleIntValues
private double possibleIntValues
DOCUMENT ME!
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redCheckBox
private javax.swing.JCheckBox redCheckBox
DOCUMENT ME!
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regCheckBox
private javax.swing.JCheckBox regCheckBox
DOCUMENT ME!
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register
private boolean register
DOCUMENT ME!
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resultImage
private ModelImage resultImage
DOCUMENT ME!
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rightPad
private int rightPad
DOCUMENT ME!
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secondImage
private ModelImage secondImage
DOCUMENT ME!
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secondIterationCheckBox
private javax.swing.JCheckBox secondIterationCheckBox
DOCUMENT ME!
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secondName
private java.lang.String secondName
DOCUMENT ME!
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topPad
private int topPad
DOCUMENT ME!
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UI
private ViewUserInterface UI
DOCUMENT ME!
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useBlue
private boolean useBlue
DOCUMENT ME!
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useGreen
private boolean useGreen
DOCUMENT ME!
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useRed
private boolean useRed
DOCUMENT ME!
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VOICheckBox
private javax.swing.JCheckBox VOICheckBox
DOCUMENT ME!
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VOIRegions
private javax.swing.JRadioButton VOIRegions
DOCUMENT ME!
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wholeImage
private javax.swing.JRadioButton wholeImage
DOCUMENT ME!
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xDim
private int xDim
DOCUMENT ME!
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yDim
private int yDim
DOCUMENT ME!
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zDim
private int zDim
DOCUMENT ME!
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Constructor Detail
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JDialogColocalizationRegression
public JDialogColocalizationRegression()
Empty constructor needed for dynamic instantiation (used during scripting).
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JDialogColocalizationRegression
public JDialogColocalizationRegression(ModelImage firstImage)
Creates a new JDialogColocalizationRegression object.- Parameters:
firstImage
- DOCUMENT ME!
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JDialogColocalizationRegression
public JDialogColocalizationRegression(java.awt.Frame theParentFrame, ModelImage im)
Creates new dialog.- Parameters:
theParentFrame
- Parent frameim
- Source image
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Method Detail
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJDialogBase
- Parameters:
event
- Event that triggers function.
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algorithmPerformed
public void algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
algorithmPerformed
in interfaceAlgorithmInterface
- Parameters:
algorithm
- Algorithm that caused the event.
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getResultImage
public ModelImage getResultImage()
Accessor that returns the image.- Returns:
- The result image.
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itemStateChanged
public void itemStateChanged(java.awt.event.ItemEvent event)
itemStateChanged.- Specified by:
itemStateChanged
in interfacejava.awt.event.ItemListener
- Overrides:
itemStateChanged
in classJDialogBase
- Parameters:
event
- DOCUMENT ME!
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setBackground1
public void setBackground1(float background1)
DOCUMENT ME!- Parameters:
background1
- DOCUMENT ME!
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setBackground2
public void setBackground2(float background2)
DOCUMENT ME!- Parameters:
background2
- DOCUMENT ME!
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setBin1
public void setBin1(int bin1)
DOCUMENT ME!- Parameters:
bin1
- DOCUMENT ME!
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setBin2
public void setBin2(int bin2)
DOCUMENT ME!- Parameters:
bin2
- DOCUMENT ME!
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setBottomPad
public void setBottomPad(int bottomPad)
DOCUMENT ME!- Parameters:
bottomPad
- DOCUMENT ME!
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setCost
public void setCost(int cost)
DOCUMENT ME!- Parameters:
cost
- DOCUMENT ME!
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setDoColocWithThresholds
public void setDoColocWithThresholds(boolean doColocWithThresholds)
DOCUMENT ME!- Parameters:
doColocWithThresholds
- DOCUMENT ME!
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setDoSecondIteration
public void setDoSecondIteration(boolean doSecondIteration)
DOCUMENT ME!- Parameters:
doSecondIteration
- DOCUMENT ME!
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setDoVOISubtraction
public void setDoVOISubtraction(boolean doVOISubtraction)
DOCUMENT ME!- Parameters:
doVOISubtraction
- DOCUMENT ME!
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setEntireImage
public void setEntireImage(boolean entireImage)
DOCUMENT ME!- Parameters:
entireImage
- DOCUMENT ME!
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setLeftPad
public void setLeftPad(int leftPad)
DOCUMENT ME!- Parameters:
leftPad
- DOCUMENT ME!
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setPoint1
public void setPoint1(float point1)
DOCUMENT ME!- Parameters:
point1
- DOCUMENT ME!
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setPoint2
public void setPoint2(float point2)
DOCUMENT ME!- Parameters:
point2
- DOCUMENT ME!
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setPointCalculation
public void setPointCalculation(boolean pointCalculation)
DOCUMENT ME!- Parameters:
pointCalculation
- DOCUMENT ME!
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setRegister
public void setRegister(boolean register)
DOCUMENT ME!- Parameters:
register
- DOCUMENT ME!
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setRightPad
public void setRightPad(int rightPad)
DOCUMENT ME!- Parameters:
rightPad
- DOCUMENT ME!
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setSecondImage
public void setSecondImage(ModelImage secondImage)
DOCUMENT ME!- Parameters:
secondImage
- DOCUMENT ME!
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setTopPad
public void setTopPad(int topPad)
DOCUMENT ME!- Parameters:
topPad
- DOCUMENT ME!
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setupMaskImage
public boolean setupMaskImage(ModelImage im)
DOCUMENT ME!- Parameters:
im
- DOCUMENT ME!- Returns:
- DOCUMENT ME!
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setUseBlue
public void setUseBlue(boolean useBlue)
DOCUMENT ME!- Parameters:
useBlue
- DOCUMENT ME!
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setUseGreen
public void setUseGreen(boolean useGreen)
DOCUMENT ME!- Parameters:
useGreen
- DOCUMENT ME!
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setUseRed
public void setUseRed(boolean useRed)
DOCUMENT ME!- Parameters:
useRed
- DOCUMENT ME!
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windowClosing
public void windowClosing(java.awt.event.WindowEvent event)
Disposes of error dialog, then frame. Sets cancelled totrue
.- Specified by:
windowClosing
in interfacejava.awt.event.WindowListener
- Overrides:
windowClosing
in classJDialogBase
- Parameters:
event
- DOCUMENT ME!
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callAlgorithm
protected void callAlgorithm()
DOCUMENT ME!- Specified by:
callAlgorithm
in classJDialogScriptableBase
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doPostAlgorithmActions
protected void doPostAlgorithmActions()
Used to perform actions after the execution of the algorithm is completed (e.g., put the result image in the image table). Defaults to no action, override to actually have it do something.- Overrides:
doPostAlgorithmActions
in classJDialogScriptableBase
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setGUIFromParams
protected void setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.- Specified by:
setGUIFromParams
in classJDialogScriptableBase
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storeParamsFromGUI
protected void storeParamsFromGUI() throws ParserException
Record the parameters just used to run this algorithm in a script.- Specified by:
storeParamsFromGUI
in classJDialogScriptableBase
- Throws:
ParserException
- If there is a problem creating/recording the new parameters.
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buildComboBox
private javax.swing.JComboBox buildComboBox(ModelImage image)
Builds a list of images. Returns combobox. List must be all color or all black and white.- Parameters:
image
- DOCUMENT ME!- Returns:
- Newly created combo box.
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init
private void init()
Initializes GUI components and displays dialog.
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setupMask
private boolean setupMask()
DOCUMENT ME!- Returns:
- DOCUMENT ME!
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setVariables
private boolean setVariables()
Use the GUI results to set up the variables needed to run the algorithm.- Returns:
true
if parameters set successfully,false
otherwise.
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