Package gov.nih.mipav.model.file

Class FileInfoICS

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoICS

All Implemented Interfaces:

Serializable, Cloneable

public class FileInfoICS
extends FileInfoBase

This structures contains the information that describes how an ICS image is stored on disk.

See Also:

• FileICS
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private String	captureVersion	DOCUMENT ME!
private String[]	channels	DOCUMENT ME!
private String	dataSetFileName	DOCUMENT ME!
private String[]	exPhotonCnt	DOCUMENT ME!
private String	filterExposureTimeX	DOCUMENT ME!
private String[]	filterFluorophoreX	DOCUMENT ME!
private String[]	history	DOCUMENT ME!
private String[]	labels	DOCUMENT ME!
private String[]	lambdaEm	DOCUMENT ME!
private String[]	lambdaEx	DOCUMENT ME!
private String[]	mapchannel	DOCUMENT ME!
private String[]	numAperture	DOCUMENT ME!
private String[]	pinholeRadius	DOCUMENT ME!
private String	plateChamberID	DOCUMENT ME!
private String	plateVesselID	DOCUMENT ME!
private String[]	probe	DOCUMENT ME!
private String[]	refrInxLensMedium	DOCUMENT ME!
private String[]	refrInxMedium	DOCUMENT ME!
private String	scilType	DOCUMENT ME!
private String	sensorModel	DOCUMENT ME!
private String	sensorType	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private String[]	specimen	DOCUMENT ME!
private String[]	specimenSpecies	DOCUMENT ME!
private String	version	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoICS(String name, String directory, int format)	File info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
void	setCaptureVersion(String captureVersion)	DOCUMENT ME!
void	setChannels(String[] channels)	DOCUMENT ME!
void	setDataSetFileName(String dataSetFileName)	DOCUMENT ME!
void	setExPhotonCnt(String[] exPhotonCnt)	DOCUMENT ME!
void	setFilterExposureTimeX(String filterExposureTimeX)	DOCUMENT ME!
void	setFilterFluorophoreX(String[] filterFluorophoreX)	DOCUMENT ME!
void	setHistory(String[] history)	DOCUMENT ME!
void	setLabels(String[] labels)	DOCUMENT ME!
void	setLambdaEm(String[] lambdaEm)	DOCUMENT ME!
void	setLambdaEx(String[] lambdaEx)	DOCUMENT ME!
void	setMapchannel(String[] mapchannel)	DOCUMENT ME!
void	setNumAperture(String[] numAperture)	DOCUMENT ME!
void	setPinholeRadius(String[] pinholeRadius)	DOCUMENT ME!
void	setPlateChamberID(String plateChamberID)	DOCUMENT ME!
void	setPlateVesselID(String plateVesselID)	DOCUMENT ME!
void	setProbe(String[] probe)	DOCUMENT ME!
void	setRefrInxLensMedium(String[] refrInxLensMedium)	DOCUMENT ME!
void	setRefrInxMedium(String[] refrInxMedium)	DOCUMENT ME!
void	setScilType(String scilType)	DOCUMENT ME!
void	setSensorModel(String sensorModel)	DOCUMENT ME!
void	setSensorType(String sensorType)	DOCUMENT ME!
void	setSpecimen(String[] specimen)	DOCUMENT ME!
void	setSpecimenSpecies(String[] specimenSpecies)	DOCUMENT ME!
void	setVersion(String version)	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

captureVersion

private String captureVersion

DOCUMENT ME!

channels

private String[] channels

DOCUMENT ME!

dataSetFileName

private String dataSetFileName

DOCUMENT ME!

exPhotonCnt

private String[] exPhotonCnt

DOCUMENT ME!

filterExposureTimeX

private String filterExposureTimeX

DOCUMENT ME!

filterFluorophoreX

private String[] filterFluorophoreX

DOCUMENT ME!

history

private String[] history

DOCUMENT ME!

labels

private String[] labels

DOCUMENT ME!

lambdaEm

private String[] lambdaEm

DOCUMENT ME!

lambdaEx

private String[] lambdaEx

DOCUMENT ME!

mapchannel

private String[] mapchannel

DOCUMENT ME!

numAperture

private String[] numAperture

DOCUMENT ME!

pinholeRadius

private String[] pinholeRadius

DOCUMENT ME!

plateChamberID

private String plateChamberID

DOCUMENT ME!

plateVesselID

private String plateVesselID

DOCUMENT ME!

probe

private String[] probe

DOCUMENT ME!

refrInxLensMedium

private String[] refrInxLensMedium

DOCUMENT ME!

refrInxMedium

private String[] refrInxMedium

DOCUMENT ME!

scilType

private String scilType

DOCUMENT ME!

sensorModel

private String sensorModel

DOCUMENT ME!

sensorType

private String sensorType

DOCUMENT ME!

specimen

private String[] specimen

DOCUMENT ME!

specimenSpecies

private String[] specimenSpecies

DOCUMENT ME!

version

private String version

DOCUMENT ME!

Constructor Details

FileInfoICS

public FileInfoICS(String name,
 String directory,
 int format)

File info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Details

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
 TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setCaptureVersion

public void setCaptureVersion(String captureVersion)

DOCUMENT ME!

Parameters:

captureVersion - DOCUMENT ME!

setChannels

public void setChannels(String[] channels)

DOCUMENT ME!

Parameters:

channels - DOCUMENT ME!

setDataSetFileName

public void setDataSetFileName(String dataSetFileName)

DOCUMENT ME!

Parameters:

dataSetFileName - DOCUMENT ME!

setExPhotonCnt

public void setExPhotonCnt(String[] exPhotonCnt)

DOCUMENT ME!

Parameters:

exPhotonCnt - DOCUMENT ME!

setFilterExposureTimeX

public void setFilterExposureTimeX(String filterExposureTimeX)

DOCUMENT ME!

Parameters:

filterExposureTimeX - DOCUMENT ME!

setFilterFluorophoreX

public void setFilterFluorophoreX(String[] filterFluorophoreX)

DOCUMENT ME!

Parameters:

filterFluorophoreX - DOCUMENT ME!

setHistory

public void setHistory(String[] history)

DOCUMENT ME!

Parameters:

history - DOCUMENT ME!

setLabels

public void setLabels(String[] labels)

DOCUMENT ME!

Parameters:

labels - DOCUMENT ME!

setLambdaEm

public void setLambdaEm(String[] lambdaEm)

DOCUMENT ME!

Parameters:

lambdaEm - DOCUMENT ME!

setLambdaEx

public void setLambdaEx(String[] lambdaEx)

DOCUMENT ME!

Parameters:

lambdaEx - DOCUMENT ME!

setMapchannel

public void setMapchannel(String[] mapchannel)

DOCUMENT ME!

Parameters:

mapchannel - DOCUMENT ME!

setNumAperture

public void setNumAperture(String[] numAperture)

DOCUMENT ME!

Parameters:

numAperture - DOCUMENT ME!

setPinholeRadius

public void setPinholeRadius(String[] pinholeRadius)

DOCUMENT ME!

Parameters:

pinholeRadius - DOCUMENT ME!

setPlateChamberID

public void setPlateChamberID(String plateChamberID)

DOCUMENT ME!

Parameters:

plateChamberID - DOCUMENT ME!

setPlateVesselID

public void setPlateVesselID(String plateVesselID)

DOCUMENT ME!

Parameters:

plateVesselID - DOCUMENT ME!

setProbe

public void setProbe(String[] probe)

DOCUMENT ME!

Parameters:

probe - DOCUMENT ME!

setRefrInxLensMedium

public void setRefrInxLensMedium(String[] refrInxLensMedium)

DOCUMENT ME!

Parameters:

refrInxLensMedium - DOCUMENT ME!

setRefrInxMedium

public void setRefrInxMedium(String[] refrInxMedium)

DOCUMENT ME!

Parameters:

refrInxMedium - DOCUMENT ME!

setScilType

public void setScilType(String scilType)

DOCUMENT ME!

Parameters:

scilType - DOCUMENT ME!

setSensorModel

public void setSensorModel(String sensorModel)

DOCUMENT ME!

Parameters:

sensorModel - DOCUMENT ME!

setSensorType

public void setSensorType(String sensorType)

DOCUMENT ME!

Parameters:

sensorType - DOCUMENT ME!

setSpecimen

public void setSpecimen(String[] specimen)

DOCUMENT ME!

Parameters:

specimen - DOCUMENT ME!

setSpecimenSpecies

public void setSpecimenSpecies(String[] specimenSpecies)

DOCUMENT ME!

Parameters:

specimenSpecies - DOCUMENT ME!

setVersion

public void setVersion(String version)

DOCUMENT ME!

Parameters:

version - DOCUMENT ME!