Package gov.nih.mipav.model.file

Class FileInfoICS

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoICS

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class FileInfoICS
extends FileInfoBase

This structures contains the information that describes how an ICS image is stored on disk.

See Also:

FileICS, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private java.lang.String	captureVersion	DOCUMENT ME!
private java.lang.String[]	channels	DOCUMENT ME!
private java.lang.String	dataSetFileName	DOCUMENT ME!
private java.lang.String[]	exPhotonCnt	DOCUMENT ME!
private java.lang.String	filterExposureTimeX	DOCUMENT ME!
private java.lang.String[]	filterFluorophoreX	DOCUMENT ME!
private java.lang.String[]	history	DOCUMENT ME!
private java.lang.String[]	labels	DOCUMENT ME!
private java.lang.String[]	lambdaEm	DOCUMENT ME!
private java.lang.String[]	lambdaEx	DOCUMENT ME!
private java.lang.String[]	mapchannel	DOCUMENT ME!
private java.lang.String[]	numAperture	DOCUMENT ME!
private java.lang.String[]	pinholeRadius	DOCUMENT ME!
private java.lang.String	plateChamberID	DOCUMENT ME!
private java.lang.String	plateVesselID	DOCUMENT ME!
private java.lang.String[]	probe	DOCUMENT ME!
private java.lang.String[]	refrInxLensMedium	DOCUMENT ME!
private java.lang.String[]	refrInxMedium	DOCUMENT ME!
private java.lang.String	scilType	DOCUMENT ME!
private java.lang.String	sensorModel	DOCUMENT ME!
private java.lang.String	sensorType	DOCUMENT ME!
private static long	serialVersionUID	Use serialVersionUID for interoperability.
private java.lang.String[]	specimen	DOCUMENT ME!
private java.lang.String[]	specimenSpecies	DOCUMENT ME!
private java.lang.String	version	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoICS(java.lang.String name, java.lang.String directory, int format)	File info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
void	setCaptureVersion(java.lang.String captureVersion)	DOCUMENT ME!
void	setChannels(java.lang.String[] channels)	DOCUMENT ME!
void	setDataSetFileName(java.lang.String dataSetFileName)	DOCUMENT ME!
void	setExPhotonCnt(java.lang.String[] exPhotonCnt)	DOCUMENT ME!
void	setFilterExposureTimeX(java.lang.String filterExposureTimeX)	DOCUMENT ME!
void	setFilterFluorophoreX(java.lang.String[] filterFluorophoreX)	DOCUMENT ME!
void	setHistory(java.lang.String[] history)	DOCUMENT ME!
void	setLabels(java.lang.String[] labels)	DOCUMENT ME!
void	setLambdaEm(java.lang.String[] lambdaEm)	DOCUMENT ME!
void	setLambdaEx(java.lang.String[] lambdaEx)	DOCUMENT ME!
void	setMapchannel(java.lang.String[] mapchannel)	DOCUMENT ME!
void	setNumAperture(java.lang.String[] numAperture)	DOCUMENT ME!
void	setPinholeRadius(java.lang.String[] pinholeRadius)	DOCUMENT ME!
void	setPlateChamberID(java.lang.String plateChamberID)	DOCUMENT ME!
void	setPlateVesselID(java.lang.String plateVesselID)	DOCUMENT ME!
void	setProbe(java.lang.String[] probe)	DOCUMENT ME!
void	setRefrInxLensMedium(java.lang.String[] refrInxLensMedium)	DOCUMENT ME!
void	setRefrInxMedium(java.lang.String[] refrInxMedium)	DOCUMENT ME!
void	setScilType(java.lang.String scilType)	DOCUMENT ME!
void	setSensorModel(java.lang.String sensorModel)	DOCUMENT ME!
void	setSensorType(java.lang.String sensorType)	DOCUMENT ME!
void	setSpecimen(java.lang.String[] specimen)	DOCUMENT ME!
void	setSpecimenSpecies(java.lang.String[] specimenSpecies)	DOCUMENT ME!
void	setVersion(java.lang.String version)	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

Constant Field Values

captureVersion

private java.lang.String captureVersion

DOCUMENT ME!

channels

private java.lang.String[] channels

DOCUMENT ME!

dataSetFileName

private java.lang.String dataSetFileName

DOCUMENT ME!

exPhotonCnt

private java.lang.String[] exPhotonCnt

DOCUMENT ME!

filterExposureTimeX

private java.lang.String filterExposureTimeX

DOCUMENT ME!

filterFluorophoreX

private java.lang.String[] filterFluorophoreX

DOCUMENT ME!

history

private java.lang.String[] history

DOCUMENT ME!

labels

private java.lang.String[] labels

DOCUMENT ME!

lambdaEm

private java.lang.String[] lambdaEm

DOCUMENT ME!

lambdaEx

private java.lang.String[] lambdaEx

DOCUMENT ME!

mapchannel

private java.lang.String[] mapchannel

DOCUMENT ME!

numAperture

private java.lang.String[] numAperture

DOCUMENT ME!

pinholeRadius

private java.lang.String[] pinholeRadius

DOCUMENT ME!

plateChamberID

private java.lang.String plateChamberID

DOCUMENT ME!

plateVesselID

private java.lang.String plateVesselID

DOCUMENT ME!

probe

private java.lang.String[] probe

DOCUMENT ME!

refrInxLensMedium

private java.lang.String[] refrInxLensMedium

DOCUMENT ME!

refrInxMedium

private java.lang.String[] refrInxMedium

DOCUMENT ME!

scilType

private java.lang.String scilType

DOCUMENT ME!

sensorModel

private java.lang.String sensorModel

DOCUMENT ME!

sensorType

private java.lang.String sensorType

DOCUMENT ME!

specimen

private java.lang.String[] specimen

DOCUMENT ME!

specimenSpecies

private java.lang.String[] specimenSpecies

DOCUMENT ME!

version

private java.lang.String version

DOCUMENT ME!

Constructor Detail

FileInfoICS

public FileInfoICS(java.lang.String name,
                   java.lang.String directory,
                   int format)

File info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Detail

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
                             TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setCaptureVersion

public void setCaptureVersion(java.lang.String captureVersion)

DOCUMENT ME!

Parameters:

captureVersion - DOCUMENT ME!

setChannels

public void setChannels(java.lang.String[] channels)

DOCUMENT ME!

Parameters:

channels - DOCUMENT ME!

setDataSetFileName

public void setDataSetFileName(java.lang.String dataSetFileName)

DOCUMENT ME!

Parameters:

dataSetFileName - DOCUMENT ME!

setExPhotonCnt

public void setExPhotonCnt(java.lang.String[] exPhotonCnt)

DOCUMENT ME!

Parameters:

exPhotonCnt - DOCUMENT ME!

setFilterExposureTimeX

public void setFilterExposureTimeX(java.lang.String filterExposureTimeX)

DOCUMENT ME!

Parameters:

filterExposureTimeX - DOCUMENT ME!

setFilterFluorophoreX

public void setFilterFluorophoreX(java.lang.String[] filterFluorophoreX)

DOCUMENT ME!

Parameters:

filterFluorophoreX - DOCUMENT ME!

setHistory

public void setHistory(java.lang.String[] history)

DOCUMENT ME!

Parameters:

history - DOCUMENT ME!

setLabels

public void setLabels(java.lang.String[] labels)

DOCUMENT ME!

Parameters:

labels - DOCUMENT ME!

setLambdaEm

public void setLambdaEm(java.lang.String[] lambdaEm)

DOCUMENT ME!

Parameters:

lambdaEm - DOCUMENT ME!

setLambdaEx

public void setLambdaEx(java.lang.String[] lambdaEx)

DOCUMENT ME!

Parameters:

lambdaEx - DOCUMENT ME!

setMapchannel

public void setMapchannel(java.lang.String[] mapchannel)

DOCUMENT ME!

Parameters:

mapchannel - DOCUMENT ME!

setNumAperture

public void setNumAperture(java.lang.String[] numAperture)

DOCUMENT ME!

Parameters:

numAperture - DOCUMENT ME!

setPinholeRadius

public void setPinholeRadius(java.lang.String[] pinholeRadius)

DOCUMENT ME!

Parameters:

pinholeRadius - DOCUMENT ME!

setPlateChamberID

public void setPlateChamberID(java.lang.String plateChamberID)

DOCUMENT ME!

Parameters:

plateChamberID - DOCUMENT ME!

setPlateVesselID

public void setPlateVesselID(java.lang.String plateVesselID)

DOCUMENT ME!

Parameters:

plateVesselID - DOCUMENT ME!

setProbe

public void setProbe(java.lang.String[] probe)

DOCUMENT ME!

Parameters:

probe - DOCUMENT ME!

setRefrInxLensMedium

public void setRefrInxLensMedium(java.lang.String[] refrInxLensMedium)

DOCUMENT ME!

Parameters:

refrInxLensMedium - DOCUMENT ME!

setRefrInxMedium

public void setRefrInxMedium(java.lang.String[] refrInxMedium)

DOCUMENT ME!

Parameters:

refrInxMedium - DOCUMENT ME!

setScilType

public void setScilType(java.lang.String scilType)

DOCUMENT ME!

Parameters:

scilType - DOCUMENT ME!

setSensorModel

public void setSensorModel(java.lang.String sensorModel)

DOCUMENT ME!

Parameters:

sensorModel - DOCUMENT ME!

setSensorType

public void setSensorType(java.lang.String sensorType)

DOCUMENT ME!

Parameters:

sensorType - DOCUMENT ME!

setSpecimen

public void setSpecimen(java.lang.String[] specimen)

DOCUMENT ME!

Parameters:

specimen - DOCUMENT ME!

setSpecimenSpecies

public void setSpecimenSpecies(java.lang.String[] specimenSpecies)

DOCUMENT ME!

Parameters:

specimenSpecies - DOCUMENT ME!

setVersion

public void setVersion(java.lang.String version)

DOCUMENT ME!

Parameters:

version - DOCUMENT ME!