Package gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview

Class JPanelProbe

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

gov.nih.mipav.view.renderer.JPanelRendererBase

gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview.JPanelProbe

All Implemented Interfaces:

ActionListener, FocusListener, ItemListener, KeyListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, ListSelectionListener

public class JPanelProbe
extends JPanelRendererJ3D
implements ChangeListener, ListSelectionListener

Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame. This dialog also control the X, Y, Z slices movements.

Author:

Ruida Cheng

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	JPanelProbe.CancelListener	Cancel the color dialog, change nothing.
class	JPanelProbe.DrawingPane	Helper class for resizing.
(package private) class	JPanelProbe.OkColorListener	Pick up the selected color and call method to change the surface color.

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private JButton	bonePresetButton	DOCUMENT ME!
private JCheckBox	burnBackFaceCB	burning point back face culling check box.
private BurnBase	burnBase	Burn base reference.
private JCheckBox	burnClipCB	burning point clipping check box.
private int	burnIndex	Current burning point index being hightlighted.
private javax.vecmath.Vector3f	burningPtTransVector	Burning point coordinate vector in world coordinate system.
private JList	burnList	Burn list that hold the burning point names.
private JButton	calcButton	Calculat button.
private javax.vecmath.Point3f	center	Burning point coordinate.
private JLabel	centerLabel	burning point center label.
private boolean	clipping	Burning surface being clipped or not.
private JButton	colorButton	Burning point color button.
private ViewJColorChooser	colorChooser	Color chooser when the user changes the color of the surface.
private JLabel	colorLabel	Burning point color label.
private boolean	culling	Burning surface being culled ( back face bulling ) or not.
private int	cursorMode	curreent cursor nevigation mode.
private JLabel	diffVolumeLabel	Volume difference label for the current treatment.
private JTextField	diffVolumeText	Volume difference text.
private JPanelProbe.DrawingPane	drawingPane	Associate structure of the scroll pane to resize the panel properly.
private javax.vecmath.Vector3f	endPtTransVector	End point coordinate vector in the world coordinate system.
private JLabel	entryPointLabel	entry point label.
private JPanel	entryPointPanel	Panel that hold the entry point roation check box.
private JCheckBox	entryPointRotationCB	entry point rotation check box.
private JButton	liverPresetButton	Liver segmentation preset opacity transform function control button.
private JButton	loadVisualizationButton	Load button for the opacity transform function.
private JLabel	m_kProbeTwistLabel	DOCUMENT ME!
private JSlider	m_kProbeTwistSlider	Rotation/Twist around the direction of the probe:.
private float	maxBox	The maximum of the fram box values.
private static int	NONE	cursor default nevigation mode.
private TreatmentInformation	noTargetTreatment	Treatment information to be used if the user wants to burn without any target surface.
private float	opacity	Burning point opacity.
private JLabel	opacityLabel	The opacity slider label.
private JSlider	opacitySlider	burning point surface opacity slider.
private JLabel[]	opacitySliderLabels	burning point surface opacity slider label.
private ViewJFrameVolumeView	parentFrame	Volume view frame work reference.
private Probe	probe	Probe reference.
private JList	probeList	Probes list.
private static int	PROBEMOVE	cursor probe nevigation mode.
private JToggleButton	probeResetButton	Reset probe nevigation mode.
private JToggleButton	probeTargetButton	Control the tri-planar probe nevigation mode.
private JLabel	radiusLabel	burning point diameter label.
private JLabel	resultLabel	result label to show the bone, vasculature detection information message.
private JButton	saveVisualizationButton	Save button for the opacity tranform function.
private JScrollPane	scroller	Scroll pane that control the resizing of the panel.
private JLabel	semiXLabel	burning point semi axis X label.
private JTextField	semiXText	burning point semi axis X text field.
private JLabel	semiYLabel	burning point semi axis Y label.
private JTextField	semiYText	burning point semi axis Y text field.
private JLabel	semiZLabel	burning point semi axis Z label.
private JTextField	semiZText	burning point semi axis Z text field.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private boolean	showBurnLabels	Flag indicates the show burning text label or not.
private JCheckBox	showBurnLabelsCB	Show the burning text label checkbox.
private JButton	skinPresetButton	Skin segmentation preset opacity transform function control button.
private JSlider	sliderX	The probe X slider that control the probe push and pull movements.
private boolean	snapToTarget	Whether to snap to center of a target surface when it is selected; defaults to true.
private JCheckBox	snapToTargetCB	Checkbox indicating whether to snap to center of a target surface when it is selected.
private javax.vecmath.Vector3f	startPtTransVector	Start point ( invisible ) coordinate vector in world coordinate system.
private JTabbedPane	tabbedPane	The main tabbed pane in the volume view frame.
private JPanel	tabPanel	The main tab contrl panel.
private JList	targetList	Surface target list (tumors).
private JTextField	targetVolumeText	Label containing the volume of the current target surface.
private JTextField	targetXText	X label for the center coordinate of the current target surface.
private JTextField	targetYText	Y label for the center coordinate of the current target surface.
private JTextField	targetZText	Z label for the center coordinate of the current target surface.
private JComboBox	tipLengthCB	Combo box for indicating the length of the probe tip.
private JToolBar	toolBar	Tool bar.
private JLabel	totalVolumeLabel	Burning points total volume label.
private JTextField	totalVolumeText	Burning point total volume text.
private JToggleButton	traverseButton	Control the tri-planar default view nevigation mode.
private Vector<TreatmentInformation>	treatmentVector	List of treatment sets.
private JLabel	volumeLabel	buring point volume label.
private JTextField	volumeText	burning pont volume text box.
private float	xBox	Parent frame box value.
private JLabel	xLabel	burning point X, Y, Z coordinate label.
private JLabel	xLabelEntry	entry point X, Y, Z coordinate label.
private float	xRes	The resolutions of the (possibly respampled) image (the one shown in the renderer).
private JSlider	xSliderS	slider that controls the probe moves along the x direction.
private JTextField	xText	burning point X, Y, Z coordinate text box.
private JTextField	xTextEntry	entry point X, Y, Z coordinate text box.
private float	yBox	Parent frame box value.
private JLabel	yLabel	burning point X, Y, Z coordinate label.
private JLabel	yLabelEntry	entry point X, Y, Z coordinate label.
private float	yRes	The resolutions of the (possibly respampled) image (the one shown in the renderer).
private JSlider	ySliderS	slider that controls the probe moves along the y direction.
private JTextField	yText	burning point X, Y, Z coordinate text box.
private JTextField	yTextEntry	entry point X, Y, Z coordinate text box.
private float	zBox	Parent frame box value.
private JLabel	zLabel	burning point X, Y, Z coordinate label.
private JLabel	zLabelEntry	entry point X, Y, Z coordinate label.
private float	zRes	The resolutions of the (possibly respampled) image (the one shown in the renderer).
private JSlider	zSliderS	slider that controls the probe moves along the z direction.
private JTextField	zText	burning point X, Y, Z coordinate text box.
private JTextField	zTextEntry	entry point X, Y, Z coordinate text box.

Fields inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

rayBasedRender, renderBase

Fields inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

applyButton, cancelButton, cancelFlag, closeButton, helpButton, isActiveImage, mainPanel, NEW, OKButton, REPLACE, runInSeparateThread, serif12, serif12B

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
JPanelProbe(SurfaceRender parent, ViewJFrameBase _parentFrame, float xBox, float yBox, float zBox)	Constructor to initialize the probe control panel.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Action perform event function that handle all the commands in the probe panel.
private void	buildBurnPackingPanel()	Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
private void	buildBurnVisPanel()	Build the tab containing the color, opac, picking, labels, etc for burns.
private void	buildProbeModelPanel()	Build the tab which allows the user to change the currently used probe model.
private void	buildProbePlacementPanel()	Build the tab with controls / info used in probe placement before a burn.
private JPanel	buildProbeSlider()	Setup the probe moving control panel that include x, y, z moving sliders.
private void	buildTabbedPanel()	Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
private JPanel	buildTargetListPanel()	Build the target surface (tumor) control panel.
private void	buildTargetPanel()	Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
private void	buildToolBar()	Build the probe toolbar control.
private void	buildTreatmentPanel()	Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
private static JLabel	createBoldLabel(String title)	Creates a label in the proper (bold) font and color.
private static JLabel	createLabel(String title)	Creates a label in the proper font and color.
void	detectTissue()	Detect the body tissue component.
void	dispose()	Dispose memory.
private void	enableBurnTreatmentComponents(boolean flag)	Enable or disable the components on the target treatment panel.
private void	enableBurnVisComponents(boolean flag)	Enable or disable the components on the burn visualization panel.
void	enableProbeBehavior(boolean flag)	Enable probe mouse behavior branch group.
BurnBase	getBurnBase()	Get the burn base reference inside the probe control panel.
boolean	getBurnLabelFlag()	Get the show burning point label's flag.
javax.vecmath.Vector3f	getBurnPoint()	Get the burning point world coordinate.
javax.media.j3d.BranchGroup	getBurnRootParentBG()	Get the burn root branch group.
private void	getColorChange(Color color)	This is called when the user chooses a new color for the surface.
SurfaceAttributes	getCurSurface()	Get the current highlight surface.
TreatmentInformation	getCurTreatment()	Get the treatment info that matches the currently selected target surface.
javax.vecmath.Vector3f	getEndPoint()	Get the end point world coordinate vector.
javax.vecmath.Point3f	getEntryPoint()	Get the entry ponit world coordinate.
JPanel	getMainPanel()	Get the main control panel.
Probe	getProbeBase()	Get the probe base reference inside the burning control panel.
javax.media.j3d.BranchGroup	getProbesRootBG()	Return the root to the probes branches.
javax.vecmath.Vector3f	getStartPoint()	Get the start point world coordinate vector.
SurfaceAttributes	getTargetSurface()	Return the currently targeted surface.
private TreatmentInformation	getTreatmentInfo(int index)	Get information about a treatment.
private void	init()	Initialize the whole probe panel control layout.
boolean	isSnapToTarget()	Return whether the user wants to snap to the treatment target surface.
private ModelImage	loadImage()	Ask the user for an image to load and return it.
void	loadVisualizationDataFrom(boolean loadAll, String filename, String dirName, boolean quietMode)	This method loads the LUT and opacity transfer function for the active image.
private void	loadVisualizationSettings(TransferFunction lut, TransferFunction opac)	Loads visualization settings for this image.
private void	removeAllBurn()	Remove all the burning point geometry shapes in the volume.
private void	removeBurn()	The action taken when the Remove button is clicked in the list box.
void	removeProbingPath()	During mouse release, remove the probing path and clear the probe color mask.
void	resizePanel(int panelWidth, int frameHeight)	Resizig the control panel with ViewJFrameVolumeView's frame width and height.
private void	saveImage(ModelImage img)	Ask the user for a name to save an image as and then write it out to disk.
void	saveVisualizationDataAs(boolean saveAll, String filename, String dirName)	This method saves the LUT and opacity function for the active image.
void	setProbeGreenColor(boolean flag)	When the probe is picked, switch the probe geometry appearance to green.
void	startBurn()	When the burn button is clicked, invoked the start burn method to show the burnning process.
private void	startBurnPacking()	Start to try to choose an optimal ablation plan for the current target surface.
void	stateChanged(ChangeEvent e)	State change event, invokded by the sliders moves.
javax.vecmath.Point3f	transformPtVolumeToImage(javax.vecmath.Point3f pt)	Transform a java3d point [-1,1] to the image volume space.
void	updateBurnList(int index)	Updates the burn name list's selected element.
void	updateProbeList()	Update probe list.
void	updateProbePos(float x, float y, float z)	Updates the probe world coordinate from the tri-planar view's mouse drag event.
private void	updateTargetLabels()	Update the labels which show info about the current target surface.
void	updateTargetList()	Update target surface list from the JPanelSurface control dialog.
void	updateTreatmentPanel(boolean swapBurnList)	Update the treatment panel components to correpsond to the currently selected target surface.
void	valueChanged(ListSelectionEvent kEvent)	Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.
boolean	withinDistance(float centerX, float centerY, float centerZ, float ptrX, float ptrY, float ptrZ, double r)	Check to see if the given voxel is within the sphere radius from the center point.

Methods inherited from class gov.nih.mipav.view.renderer.J3D.JPanelRendererJ3D

disposeLocal, getSurfaceRender, setRayBasedRender, setSurfaceRender

Methods inherited from class gov.nih.mipav.view.renderer.JPanelRendererBase

buildApplyButton, buildCancelButton, buildCloseButton, buildHelpButton, buildOKButton, buildTitledBorder, finalize, focusGained, focusLost, isCancelled, itemStateChanged, keyPressed, keyReleased, keyTyped, makeString, setLeftHandSystem, setVisible, setVisibleStandard, setWCSystem, testParameter

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.FocusListener

focusGained, focusLost

Methods inherited from interface java.awt.event.ItemListener

itemStateChanged

Methods inherited from interface java.awt.event.KeyListener

keyPressed, keyReleased, keyTyped

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

NONE

private static int NONE

cursor default nevigation mode.

PROBEMOVE

private static int PROBEMOVE

cursor probe nevigation mode.

bonePresetButton

private JButton bonePresetButton

DOCUMENT ME!

burnBackFaceCB

private JCheckBox burnBackFaceCB

burning point back face culling check box.

burnBase

private BurnBase burnBase

Burn base reference.

burnClipCB

private JCheckBox burnClipCB

burning point clipping check box.

burnIndex

private int burnIndex

Current burning point index being hightlighted.

burningPtTransVector

private javax.vecmath.Vector3f burningPtTransVector

Burning point coordinate vector in world coordinate system.

burnList

private JList burnList

Burn list that hold the burning point names.

calcButton

private JButton calcButton

Calculat button.

center

private javax.vecmath.Point3f center

Burning point coordinate.

centerLabel

private JLabel centerLabel

burning point center label.

clipping

private boolean clipping

Burning surface being clipped or not.

colorButton

private JButton colorButton

Burning point color button.

colorChooser

private ViewJColorChooser colorChooser

Color chooser when the user changes the color of the surface.

colorLabel

private JLabel colorLabel

Burning point color label.

culling

private boolean culling

Burning surface being culled ( back face bulling ) or not.

cursorMode

private int cursorMode

curreent cursor nevigation mode.

diffVolumeLabel

private JLabel diffVolumeLabel

Volume difference label for the current treatment.

diffVolumeText

private JTextField diffVolumeText

Volume difference text.

drawingPane

private JPanelProbe.DrawingPane drawingPane

Associate structure of the scroll pane to resize the panel properly.

endPtTransVector

private javax.vecmath.Vector3f endPtTransVector

End point coordinate vector in the world coordinate system.

entryPointLabel

private JLabel entryPointLabel

entry point label.

entryPointPanel

private JPanel entryPointPanel

Panel that hold the entry point roation check box.

entryPointRotationCB

private JCheckBox entryPointRotationCB

entry point rotation check box.

liverPresetButton

private JButton liverPresetButton

Liver segmentation preset opacity transform function control button.

loadVisualizationButton

private JButton loadVisualizationButton

Load button for the opacity transform function.

m_kProbeTwistLabel

private JLabel m_kProbeTwistLabel

DOCUMENT ME!

m_kProbeTwistSlider

private JSlider m_kProbeTwistSlider

Rotation/Twist around the direction of the probe:.

maxBox

private float maxBox

The maximum of the fram box values.

noTargetTreatment

private TreatmentInformation noTargetTreatment

Treatment information to be used if the user wants to burn without any target surface.

opacity

private float opacity

Burning point opacity.

opacityLabel

private JLabel opacityLabel

The opacity slider label.

opacitySlider

private JSlider opacitySlider

burning point surface opacity slider.

opacitySliderLabels

private JLabel[] opacitySliderLabels

burning point surface opacity slider label.

parentFrame

private ViewJFrameVolumeView parentFrame

Volume view frame work reference.

probe

private Probe probe

Probe reference.

probeList

private JList probeList

Probes list.

probeResetButton

private JToggleButton probeResetButton

Reset probe nevigation mode.

probeTargetButton

private JToggleButton probeTargetButton

Control the tri-planar probe nevigation mode.

radiusLabel

private JLabel radiusLabel

burning point diameter label.

resultLabel

private JLabel resultLabel

result label to show the bone, vasculature detection information message.

saveVisualizationButton

private JButton saveVisualizationButton

Save button for the opacity tranform function.

scroller

private JScrollPane scroller

Scroll pane that control the resizing of the panel.

semiXLabel

private JLabel semiXLabel

burning point semi axis X label.

semiXText

private JTextField semiXText

burning point semi axis X text field.

semiYLabel

private JLabel semiYLabel

burning point semi axis Y label.

semiYText

private JTextField semiYText

burning point semi axis Y text field.

semiZLabel

private JLabel semiZLabel

burning point semi axis Z label.

semiZText

private JTextField semiZText

burning point semi axis Z text field.

showBurnLabels

private boolean showBurnLabels

Flag indicates the show burning text label or not.

showBurnLabelsCB

private JCheckBox showBurnLabelsCB

Show the burning text label checkbox.

skinPresetButton

private JButton skinPresetButton

Skin segmentation preset opacity transform function control button.

sliderX

private JSlider sliderX

The probe X slider that control the probe push and pull movements.

snapToTarget

private boolean snapToTarget

Whether to snap to center of a target surface when it is selected; defaults to true.

snapToTargetCB

private JCheckBox snapToTargetCB

Checkbox indicating whether to snap to center of a target surface when it is selected.

startPtTransVector

private javax.vecmath.Vector3f startPtTransVector

Start point ( invisible ) coordinate vector in world coordinate system.

tabbedPane

private JTabbedPane tabbedPane

The main tabbed pane in the volume view frame.

tabPanel

private JPanel tabPanel

The main tab contrl panel.

targetList

private JList targetList

Surface target list (tumors).

targetVolumeText

private JTextField targetVolumeText

Label containing the volume of the current target surface.

targetXText

private JTextField targetXText

X label for the center coordinate of the current target surface.

targetYText

private JTextField targetYText

Y label for the center coordinate of the current target surface.

targetZText

private JTextField targetZText

Z label for the center coordinate of the current target surface.

tipLengthCB

private JComboBox tipLengthCB

Combo box for indicating the length of the probe tip. Currently used just by CoolTip probe.

toolBar

private JToolBar toolBar

Tool bar.

totalVolumeLabel

private JLabel totalVolumeLabel

Burning points total volume label.

totalVolumeText

private JTextField totalVolumeText

Burning point total volume text.

traverseButton

private JToggleButton traverseButton

Control the tri-planar default view nevigation mode.

treatmentVector

private Vector<TreatmentInformation> treatmentVector

List of treatment sets.

volumeLabel

private JLabel volumeLabel

buring point volume label.

volumeText

private JTextField volumeText

burning pont volume text box.

xBox

private float xBox

Parent frame box value.

yBox

private float yBox

Parent frame box value.

zBox

private float zBox

Parent frame box value.

xLabel

private JLabel xLabel

burning point X, Y, Z coordinate label.

yLabel

private JLabel yLabel

burning point X, Y, Z coordinate label.

zLabel

private JLabel zLabel

burning point X, Y, Z coordinate label.

xLabelEntry

private JLabel xLabelEntry

entry point X, Y, Z coordinate label.

yLabelEntry

private JLabel yLabelEntry

entry point X, Y, Z coordinate label.

zLabelEntry

private JLabel zLabelEntry

entry point X, Y, Z coordinate label.

xRes

private float xRes

The resolutions of the (possibly respampled) image (the one shown in the renderer).

yRes

private float yRes

The resolutions of the (possibly respampled) image (the one shown in the renderer).

zRes

private float zRes

The resolutions of the (possibly respampled) image (the one shown in the renderer).

xSliderS

private JSlider xSliderS

slider that controls the probe moves along the x direction.

xText

private JTextField xText

burning point X, Y, Z coordinate text box.

yText

private JTextField yText

burning point X, Y, Z coordinate text box.

zText

private JTextField zText

burning point X, Y, Z coordinate text box.

xTextEntry

private JTextField xTextEntry

entry point X, Y, Z coordinate text box.

yTextEntry

private JTextField yTextEntry

entry point X, Y, Z coordinate text box.

zTextEntry

private JTextField zTextEntry

entry point X, Y, Z coordinate text box.

ySliderS

private JSlider ySliderS

slider that controls the probe moves along the y direction.

zSliderS

private JSlider zSliderS

slider that controls the probe moves along the z direction.

Constructor Details

JPanelProbe

public JPanelProbe(SurfaceRender parent,
 ViewJFrameBase _parentFrame,
 float xBox,
 float yBox,
 float zBox)

Constructor to initialize the probe control panel.

Parameters:

parent - SurfaceRender reference.

_parentFrame - ViewJFrameVolumeView reference.

xBox - DOCUMENT ME!

yBox - DOCUMENT ME!

zBox - DOCUMENT ME!

Method Details

actionPerformed

public void actionPerformed(ActionEvent event)

Action perform event function that handle all the commands in the probe panel.

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class JPanelRendererBase

Parameters:

event - Action Event

detectTissue

public void detectTissue()

Detect the body tissue component. If the bone or the vasculature is detected, draw the corresponding color along the probing path, also, show the detection message in the search panel.

dispose

public void dispose()

Dispose memory.

enableProbeBehavior

public void enableProbeBehavior(boolean flag)

Enable probe mouse behavior branch group.

Parameters:

flag - true means turn on, false means turn off.

getBurnBase

public BurnBase getBurnBase()

Get the burn base reference inside the probe control panel.

Returns:

BurnBase

getBurnLabelFlag

public boolean getBurnLabelFlag()

Get the show burning point label's flag.

Returns:

boolean show label or not.

getBurnPoint

public javax.vecmath.Vector3f getBurnPoint()

Get the burning point world coordinate.

Returns:

Vector3f burning point tranform vector.

getBurnRootParentBG

public javax.media.j3d.BranchGroup getBurnRootParentBG()

Get the burn root branch group. JPanelSurface calls this method during the geometry picking procedure.

Returns:

BranchGroup

getCurSurface

public SurfaceAttributes getCurSurface()

Get the current highlight surface.

Returns:

SurfaceAttributes

getCurTreatment

public TreatmentInformation getCurTreatment()

Get the treatment info that matches the currently selected target surface.

Returns:

info about a treatment

getEndPoint

public javax.vecmath.Vector3f getEndPoint()

Get the end point world coordinate vector.

Returns:

Vector3f end point transform vector.

getEntryPoint

public javax.vecmath.Point3f getEntryPoint()

Get the entry ponit world coordinate.

Returns:

Point3f entry ponit transform vector.

getMainPanel

public JPanel getMainPanel()

Get the main control panel.

Specified by:

getMainPanel in class JPanelRendererBase

Returns:

JPanel main control panel.

getProbeBase

public Probe getProbeBase()

Get the probe base reference inside the burning control panel.

Returns:

Probe

getProbesRootBG

public javax.media.j3d.BranchGroup getProbesRootBG()

Return the root to the probes branches.

Returns:

BranchGroup probes branch group

getStartPoint

public javax.vecmath.Vector3f getStartPoint()

Get the start point world coordinate vector.

Returns:

Vector3f start point tranform vector.

getTargetSurface

public SurfaceAttributes getTargetSurface()

Return the currently targeted surface.

Returns:

the attributes of the current target surface

isSnapToTarget

public boolean isSnapToTarget()

Return whether the user wants to snap to the treatment target surface.

Returns:

whether to snap to the target

loadVisualizationDataFrom

public void loadVisualizationDataFrom(boolean loadAll,
 String filename,
 String dirName,
 boolean quietMode)

This method loads the LUT and opacity transfer function for the active image.

Parameters:

loadAll - boolean indicating that both lut and transfer functions should be loaded. If false, then only transfer functions are loaded.

filename - filename to load LUT from

dirName - directory to load LUT from

quietMode - if true indicates that warnings should not be displayed.

removeProbingPath

public void removeProbingPath()

During mouse release, remove the probing path and clear the probe color mask.

resizePanel

public void resizePanel(int panelWidth,
 int frameHeight)

Resizig the control panel with ViewJFrameVolumeView's frame width and height.

Overrides:

resizePanel in class JPanelRendererBase

Parameters:

panelWidth - the panel should be

frameHeight - the height of the renderer frame

saveVisualizationDataAs

public void saveVisualizationDataAs(boolean saveAll,
 String filename,
 String dirName)

This method saves the LUT and opacity function for the active image. If either filename or directory is null, then the user will be prompted for a filename.

Parameters:

saveAll - boolean indicating that both lut and transfer functions should be saved. If false, then only transfer functions are saved.

filename - filename to save LUT as

dirName - directory to save LUT to

setProbeGreenColor

public void setProbeGreenColor(boolean flag)

When the probe is picked, switch the probe geometry appearance to green.

Parameters:

flag - boolean probe picked or not.

startBurn

public void startBurn()

When the burn button is clicked, invoked the start burn method to show the burnning process.

stateChanged

public void stateChanged(ChangeEvent e)

State change event, invokded by the sliders moves.

Specified by:

stateChanged in interface ChangeListener

Parameters:

e - ChangeEvent

transformPtVolumeToImage

public javax.vecmath.Point3f transformPtVolumeToImage(javax.vecmath.Point3f pt)

Transform a java3d point [-1,1] to the image volume space.

Parameters:

pt - the point in java3d space

Returns:

the equivalent point in volume space

updateBurnList

public void updateBurnList(int index)

Updates the burn name list's selected element. Called from the JPanelSurface.

Parameters:

index - selected index number.

updateProbeList

public void updateProbeList()

Update probe list.

updateProbePos

public void updateProbePos(float x,
 float y,
 float z)

Updates the probe world coordinate from the tri-planar view's mouse drag event.

Parameters:

x - float x coordinate

y - float y coordinate

z - float z coordinate

updateTargetList

public void updateTargetList()

Update target surface list from the JPanelSurface control dialog.

updateTreatmentPanel

public void updateTreatmentPanel(boolean swapBurnList)

Update the treatment panel components to correpsond to the currently selected target surface.

Parameters:

swapBurnList - whether to swap in the burn list of the currently selected target surface treatment (used when a new selection is made in the target list)

valueChanged

public void valueChanged(ListSelectionEvent kEvent)

Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.

Specified by:

valueChanged in interface ListSelectionListener

Parameters:

kEvent - ListSelection Event

withinDistance

public boolean withinDistance(float centerX,
 float centerY,
 float centerZ,
 float ptrX,
 float ptrY,
 float ptrZ,
 double r)

Check to see if the given voxel is within the sphere radius from the center point.

Parameters:

centerX - float center x coordinate

centerY - float center y coordinate

centerZ - float center z coordinate

ptrX - float given point x coordinate

ptrY - float given point x coordinate

ptrZ - float given point x coordinate

r - double given radius

Returns:

boolean true within the distance, false not.

createBoldLabel

private static JLabel createBoldLabel(String title)

Creates a label in the proper (bold) font and color.

Parameters:

title - The title of the label.

Returns:

The new label.

createLabel

private static JLabel createLabel(String title)

Creates a label in the proper font and color.

Parameters:

title - The title of the label.

Returns:

The new label.

buildBurnPackingPanel

private void buildBurnPackingPanel()

Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.

buildBurnVisPanel

private void buildBurnVisPanel()

Build the tab containing the color, opac, picking, labels, etc for burns.

buildProbeModelPanel

private void buildProbeModelPanel()

Build the tab which allows the user to change the currently used probe model.

buildProbePlacementPanel

private void buildProbePlacementPanel()

Build the tab with controls / info used in probe placement before a burn. This includes rot, trans, in/out, entry pt rotation, warning of intersection of problem regions, and the saving / loading of a problem region mapping.

buildProbeSlider

private JPanel buildProbeSlider()

Setup the probe moving control panel that include x, y, z moving sliders.

Returns:

the trans x, y, z and in/out probe movement panel.

buildTabbedPanel

private void buildTabbedPanel()

Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.

buildTargetListPanel

private JPanel buildTargetListPanel()

Build the target surface (tumor) control panel. This panel can add or remove surfaces, also changes the surface opacity.

Returns:

the target surface list panel.

buildTargetPanel

private void buildTargetPanel()

Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.

buildToolBar

private void buildToolBar()

Build the probe toolbar control.

buildTreatmentPanel

private void buildTreatmentPanel()

Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.

enableBurnTreatmentComponents

private void enableBurnTreatmentComponents(boolean flag)

Enable or disable the components on the target treatment panel.

Parameters:

flag - whether to enable the components

enableBurnVisComponents

private void enableBurnVisComponents(boolean flag)

Enable or disable the components on the burn visualization panel.

Parameters:

flag - whether to enable the components

getColorChange

private void getColorChange(Color color)

This is called when the user chooses a new color for the surface. It changes the color of the surface.

Parameters:

color - Color to change surface to.

getTreatmentInfo

private TreatmentInformation getTreatmentInfo(int index)

Get information about a treatment.

Parameters:

index - the index of the treatment to retreive

Returns:

info about a treatment

init

private void init()

Initialize the whole probe panel control layout.

loadImage

private ModelImage loadImage()

Ask the user for an image to load and return it.

Returns:

the image the user wants to load

loadVisualizationSettings

private void loadVisualizationSettings(TransferFunction lut,
 TransferFunction opac)

Loads visualization settings for this image.

Parameters:

lut - the lut transfer function

opac - the opacity transfer function

removeAllBurn

private void removeAllBurn()

Remove all the burning point geometry shapes in the volume.

removeBurn

private void removeBurn()

The action taken when the Remove button is clicked in the list box. All selected surfaces in the list box are removed from the scene graph.

saveImage

private void saveImage(ModelImage img)

Ask the user for a name to save an image as and then write it out to disk.

Parameters:

img - the image to save

startBurnPacking

private void startBurnPacking()

Start to try to choose an optimal ablation plan for the current target surface.

updateTargetLabels

private void updateTargetLabels()

Update the labels which show info about the current target surface.