Package gov.nih.mipav.view.renderer.J3D.surfaceview.rfaview

Class JPanelProbe

  • All Implemented Interfaces:
    java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener
    public class JPanelProbe
extends JPanelRendererJ3D
implements javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener
    Dialog to turn slices bounding box of surface renderer on and off, and to change the color of the frame. This dialog also control the X, Y, Z slices movements.
    Author:
    Ruida Cheng
    See Also:
    Serialized Form

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description
      (package private) class  JPanelProbe.CancelListener
      Cancel the color dialog, change nothing.
      class  JPanelProbe.DrawingPane
      Helper class for resizing.
      (package private) class  JPanelProbe.OkColorListener
      Pick up the selected color and call method to change the surface color.

      • Nested classes/interfaces inherited from class javax.swing.JPanel

        javax.swing.JPanel.AccessibleJPanel

      • Nested classes/interfaces inherited from class javax.swing.JComponent

        javax.swing.JComponent.AccessibleJComponent

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Field Summary

      Fields 
      Modifier and Type Field Description
      private javax.swing.JButton bonePresetButton
      DOCUMENT ME!
      private javax.swing.JCheckBox burnBackFaceCB
      burning point back face culling check box.
      private BurnBase burnBase
      Burn base reference.
      private javax.swing.JCheckBox burnClipCB
      burning point clipping check box.
      private int burnIndex
      Current burning point index being hightlighted.
      private javax.vecmath.Vector3f burningPtTransVector
      Burning point coordinate vector in world coordinate system.
      private javax.swing.JList burnList
      Burn list that hold the burning point names.
      private javax.swing.JButton calcButton
      Calculat button.
      private javax.vecmath.Point3f center
      Burning point coordinate.
      private javax.swing.JLabel centerLabel
      burning point center label.
      private boolean clipping
      Burning surface being clipped or not.
      private javax.swing.JButton colorButton
      Burning point color button.
      private ViewJColorChooser colorChooser
      Color chooser when the user changes the color of the surface.
      private javax.swing.JLabel colorLabel
      Burning point color label.
      private boolean culling
      Burning surface being culled ( back face bulling ) or not.
      private int cursorMode
      curreent cursor nevigation mode.
      private javax.swing.JLabel diffVolumeLabel
      Volume difference label for the current treatment.
      private javax.swing.JTextField diffVolumeText
      Volume difference text.
      private JPanelProbe.DrawingPane drawingPane
      Associate structure of the scroll pane to resize the panel properly.
      private javax.vecmath.Vector3f endPtTransVector
      End point coordinate vector in the world coordinate system.
      private javax.swing.JLabel entryPointLabel
      entry point label.
      private javax.swing.JPanel entryPointPanel
      Panel that hold the entry point roation check box.
      private javax.swing.JCheckBox entryPointRotationCB
      entry point rotation check box.
      private javax.swing.JButton liverPresetButton
      Liver segmentation preset opacity transform function control button.
      private javax.swing.JButton loadVisualizationButton
      Load button for the opacity transform function.
      private javax.swing.JLabel m_kProbeTwistLabel
      DOCUMENT ME!
      private javax.swing.JSlider m_kProbeTwistSlider
      Rotation/Twist around the direction of the probe:.
      private float maxBox
      The maximum of the fram box values.
      private static int NONE
      cursor default nevigation mode.
      private TreatmentInformation noTargetTreatment
      Treatment information to be used if the user wants to burn without any target surface.
      private float opacity
      Burning point opacity.
      private javax.swing.JLabel opacityLabel
      The opacity slider label.
      private javax.swing.JSlider opacitySlider
      burning point surface opacity slider.
      private javax.swing.JLabel[] opacitySliderLabels
      burning point surface opacity slider label.
      private ViewJFrameVolumeView parentFrame
      Volume view frame work reference.
      private Probe probe
      Probe reference.
      private javax.swing.JList probeList
      Probes list.
      private static int PROBEMOVE
      cursor probe nevigation mode.
      private javax.swing.JToggleButton probeResetButton
      Reset probe nevigation mode.
      private javax.swing.JToggleButton probeTargetButton
      Control the tri-planar probe nevigation mode.
      private javax.swing.JLabel radiusLabel
      burning point diameter label.
      private javax.swing.JLabel resultLabel
      result label to show the bone, vasculature detection information message.
      private javax.swing.JButton saveVisualizationButton
      Save button for the opacity tranform function.
      private javax.swing.JScrollPane scroller
      Scroll pane that control the resizing of the panel.
      private javax.swing.JLabel semiXLabel
      burning point semi axis X label.
      private javax.swing.JTextField semiXText
      burning point semi axis X text field.
      private javax.swing.JLabel semiYLabel
      burning point semi axis Y label.
      private javax.swing.JTextField semiYText
      burning point semi axis Y text field.
      private javax.swing.JLabel semiZLabel
      burning point semi axis Z label.
      private javax.swing.JTextField semiZText
      burning point semi axis Z text field.
      private static long serialVersionUID
      Use serialVersionUID for interoperability.
      private boolean showBurnLabels
      Flag indicates the show burning text label or not.
      private javax.swing.JCheckBox showBurnLabelsCB
      Show the burning text label checkbox.
      private javax.swing.JButton skinPresetButton
      Skin segmentation preset opacity transform function control button.
      private javax.swing.JSlider sliderX
      The probe X slider that control the probe push and pull movements.
      private boolean snapToTarget
      Whether to snap to center of a target surface when it is selected; defaults to true.
      private javax.swing.JCheckBox snapToTargetCB
      Checkbox indicating whether to snap to center of a target surface when it is selected.
      private javax.vecmath.Vector3f startPtTransVector
      Start point ( invisible ) coordinate vector in world coordinate system.
      private javax.swing.JTabbedPane tabbedPane
      The main tabbed pane in the volume view frame.
      private javax.swing.JPanel tabPanel
      The main tab contrl panel.
      private javax.swing.JList targetList
      Surface target list (tumors).
      private javax.swing.JTextField targetVolumeText
      Label containing the volume of the current target surface.
      private javax.swing.JTextField targetXText
      X label for the center coordinate of the current target surface.
      private javax.swing.JTextField targetYText
      Y label for the center coordinate of the current target surface.
      private javax.swing.JTextField targetZText
      Z label for the center coordinate of the current target surface.
      private javax.swing.JComboBox tipLengthCB
      Combo box for indicating the length of the probe tip.
      private javax.swing.JToolBar toolBar
      Tool bar.
      private javax.swing.JLabel totalVolumeLabel
      Burning points total volume label.
      private javax.swing.JTextField totalVolumeText
      Burning point total volume text.
      private javax.swing.JToggleButton traverseButton
      Control the tri-planar default view nevigation mode.
      private java.util.Vector<TreatmentInformation> treatmentVector
      List of treatment sets.
      private javax.swing.JLabel volumeLabel
      buring point volume label.
      private javax.swing.JTextField volumeText
      burning pont volume text box.
      private float xBox
      Parent frame box value.
      private javax.swing.JLabel xLabel
      burning point X, Y, Z coordinate label.
      private javax.swing.JLabel xLabelEntry
      entry point X, Y, Z coordinate label.
      private float xRes
      The resolutions of the (possibly respampled) image (the one shown in the renderer).
      private javax.swing.JSlider xSliderS
      slider that controls the probe moves along the x direction.
      private javax.swing.JTextField xText
      burning point X, Y, Z coordinate text box.
      private javax.swing.JTextField xTextEntry
      entry point X, Y, Z coordinate text box.
      private float yBox
      Parent frame box value.
      private javax.swing.JLabel yLabel
      burning point X, Y, Z coordinate label.
      private javax.swing.JLabel yLabelEntry
      entry point X, Y, Z coordinate label.
      private float yRes
      The resolutions of the (possibly respampled) image (the one shown in the renderer).
      private javax.swing.JSlider ySliderS
      slider that controls the probe moves along the y direction.
      private javax.swing.JTextField yText
      burning point X, Y, Z coordinate text box.
      private javax.swing.JTextField yTextEntry
      entry point X, Y, Z coordinate text box.
      private float zBox
      Parent frame box value.
      private javax.swing.JLabel zLabel
      burning point X, Y, Z coordinate label.
      private javax.swing.JLabel zLabelEntry
      entry point X, Y, Z coordinate label.
      private float zRes
      The resolutions of the (possibly respampled) image (the one shown in the renderer).
      private javax.swing.JSlider zSliderS
      slider that controls the probe moves along the z direction.
      private javax.swing.JTextField zText
      burning point X, Y, Z coordinate text box.
      private javax.swing.JTextField zTextEntry
      entry point X, Y, Z coordinate text box.

      • Fields inherited from class javax.swing.JComponent

        listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

      • Fields inherited from class java.awt.Component

        accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

      • Fields inherited from interface java.awt.image.ImageObserver

        ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

    • Constructor Summary

      Constructors 
      Constructor Description
      JPanelProbe​(SurfaceRender parent, ViewJFrameBase _parentFrame, float xBox, float yBox, float zBox)
      Constructor to initialize the probe control panel.

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Action perform event function that handle all the commands in the probe panel.
      private void buildBurnPackingPanel()
      Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.
      private void buildBurnVisPanel()
      Build the tab containing the color, opac, picking, labels, etc for burns.
      private void buildProbeModelPanel()
      Build the tab which allows the user to change the currently used probe model.
      private void buildProbePlacementPanel()
      Build the tab with controls / info used in probe placement before a burn.
      private javax.swing.JPanel buildProbeSlider()
      Setup the probe moving control panel that include x, y, z moving sliders.
      private void buildTabbedPanel()
      Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.
      private javax.swing.JPanel buildTargetListPanel()
      Build the target surface (tumor) control panel.
      private void buildTargetPanel()
      Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.
      private void buildToolBar()
      Build the probe toolbar control.
      private void buildTreatmentPanel()
      Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.
      private static javax.swing.JLabel createBoldLabel​(java.lang.String title)
      Creates a label in the proper (bold) font and color.
      private static javax.swing.JLabel createLabel​(java.lang.String title)
      Creates a label in the proper font and color.
      void detectTissue()
      Detect the body tissue component.
      void dispose()
      Dispose memory.
      private void enableBurnTreatmentComponents​(boolean flag)
      Enable or disable the components on the target treatment panel.
      private void enableBurnVisComponents​(boolean flag)
      Enable or disable the components on the burn visualization panel.
      void enableProbeBehavior​(boolean flag)
      Enable probe mouse behavior branch group.
      BurnBase getBurnBase()
      Get the burn base reference inside the probe control panel.
      boolean getBurnLabelFlag()
      Get the show burning point label's flag.
      javax.vecmath.Vector3f getBurnPoint()
      Get the burning point world coordinate.
      javax.media.j3d.BranchGroup getBurnRootParentBG()
      Get the burn root branch group.
      private void getColorChange​(java.awt.Color color)
      This is called when the user chooses a new color for the surface.
      SurfaceAttributes getCurSurface()
      Get the current highlight surface.
      TreatmentInformation getCurTreatment()
      Get the treatment info that matches the currently selected target surface.
      javax.vecmath.Vector3f getEndPoint()
      Get the end point world coordinate vector.
      javax.vecmath.Point3f getEntryPoint()
      Get the entry ponit world coordinate.
      javax.swing.JPanel getMainPanel()
      Get the main control panel.
      Probe getProbeBase()
      Get the probe base reference inside the burning control panel.
      javax.media.j3d.BranchGroup getProbesRootBG()
      Return the root to the probes branches.
      javax.vecmath.Vector3f getStartPoint()
      Get the start point world coordinate vector.
      SurfaceAttributes getTargetSurface()
      Return the currently targeted surface.
      private TreatmentInformation getTreatmentInfo​(int index)
      Get information about a treatment.
      private void init()
      Initialize the whole probe panel control layout.
      boolean isSnapToTarget()
      Return whether the user wants to snap to the treatment target surface.
      private ModelImage loadImage()
      Ask the user for an image to load and return it.
      void loadVisualizationDataFrom​(boolean loadAll, java.lang.String filename, java.lang.String dirName, boolean quietMode)
      This method loads the LUT and opacity transfer function for the active image.
      private void loadVisualizationSettings​(TransferFunction lut, TransferFunction opac)
      Loads visualization settings for this image.
      private void removeAllBurn()
      Remove all the burning point geometry shapes in the volume.
      private void removeBurn()
      The action taken when the Remove button is clicked in the list box.
      void removeProbingPath()
      During mouse release, remove the probing path and clear the probe color mask.
      void resizePanel​(int panelWidth, int frameHeight)
      Resizig the control panel with ViewJFrameVolumeView's frame width and height.
      private void saveImage​(ModelImage img)
      Ask the user for a name to save an image as and then write it out to disk.
      void saveVisualizationDataAs​(boolean saveAll, java.lang.String filename, java.lang.String dirName)
      This method saves the LUT and opacity function for the active image.
      void setProbeGreenColor​(boolean flag)
      When the probe is picked, switch the probe geometry appearance to green.
      void startBurn()
      When the burn button is clicked, invoked the start burn method to show the burnning process.
      private void startBurnPacking()
      Start to try to choose an optimal ablation plan for the current target surface.
      void stateChanged​(javax.swing.event.ChangeEvent e)
      State change event, invokded by the sliders moves.
      javax.vecmath.Point3f transformPtVolumeToImage​(javax.vecmath.Point3f pt)
      Transform a java3d point [-1,1] to the image volume space.
      void updateBurnList​(int index)
      Updates the burn name list's selected element.
      void updateProbeList()
      Update probe list.
      void updateProbePos​(float x, float y, float z)
      Updates the probe world coordinate from the tri-planar view's mouse drag event.
      private void updateTargetLabels()
      Update the labels which show info about the current target surface.
      void updateTargetList()
      Update target surface list from the JPanelSurface control dialog.
      void updateTreatmentPanel​(boolean swapBurnList)
      Update the treatment panel components to correpsond to the currently selected target surface.
      void valueChanged​(javax.swing.event.ListSelectionEvent kEvent)
      Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.
      boolean withinDistance​(float centerX, float centerY, float centerZ, float ptrX, float ptrY, float ptrZ, double r)
      Check to see if the given voxel is within the sphere radius from the center point.

      • Methods inherited from class javax.swing.JPanel

        getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

      • Methods inherited from class javax.swing.JComponent

        addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

      • Methods inherited from interface java.awt.event.FocusListener

        focusGained, focusLost

      • Methods inherited from interface java.awt.event.ItemListener

        itemStateChanged

      • Methods inherited from interface java.awt.event.KeyListener

        keyPressed, keyReleased, keyTyped

    • Field Detail

      • serialVersionUID

        private static final long serialVersionUID
        Use serialVersionUID for interoperability.
        See Also:
        Constant Field Values

      • NONE

        private static int NONE
        cursor default nevigation mode.

      • PROBEMOVE

        private static int PROBEMOVE
        cursor probe nevigation mode.

      • bonePresetButton

        private javax.swing.JButton bonePresetButton
        DOCUMENT ME!

      • burnBackFaceCB

        private javax.swing.JCheckBox burnBackFaceCB
        burning point back face culling check box.

      • burnBase

        private BurnBase burnBase
        Burn base reference.

      • burnClipCB

        private javax.swing.JCheckBox burnClipCB
        burning point clipping check box.

      • burnIndex

        private int burnIndex
        Current burning point index being hightlighted.

      • burningPtTransVector

        private javax.vecmath.Vector3f burningPtTransVector
        Burning point coordinate vector in world coordinate system.

      • burnList

        private javax.swing.JList burnList
        Burn list that hold the burning point names.

      • calcButton

        private javax.swing.JButton calcButton
        Calculat button.

      • center

        private javax.vecmath.Point3f center
        Burning point coordinate.

      • centerLabel

        private javax.swing.JLabel centerLabel
        burning point center label.

      • clipping

        private boolean clipping
        Burning surface being clipped or not.

      • colorButton

        private javax.swing.JButton colorButton
        Burning point color button.

      • colorChooser

        private ViewJColorChooser colorChooser
        Color chooser when the user changes the color of the surface.

      • colorLabel

        private javax.swing.JLabel colorLabel
        Burning point color label.

      • culling

        private boolean culling
        Burning surface being culled ( back face bulling ) or not.

      • cursorMode

        private int cursorMode
        curreent cursor nevigation mode.

      • diffVolumeLabel

        private javax.swing.JLabel diffVolumeLabel
        Volume difference label for the current treatment.

      • diffVolumeText

        private javax.swing.JTextField diffVolumeText
        Volume difference text.

      • drawingPane

        private JPanelProbe.DrawingPane drawingPane
        Associate structure of the scroll pane to resize the panel properly.

      • endPtTransVector

        private javax.vecmath.Vector3f endPtTransVector
        End point coordinate vector in the world coordinate system.

      • entryPointLabel

        private javax.swing.JLabel entryPointLabel
        entry point label.

      • entryPointPanel

        private javax.swing.JPanel entryPointPanel
        Panel that hold the entry point roation check box.

      • entryPointRotationCB

        private javax.swing.JCheckBox entryPointRotationCB
        entry point rotation check box.

      • liverPresetButton

        private javax.swing.JButton liverPresetButton
        Liver segmentation preset opacity transform function control button.

      • loadVisualizationButton

        private javax.swing.JButton loadVisualizationButton
        Load button for the opacity transform function.

      • m_kProbeTwistLabel

        private javax.swing.JLabel m_kProbeTwistLabel
        DOCUMENT ME!

      • m_kProbeTwistSlider

        private javax.swing.JSlider m_kProbeTwistSlider
        Rotation/Twist around the direction of the probe:.

      • maxBox

        private float maxBox
        The maximum of the fram box values.

      • noTargetTreatment

        private TreatmentInformation noTargetTreatment
        Treatment information to be used if the user wants to burn without any target surface.

      • opacity

        private float opacity
        Burning point opacity.

      • opacityLabel

        private javax.swing.JLabel opacityLabel
        The opacity slider label.

      • opacitySlider

        private javax.swing.JSlider opacitySlider
        burning point surface opacity slider.

      • opacitySliderLabels

        private javax.swing.JLabel[] opacitySliderLabels
        burning point surface opacity slider label.

      • probe

        private Probe probe
        Probe reference.

      • probeList

        private javax.swing.JList probeList
        Probes list.

      • probeResetButton

        private javax.swing.JToggleButton probeResetButton
        Reset probe nevigation mode.

      • probeTargetButton

        private javax.swing.JToggleButton probeTargetButton
        Control the tri-planar probe nevigation mode.

      • radiusLabel

        private javax.swing.JLabel radiusLabel
        burning point diameter label.

      • resultLabel

        private javax.swing.JLabel resultLabel
        result label to show the bone, vasculature detection information message.

      • saveVisualizationButton

        private javax.swing.JButton saveVisualizationButton
        Save button for the opacity tranform function.

      • scroller

        private javax.swing.JScrollPane scroller
        Scroll pane that control the resizing of the panel.

      • semiXLabel

        private javax.swing.JLabel semiXLabel
        burning point semi axis X label.

      • semiXText

        private javax.swing.JTextField semiXText
        burning point semi axis X text field.

      • semiYLabel

        private javax.swing.JLabel semiYLabel
        burning point semi axis Y label.

      • semiYText

        private javax.swing.JTextField semiYText
        burning point semi axis Y text field.

      • semiZLabel

        private javax.swing.JLabel semiZLabel
        burning point semi axis Z label.

      • semiZText

        private javax.swing.JTextField semiZText
        burning point semi axis Z text field.

      • showBurnLabels

        private boolean showBurnLabels
        Flag indicates the show burning text label or not.

      • showBurnLabelsCB

        private javax.swing.JCheckBox showBurnLabelsCB
        Show the burning text label checkbox.

      • skinPresetButton

        private javax.swing.JButton skinPresetButton
        Skin segmentation preset opacity transform function control button.

      • sliderX

        private javax.swing.JSlider sliderX
        The probe X slider that control the probe push and pull movements.

      • snapToTarget

        private boolean snapToTarget
        Whether to snap to center of a target surface when it is selected; defaults to true.

      • snapToTargetCB

        private javax.swing.JCheckBox snapToTargetCB
        Checkbox indicating whether to snap to center of a target surface when it is selected.

      • startPtTransVector

        private javax.vecmath.Vector3f startPtTransVector
        Start point ( invisible ) coordinate vector in world coordinate system.

      • tabbedPane

        private javax.swing.JTabbedPane tabbedPane
        The main tabbed pane in the volume view frame.

      • tabPanel

        private javax.swing.JPanel tabPanel
        The main tab contrl panel.

      • targetList

        private javax.swing.JList targetList
        Surface target list (tumors).

      • targetVolumeText

        private javax.swing.JTextField targetVolumeText
        Label containing the volume of the current target surface.

      • targetXText

        private javax.swing.JTextField targetXText
        X label for the center coordinate of the current target surface.

      • targetYText

        private javax.swing.JTextField targetYText
        Y label for the center coordinate of the current target surface.

      • targetZText

        private javax.swing.JTextField targetZText
        Z label for the center coordinate of the current target surface.

      • tipLengthCB

        private javax.swing.JComboBox tipLengthCB
        Combo box for indicating the length of the probe tip. Currently used just by CoolTip probe.

      • toolBar

        private javax.swing.JToolBar toolBar
        Tool bar.

      • totalVolumeLabel

        private javax.swing.JLabel totalVolumeLabel
        Burning points total volume label.

      • totalVolumeText

        private javax.swing.JTextField totalVolumeText
        Burning point total volume text.

      • traverseButton

        private javax.swing.JToggleButton traverseButton
        Control the tri-planar default view nevigation mode.

      • treatmentVector

        private java.util.Vector<TreatmentInformation> treatmentVector
        List of treatment sets.

      • volumeLabel

        private javax.swing.JLabel volumeLabel
        buring point volume label.

      • volumeText

        private javax.swing.JTextField volumeText
        burning pont volume text box.

      • xBox

        private float xBox
        Parent frame box value.

      • yBox

        private float yBox
        Parent frame box value.

      • zBox

        private float zBox
        Parent frame box value.

      • xLabel

        private javax.swing.JLabel xLabel
        burning point X, Y, Z coordinate label.

      • yLabel

        private javax.swing.JLabel yLabel
        burning point X, Y, Z coordinate label.

      • zLabel

        private javax.swing.JLabel zLabel
        burning point X, Y, Z coordinate label.

      • xLabelEntry

        private javax.swing.JLabel xLabelEntry
        entry point X, Y, Z coordinate label.

      • yLabelEntry

        private javax.swing.JLabel yLabelEntry
        entry point X, Y, Z coordinate label.

      • zLabelEntry

        private javax.swing.JLabel zLabelEntry
        entry point X, Y, Z coordinate label.

      • xRes

        private float xRes
        The resolutions of the (possibly respampled) image (the one shown in the renderer).

      • yRes

        private float yRes
        The resolutions of the (possibly respampled) image (the one shown in the renderer).

      • zRes

        private float zRes
        The resolutions of the (possibly respampled) image (the one shown in the renderer).

      • xSliderS

        private javax.swing.JSlider xSliderS
        slider that controls the probe moves along the x direction.

      • xText

        private javax.swing.JTextField xText
        burning point X, Y, Z coordinate text box.

      • yText

        private javax.swing.JTextField yText
        burning point X, Y, Z coordinate text box.

      • zText

        private javax.swing.JTextField zText
        burning point X, Y, Z coordinate text box.

      • xTextEntry

        private javax.swing.JTextField xTextEntry
        entry point X, Y, Z coordinate text box.

      • yTextEntry

        private javax.swing.JTextField yTextEntry
        entry point X, Y, Z coordinate text box.

      • zTextEntry

        private javax.swing.JTextField zTextEntry
        entry point X, Y, Z coordinate text box.

      • ySliderS

        private javax.swing.JSlider ySliderS
        slider that controls the probe moves along the y direction.

      • zSliderS

        private javax.swing.JSlider zSliderS
        slider that controls the probe moves along the z direction.

    • Constructor Detail

      • JPanelProbe

        public JPanelProbe​(SurfaceRender parent,
                   ViewJFrameBase _parentFrame,
                   float xBox,
                   float yBox,
                   float zBox)
        Constructor to initialize the probe control panel.
        Parameters:
        parent - SurfaceRender reference.
        _parentFrame - ViewJFrameVolumeView reference.
        xBox - DOCUMENT ME!
        yBox - DOCUMENT ME!
        zBox - DOCUMENT ME!

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Action perform event function that handle all the commands in the probe panel.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Specified by:
        actionPerformed in class JPanelRendererBase
        Parameters:
        event - Action Event

      • detectTissue

        public void detectTissue()
        Detect the body tissue component. If the bone or the vasculature is detected, draw the corresponding color along the probing path, also, show the detection message in the search panel.

      • dispose

        public void dispose()
        Dispose memory.

      • enableProbeBehavior

        public void enableProbeBehavior​(boolean flag)
        Enable probe mouse behavior branch group.
        Parameters:
        flag - true means turn on, false means turn off.

      • getBurnBase

        public BurnBase getBurnBase()
        Get the burn base reference inside the probe control panel.
        Returns:
        BurnBase

      • getBurnLabelFlag

        public boolean getBurnLabelFlag()
        Get the show burning point label's flag.
        Returns:
        boolean show label or not.

      • getBurnPoint

        public javax.vecmath.Vector3f getBurnPoint()
        Get the burning point world coordinate.
        Returns:
        Vector3f burning point tranform vector.

      • getBurnRootParentBG

        public javax.media.j3d.BranchGroup getBurnRootParentBG()
        Get the burn root branch group. JPanelSurface calls this method during the geometry picking procedure.
        Returns:
        BranchGroup

      • getCurSurface

        public SurfaceAttributes getCurSurface()
        Get the current highlight surface.
        Returns:
        SurfaceAttributes

      • getCurTreatment

        public TreatmentInformation getCurTreatment()
        Get the treatment info that matches the currently selected target surface.
        Returns:
        info about a treatment

      • getEndPoint

        public javax.vecmath.Vector3f getEndPoint()
        Get the end point world coordinate vector.
        Returns:
        Vector3f end point transform vector.

      • getEntryPoint

        public javax.vecmath.Point3f getEntryPoint()
        Get the entry ponit world coordinate.
        Returns:
        Point3f entry ponit transform vector.

      • getMainPanel

        public javax.swing.JPanel getMainPanel()
        Get the main control panel.
        Specified by:
        getMainPanel in class JPanelRendererBase
        Returns:
        JPanel main control panel.

      • getProbeBase

        public Probe getProbeBase()
        Get the probe base reference inside the burning control panel.
        Returns:
        Probe

      • getProbesRootBG

        public javax.media.j3d.BranchGroup getProbesRootBG()
        Return the root to the probes branches.
        Returns:
        BranchGroup probes branch group

      • getStartPoint

        public javax.vecmath.Vector3f getStartPoint()
        Get the start point world coordinate vector.
        Returns:
        Vector3f start point tranform vector.

      • getTargetSurface

        public SurfaceAttributes getTargetSurface()
        Return the currently targeted surface.
        Returns:
        the attributes of the current target surface

      • isSnapToTarget

        public boolean isSnapToTarget()
        Return whether the user wants to snap to the treatment target surface.
        Returns:
        whether to snap to the target

      • loadVisualizationDataFrom

        public void loadVisualizationDataFrom​(boolean loadAll,
                                      java.lang.String filename,
                                      java.lang.String dirName,
                                      boolean quietMode)
        This method loads the LUT and opacity transfer function for the active image.
        Parameters:
        loadAll - boolean indicating that both lut and transfer functions should be loaded. If false, then only transfer functions are loaded.
        filename - filename to load LUT from
        dirName - directory to load LUT from
        quietMode - if true indicates that warnings should not be displayed.

      • removeProbingPath

        public void removeProbingPath()
        During mouse release, remove the probing path and clear the probe color mask.

      • resizePanel

        public void resizePanel​(int panelWidth,
                        int frameHeight)
        Resizig the control panel with ViewJFrameVolumeView's frame width and height.
        Overrides:
        resizePanel in class JPanelRendererBase
        Parameters:
        panelWidth - the panel should be
        frameHeight - the height of the renderer frame

      • saveVisualizationDataAs

        public void saveVisualizationDataAs​(boolean saveAll,
                                    java.lang.String filename,
                                    java.lang.String dirName)
        This method saves the LUT and opacity function for the active image. If either filename or directory is null, then the user will be prompted for a filename.
        Parameters:
        saveAll - boolean indicating that both lut and transfer functions should be saved. If false, then only transfer functions are saved.
        filename - filename to save LUT as
        dirName - directory to save LUT to

      • setProbeGreenColor

        public void setProbeGreenColor​(boolean flag)
        When the probe is picked, switch the probe geometry appearance to green.
        Parameters:
        flag - boolean probe picked or not.

      • startBurn

        public void startBurn()
        When the burn button is clicked, invoked the start burn method to show the burnning process.

      • stateChanged

        public void stateChanged​(javax.swing.event.ChangeEvent e)
        State change event, invokded by the sliders moves.
        Specified by:
        stateChanged in interface javax.swing.event.ChangeListener
        Parameters:
        e - ChangeEvent

      • transformPtVolumeToImage

        public javax.vecmath.Point3f transformPtVolumeToImage​(javax.vecmath.Point3f pt)
        Transform a java3d point [-1,1] to the image volume space.
        Parameters:
        pt - the point in java3d space
        Returns:
        the equivalent point in volume space

      • updateBurnList

        public void updateBurnList​(int index)
        Updates the burn name list's selected element. Called from the JPanelSurface.
        Parameters:
        index - selected index number.

      • updateProbeList

        public void updateProbeList()
        Update probe list.

      • updateProbePos

        public void updateProbePos​(float x,
                           float y,
                           float z)
        Updates the probe world coordinate from the tri-planar view's mouse drag event.
        Parameters:
        x - float x coordinate
        y - float y coordinate
        z - float z coordinate

      • updateTargetList

        public void updateTargetList()
        Update target surface list from the JPanelSurface control dialog.

      • updateTreatmentPanel

        public void updateTreatmentPanel​(boolean swapBurnList)
        Update the treatment panel components to correpsond to the currently selected target surface.
        Parameters:
        swapBurnList - whether to swap in the burn list of the currently selected target surface treatment (used when a new selection is made in the target list)

      • valueChanged

        public void valueChanged​(javax.swing.event.ListSelectionEvent kEvent)
        Value changed event, which invoked by probe name list, burn name list, surface name list, burn param name list.
        Specified by:
        valueChanged in interface javax.swing.event.ListSelectionListener
        Parameters:
        kEvent - ListSelection Event

      • withinDistance

        public boolean withinDistance​(float centerX,
                              float centerY,
                              float centerZ,
                              float ptrX,
                              float ptrY,
                              float ptrZ,
                              double r)
        Check to see if the given voxel is within the sphere radius from the center point.
        Parameters:
        centerX - float center x coordinate
        centerY - float center y coordinate
        centerZ - float center z coordinate
        ptrX - float given point x coordinate
        ptrY - float given point x coordinate
        ptrZ - float given point x coordinate
        r - double given radius
        Returns:
        boolean true within the distance, false not.

      • createBoldLabel

        private static javax.swing.JLabel createBoldLabel​(java.lang.String title)
        Creates a label in the proper (bold) font and color.
        Parameters:
        title - The title of the label.
        Returns:
        The new label.

      • createLabel

        private static javax.swing.JLabel createLabel​(java.lang.String title)
        Creates a label in the proper font and color.
        Parameters:
        title - The title of the label.
        Returns:
        The new label.

      • buildBurnPackingPanel

        private void buildBurnPackingPanel()
        Build the tab panel containing ablation (sphere/ellipsoid) packing parameters, etc.

      • buildBurnVisPanel

        private void buildBurnVisPanel()
        Build the tab containing the color, opac, picking, labels, etc for burns.

      • buildProbeModelPanel

        private void buildProbeModelPanel()
        Build the tab which allows the user to change the currently used probe model.

      • buildProbePlacementPanel

        private void buildProbePlacementPanel()
        Build the tab with controls / info used in probe placement before a burn. This includes rot, trans, in/out, entry pt rotation, warning of intersection of problem regions, and the saving / loading of a problem region mapping.

      • buildProbeSlider

        private javax.swing.JPanel buildProbeSlider()
        Setup the probe moving control panel that include x, y, z moving sliders.
        Returns:
        the trans x, y, z and in/out probe movement panel.

      • buildTabbedPanel

        private void buildTabbedPanel()
        Build the four tabbed panes, probe control pane, burn control pane, burn parameter control pane, and demo pane.

      • buildTargetListPanel

        private javax.swing.JPanel buildTargetListPanel()
        Build the target surface (tumor) control panel. This panel can add or remove surfaces, also changes the surface opacity.
        Returns:
        the target surface list panel.

      • buildTargetPanel

        private void buildTargetPanel()
        Build the tab which allows the user to pick the current tumor to target, to load/remove tumor surfaces and show tumor position and volume info.

      • buildToolBar

        private void buildToolBar()
        Build the probe toolbar control.

      • buildTreatmentPanel

        private void buildTreatmentPanel()
        Build the tab containing ablation treatment information, including a list of burns; burn removal, position and volume; comparison of current tumor vs current set of burns.

      • enableBurnTreatmentComponents

        private void enableBurnTreatmentComponents​(boolean flag)
        Enable or disable the components on the target treatment panel.
        Parameters:
        flag - whether to enable the components

      • enableBurnVisComponents

        private void enableBurnVisComponents​(boolean flag)
        Enable or disable the components on the burn visualization panel.
        Parameters:
        flag - whether to enable the components

      • getColorChange

        private void getColorChange​(java.awt.Color color)
        This is called when the user chooses a new color for the surface. It changes the color of the surface.
        Parameters:
        color - Color to change surface to.

      • getTreatmentInfo

        private TreatmentInformation getTreatmentInfo​(int index)
        Get information about a treatment.
        Parameters:
        index - the index of the treatment to retreive
        Returns:
        info about a treatment

      • init

        private void init()
        Initialize the whole probe panel control layout.

      • loadImage

        private ModelImage loadImage()
        Ask the user for an image to load and return it.
        Returns:
        the image the user wants to load

      • loadVisualizationSettings

        private void loadVisualizationSettings​(TransferFunction lut,
                                       TransferFunction opac)
        Loads visualization settings for this image.
        Parameters:
        lut - the lut transfer function
        opac - the opacity transfer function

      • removeAllBurn

        private void removeAllBurn()
        Remove all the burning point geometry shapes in the volume.

      • removeBurn

        private void removeBurn()
        The action taken when the Remove button is clicked in the list box. All selected surfaces in the list box are removed from the scene graph.

      • saveImage

        private void saveImage​(ModelImage img)
        Ask the user for a name to save an image as and then write it out to disk.
        Parameters:
        img - the image to save

      • startBurnPacking

        private void startBurnPacking()
        Start to try to choose an optimal ablation plan for the current target surface.

      • updateTargetLabels

        private void updateTargetLabels()
        Update the labels which show info about the current target surface.