Package gov.nih.mipav.model.file

Class FilePolylineVOIXML

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileXML

gov.nih.mipav.model.file.FilePolylineVOIXML

public class FilePolylineVOIXML
extends FileXML

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	FilePolylineVOIXML.MyXMLHandler	Handle events generated while parsing the XML file.

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

FileXML.XMLAttributes

Field Summary

Fields

Modifier and Type	Field	Description
(package private) float[]	box
(package private) int[]	direction
private java.lang.String	fileDir	File directory where the VOI is to read or written.
private java.lang.String	fileName	File name of the VOI.
(package private) boolean	flip
(package private) double[][]	inverseDicomArray
(package private) float[]	origin
private static java.lang.String	W3C_XML_SCHEMA	The W3C XML schema.

Fields inherited from class gov.nih.mipav.model.file.FileXML

bw, fileInfo, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FilePolylineVOIXML(java.lang.String fileName, java.lang.String fileDir)

Method Summary

Modifier and Type	Method	Description
float[]	getBox()
int[]	getDirection()
boolean	getFlip()
double[][]	getInverseDicomArray()
float[]	getOrigin()
java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>	readVOI(boolean doLabel)	This method read a VOI file that has been saved in the MIPAV VOI format.
private boolean	readXML(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordVector)

Methods inherited from class gov.nih.mipav.model.file.FileXML

closedTag, closedTag, closedTag, finalize, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

W3C_XML_SCHEMA

private static final java.lang.String W3C_XML_SCHEMA

The W3C XML schema.

See Also:

Constant Field Values

fileDir

private java.lang.String fileDir

File directory where the VOI is to read or written.

fileName

private java.lang.String fileName

File name of the VOI.

box

float[] box

direction

int[] direction

origin

float[] origin

inverseDicomArray

double[][] inverseDicomArray

flip

boolean flip

Constructor Detail

FilePolylineVOIXML

public FilePolylineVOIXML(java.lang.String fileName,
                          java.lang.String fileDir)
                   throws java.io.IOException

Throws:

java.io.IOException

Method Detail

readVOI

public java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> readVOI(boolean doLabel)
                                                                       throws java.io.IOException

This method read a VOI file that has been saved in the MIPAV VOI format.

Parameters:

doLabel - boolean telling to read the files as VOITexts (labels)

Returns:

the VOI read off the disk

Throws:

java.io.IOException - if there is an error reading the file

getBox

public float[] getBox()

getDirection

public int[] getDirection()

getOrigin

public float[] getOrigin()

getInverseDicomArray

public double[][] getInverseDicomArray()

getFlip

public boolean getFlip()

readXML

private boolean readXML(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordVector)