java.lang.Object
- gov.nih.mipav.model.file.FileBase
- - gov.nih.mipav.model.file.FileXML
  - - gov.nih.mipav.model.file.FilePolylineVOIXML

public class FilePolylineVOIXML
extends FileXML

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class FilePolylineVOIXML.MyXMLHandler
Handle events generated while parsing the XML file.
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML
  FileXML.XMLAttributes

Field Summary

Fields
Modifier and Type	Field	Description
`(package private) float[]`	`box`
`(package private) int[]`	`direction`
`private java.lang.String`	`fileDir`	File directory where the VOI is to read or written.
`private java.lang.String`	`fileName`	File name of the VOI.
`(package private) boolean`	`flip`
`(package private) double[][]`	`inverseDicomArray`
`(package private) float[]`	`origin`
`private static java.lang.String`	`W3C_XML_SCHEMA`	The W3C XML schema.

Fields inherited from class gov.nih.mipav.model.file.FileXML
bw, fileInfo, m_kHandler, MIPAV_HEADER, pInterface, TAB, tabLevel, XML_ENCODING, XML_HEADER

Fields inherited from class gov.nih.mipav.model.file.FileBase
BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors
Constructor Description

FilePolylineVOIXML(java.lang.String fileName, java.lang.String fileDir)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`float[]`	`getBox()`
`int[]`	`getDirection()`
`boolean`	`getFlip()`
`double[][]`	`getInverseDicomArray()`
`float[]`	`getOrigin()`
`java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`readVOI(boolean doLabel)`	This method read a VOI file that has been saved in the MIPAV VOI format.
`private boolean`	`readXML(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordVector)`

Methods inherited from class gov.nih.mipav.model.file.FileXML
closedTag, closedTag, closedTag, finalize, openTag, readHeader, setPBar

Methods inherited from class gov.nih.mipav.model.file.FileBase
addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- W3C_XML_SCHEMA
```
private static final java.lang.String W3C_XML_SCHEMA
```
  The W3C XML schema.
  
  See Also:
  
  Constant Field Values
- fileDir
```
private java.lang.String fileDir
```
  File directory where the VOI is to read or written.
- fileName
```
private java.lang.String fileName
```
  File name of the VOI.
- box
```
float[] box
```
- direction
```
int[] direction
```
- origin
```
float[] origin
```
- inverseDicomArray
```
double[][] inverseDicomArray
```
- flip
```
boolean flip
```

Constructor Detail

FilePolylineVOIXML

public FilePolylineVOIXML(java.lang.String fileName,
                          java.lang.String fileDir)
                   throws java.io.IOException

Throws:: java.io.IOException

Method Detail

readVOI
```
public java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> readVOI(boolean doLabel)
                                                                       throws java.io.IOException
```
This method read a VOI file that has been saved in the MIPAV VOI format.

Parameters:

doLabel - boolean telling to read the files as VOITexts (labels)

Returns:

the VOI read off the disk

Throws:

java.io.IOException - if there is an error reading the file

getBox
```
public float[] getBox()
```

getDirection
```
public int[] getDirection()
```

getOrigin
```
public float[] getOrigin()
```

getInverseDicomArray

public double[][] getInverseDicomArray()

getFlip
```
public boolean getFlip()
```

readXML

private boolean readXML(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordVector)

Class FilePolylineVOIXML

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileXML

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileXML

Fields inherited from class gov.nih.mipav.model.file.FileBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileXML

Methods inherited from class gov.nih.mipav.model.file.FileBase

Methods inherited from class java.lang.Object

Field Detail

W3C_XML_SCHEMA

fileDir

fileName

box

direction

origin

inverseDicomArray

flip

Constructor Detail

FilePolylineVOIXML

Method Detail

readVOI

getBox

getDirection

getOrigin

getInverseDicomArray

getFlip

readXML