Package gov.nih.mipav.view.dialogs

Class JDialogMorphologicalReconstruction

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogMorphologicalReconstruction extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery
Dialog to get user input, then call the algorithm. The user has the option to generate a new image or replace the source image. In addition the user selects if the algorithm is applied to whole image or to the VOI regions. It should be noted that the algorithms are executed in their own threads.
Version:
1.0 October 18, 2016
Author:
William Gandler
See Also:

  • Field Details

    • comboBoxKernel

      private JComboBox comboBoxKernel
      DOCUMENT ME!

    • do25D

      private boolean do25D
      DOCUMENT ME!

    • image

      private ModelImage image
      DOCUMENT ME!

    • image25D

      private JCheckBox image25D
      DOCUMENT ME!

    • itersD

      private int itersD
      or if the source image is to be replaced.

    • itersE

      private int itersE
      DOCUMENT ME!

    • kernel

      private int kernel
      DOCUMENT ME!

    • kernelSize

      private float kernelSize
      DOCUMENT ME!

    • labelKernel

      private JLabel labelKernel
      DOCUMENT ME!

    • labelKernelSize

      private JLabel labelKernelSize
      DOCUMENT ME!

    • labelNIterD

      private JLabel labelNIterD
      DOCUMENT ME!

    • labelNIterE

      private JLabel labelNIterE
      DOCUMENT ME!

    • maskPanel

      private JPanel maskPanel
      DOCUMENT ME!

    • reconAlgo25D

      private AlgorithmMorphology25D reconAlgo25D
      DOCUMENT ME!

    • reconAlgo2D

      private AlgorithmMorphology2D reconAlgo2D
      DOCUMENT ME!

    • reconAlgo3D

      private AlgorithmMorphology3D reconAlgo3D
      DOCUMENT ME!

    • gsReconAlgo2D

      private AlgorithmGrayScaleMorphology2D gsReconAlgo2D

    • gsReconAlgo25D

      private AlgorithmGrayScaleMorphology25D gsReconAlgo25D

    • gsReconAlgo3D

      private AlgorithmGrayScaleMorphology3D gsReconAlgo3D

    • morphologyGroup

      private ButtonGroup morphologyGroup

    • binaryButton

      private JRadioButton binaryButton

    • grayScaleButton

      private JRadioButton grayScaleButton

    • algorithmGroup

      private ButtonGroup algorithmGroup

    • geodesicDilationButton

      private JRadioButton geodesicDilationButton

    • geodesicErosionButton

      private JRadioButton geodesicErosionButton

    • reconstructionByDilationButton

      private JRadioButton reconstructionByDilationButton

    • reconstructionByErosionButton

      private JRadioButton reconstructionByErosionButton

    • openingByReconstructionButton

      private JRadioButton openingByReconstructionButton

    • closingByReconstructionButton

      private JRadioButton closingByReconstructionButton

    • binaryMorphology

      private boolean binaryMorphology

    • resultImage

      private ModelImage resultImage
      DOCUMENT ME!

    • textKernelSize

      private JTextField textKernelSize
      DOCUMENT ME!

    • textNIterD

      private JTextField textNIterD
      DOCUMENT ME!

    • textNIterE

      private JTextField textNIterE
      DOCUMENT ME!

    • titles

      private String[] titles
      DOCUMENT ME!

    • userInterface

      private ViewUserInterface userInterface
      DOCUMENT ME!

    • outputPanel

      private JPanelAlgorithmOutputOptions outputPanel

    • markerLabel

      private JLabel markerLabel

    • maskLabel

      private JLabel maskLabel

    • imageComboBox

      private JComboBox imageComboBox

    • geodesicSizeLabel

      private JLabel geodesicSizeLabel

    • geodesicSizeText

      private JTextField geodesicSizeText

    • geodesicSize

      private int geodesicSize

    • maskImage

      private ModelImage maskImage

    • method

      private int method

  • Constructor Details

    • JDialogMorphologicalReconstruction

      public JDialogMorphologicalReconstruction()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogMorphologicalReconstruction

      public JDialogMorphologicalReconstruction(Frame theParentFrame, ModelImage im)
      Constructor.
      Parameters:
      theParentFrame - parent frame
      im - source image

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • getResultImage

      public ModelImage getResultImage()
      Accessor that returns the image.
      Returns:
      The result image

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • itemStateChanged

      public void itemStateChanged(ItemEvent event)
      itemStateChanged - unchanged.
      Specified by:
      itemStateChanged in interface ItemListener
      Overrides:
      itemStateChanged in class JDialogBase
      Parameters:
      event - DOCUMENT ME!

    • setImage25D

      public void setImage25D(boolean b)
      Process the image in 2.5D.
      Parameters:
      b - whether to do 2.5D morphology

    • setKernelSize

      public void setKernelSize(float s)
      Accessor that sets the kernel size.
      Parameters:
      s - the desired kernel size

    • setKernelType

      public void setKernelType(int krnl)
      Accessor that sets the kernel type to use.
      Parameters:
      krnl - the kernel type to use (either AlgorithmMorphology2D.CONNECTED4, AlgorithmMorphology.CONNECTED8, AlgorithmMorphology2D.CONNECTED12, AlgorithmMorphology2D.SIZED_CIRCLE, AlgorithmMorphology3D.CONNECTED6, AlgorithmMorphology3D.CONNECTED26, AlgorithmMorphology3D.CONNECTED24, AlgorithmMorphology3D.SIZED_SPHERE (or the ones in AlgorithmMorphology25D))

    • setNumDilations

      public void setNumDilations(int n)
      Accessor that sets the number of dilations to perform.
      Parameters:
      n - The number of erosions to do.

    • setNumErosions

      public void setNumErosions(int n)
      Accessor that sets the number of erosions to perform.
      Parameters:
      n - The number of erosions to do.

    • setMethod

      public void setMethod(int method)
      Parameters:
      method -

    • setGeodesicSize

      public void setGeodesicSize(int geodesicSize)
      Parameters:
      geodesicSize -

    • buildComboBox

      private void buildComboBox()
      buildComboBox.

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • init

      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.

    • buildComboBox

      private JComboBox buildComboBox(ModelImage image)
      Builds a list of images. Returns combobox. List must be all color or all black and white.
      Parameters:
      image - DOCUMENT ME!
      Returns:
      Newly created combo box.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.

    • getActionMetadata

      public ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      Specified by:
      getActionMetadata in interface ActionDiscovery
      Returns:
      Metadata for this action.

    • createInputParameters

      public ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      Specified by:
      createInputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the inputs of this algorithm.

    • createOutputParameters

      public ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      Specified by:
      createOutputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the outputs of this algorithm.

    • getOutputImageName

      public String getOutputImageName(String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      Specified by:
      getOutputImageName in interface ActionDiscovery
      Parameters:
      imageParamName - The output image parameter label for which to get the image name.
      Returns:
      The image name of the requested output image parameter label.

    • isActionComplete

      public boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      Specified by:
      isActionComplete in interface ActionDiscovery
      Returns:
      True, if the action is complete. False, if the action failed or is still running.