java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogMorphologicalReconstruction

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogMorphologicalReconstruction
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery
```
Dialog to get user input, then call the algorithm. The user has the option to generate a new image or replace the source image. In addition the user selects if the algorithm is applied to whole image or to the VOI regions. It should be noted that the algorithms are executed in their own threads.

Version:

1.0 October 18, 2016

Author:

William Gandler

See Also:

AlgorithmMorphology2D, AlgorithmMorphology25D, AlgorithmMorphology3D, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.ButtonGroup`	`algorithmGroup`
`private javax.swing.JRadioButton`	`binaryButton`
`private boolean`	`binaryMorphology`
`private javax.swing.JRadioButton`	`closingByReconstructionButton`
`private javax.swing.JComboBox`	`comboBoxKernel`	DOCUMENT ME!
`private boolean`	`do25D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`geodesicDilationButton`
`private javax.swing.JRadioButton`	`geodesicErosionButton`
`private int`	`geodesicSize`
`private javax.swing.JLabel`	`geodesicSizeLabel`
`private javax.swing.JTextField`	`geodesicSizeText`
`private javax.swing.JRadioButton`	`grayScaleButton`
`private AlgorithmGrayScaleMorphology25D`	`gsReconAlgo25D`
`private AlgorithmGrayScaleMorphology2D`	`gsReconAlgo2D`
`private AlgorithmGrayScaleMorphology3D`	`gsReconAlgo3D`
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`image25D`	DOCUMENT ME!
`private javax.swing.JComboBox`	`imageComboBox`
`private int`	`itersD`	or if the source image is to be replaced.
`private int`	`itersE`	DOCUMENT ME!
`private int`	`kernel`	DOCUMENT ME!
`private float`	`kernelSize`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelKernel`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelKernelSize`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelNIterD`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelNIterE`	DOCUMENT ME!
`private javax.swing.JLabel`	`markerLabel`
`private ModelImage`	`maskImage`
`private javax.swing.JLabel`	`maskLabel`
`private javax.swing.JPanel`	`maskPanel`	DOCUMENT ME!
`private int`	`method`
`private javax.swing.ButtonGroup`	`morphologyGroup`
`private javax.swing.JRadioButton`	`openingByReconstructionButton`
`private JPanelAlgorithmOutputOptions`	`outputPanel`
`private AlgorithmMorphology25D`	`reconAlgo25D`	DOCUMENT ME!
`private AlgorithmMorphology2D`	`reconAlgo2D`	DOCUMENT ME!
`private AlgorithmMorphology3D`	`reconAlgo3D`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`reconstructionByDilationButton`
`private javax.swing.JRadioButton`	`reconstructionByErosionButton`
`private ModelImage`	`resultImage`	DOCUMENT ME!
`private javax.swing.JTextField`	`textKernelSize`	DOCUMENT ME!
`private javax.swing.JTextField`	`textNIterD`	DOCUMENT ME!
`private javax.swing.JTextField`	`textNIterE`	DOCUMENT ME!
`private java.lang.String[]`	`titles`	DOCUMENT ME!
`private ViewUserInterface`	`userInterface`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogMorphologicalReconstruction()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogMorphologicalReconstruction(java.awt.Frame theParentFrame, ModelImage im)`	Constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`private void`	`buildComboBox()`	buildComboBox.
`private javax.swing.JComboBox`	`buildComboBox(ModelImage image)`	Builds a list of images.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`ModelImage`	`getResultImage()`	Accessor that returns the image.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	itemStateChanged - unchanged.
`void`	`setGeodesicSize(int geodesicSize)`
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setImage25D(boolean b)`	Process the image in 2.5D.
`void`	`setKernelSize(float s)`	Accessor that sets the kernel size.
`void`	`setKernelType(int krnl)`	Accessor that sets the kernel type to use.
`void`	`setMethod(int method)`
`void`	`setNumDilations(int n)`	Accessor that sets the number of dilations to perform.
`void`	`setNumErosions(int n)`	Accessor that sets the number of erosions to perform.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

- Field Detail
  - comboBoxKernel
```
private javax.swing.JComboBox comboBoxKernel
```
    DOCUMENT ME!
  - do25D
```
private boolean do25D
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - image25D
```
private javax.swing.JCheckBox image25D
```
    DOCUMENT ME!
  - itersD
```
private int itersD
```
    or if the source image is to be replaced.
  - itersE
```
private int itersE
```
    DOCUMENT ME!
  - kernel
```
private int kernel
```
    DOCUMENT ME!
  - kernelSize
```
private float kernelSize
```
    DOCUMENT ME!
  - labelKernel
```
private javax.swing.JLabel labelKernel
```
    DOCUMENT ME!
  - labelKernelSize
```
private javax.swing.JLabel labelKernelSize
```
    DOCUMENT ME!
  - labelNIterD
```
private javax.swing.JLabel labelNIterD
```
    DOCUMENT ME!
  - labelNIterE
```
private javax.swing.JLabel labelNIterE
```
    DOCUMENT ME!
  - maskPanel
```
private javax.swing.JPanel maskPanel
```
    DOCUMENT ME!
  - reconAlgo25D
```
private AlgorithmMorphology25D reconAlgo25D
```
    DOCUMENT ME!
  - reconAlgo2D
```
private AlgorithmMorphology2D reconAlgo2D
```
    DOCUMENT ME!
  - reconAlgo3D
```
private AlgorithmMorphology3D reconAlgo3D
```
    DOCUMENT ME!
  - gsReconAlgo2D
```
private AlgorithmGrayScaleMorphology2D gsReconAlgo2D
```
  - gsReconAlgo25D
```
private AlgorithmGrayScaleMorphology25D gsReconAlgo25D
```
  - gsReconAlgo3D
```
private AlgorithmGrayScaleMorphology3D gsReconAlgo3D
```
  - morphologyGroup
```
private javax.swing.ButtonGroup morphologyGroup
```
  - binaryButton
```
private javax.swing.JRadioButton binaryButton
```
  - grayScaleButton
```
private javax.swing.JRadioButton grayScaleButton
```
  - algorithmGroup
```
private javax.swing.ButtonGroup algorithmGroup
```
  - geodesicDilationButton
```
private javax.swing.JRadioButton geodesicDilationButton
```
  - geodesicErosionButton
```
private javax.swing.JRadioButton geodesicErosionButton
```
  - reconstructionByDilationButton
```
private javax.swing.JRadioButton reconstructionByDilationButton
```
  - reconstructionByErosionButton
```
private javax.swing.JRadioButton reconstructionByErosionButton
```
  - openingByReconstructionButton
```
private javax.swing.JRadioButton openingByReconstructionButton
```
  - closingByReconstructionButton
```
private javax.swing.JRadioButton closingByReconstructionButton
```
  - binaryMorphology
```
private boolean binaryMorphology
```
  - resultImage
```
private ModelImage resultImage
```
    DOCUMENT ME!
  - textKernelSize
```
private javax.swing.JTextField textKernelSize
```
    DOCUMENT ME!
  - textNIterD
```
private javax.swing.JTextField textNIterD
```
    DOCUMENT ME!
  - textNIterE
```
private javax.swing.JTextField textNIterE
```
    DOCUMENT ME!
  - titles
```
private java.lang.String[] titles
```
    DOCUMENT ME!
  - userInterface
```
private ViewUserInterface userInterface
```
    DOCUMENT ME!
  - outputPanel
```
private JPanelAlgorithmOutputOptions outputPanel
```
  - markerLabel
```
private javax.swing.JLabel markerLabel
```
  - maskLabel
```
private javax.swing.JLabel maskLabel
```
  - imageComboBox
```
private javax.swing.JComboBox imageComboBox
```
  - geodesicSizeLabel
```
private javax.swing.JLabel geodesicSizeLabel
```
  - geodesicSizeText
```
private javax.swing.JTextField geodesicSizeText
```
  - geodesicSize
```
private int geodesicSize
```
  - maskImage
```
private ModelImage maskImage
```
  - method
```
private int method
```
- Constructor Detail
  - JDialogMorphologicalReconstruction
```
public JDialogMorphologicalReconstruction()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogMorphologicalReconstruction
```
public JDialogMorphologicalReconstruction(java.awt.Frame theParentFrame,
                                          ModelImage im)
```
    Constructor.
    
    Parameters:
    
    theParentFrame - parent frame
    
    im - source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - getResultImage
```
public ModelImage getResultImage()
```
    Accessor that returns the image.
    
    Returns:
    
    The result image
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    itemStateChanged - unchanged.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - DOCUMENT ME!
  - setImage25D
```
public void setImage25D(boolean b)
```
    Process the image in 2.5D.
    
    Parameters:
    
    b - whether to do 2.5D morphology
  - setKernelSize
```
public void setKernelSize(float s)
```
    Accessor that sets the kernel size.
    
    Parameters:
    
    s - the desired kernel size
  - setKernelType
```
public void setKernelType(int krnl)
```
    Accessor that sets the kernel type to use.
    
    Parameters:
    
    krnl - the kernel type to use (either AlgorithmMorphology2D.CONNECTED4, AlgorithmMorphology.CONNECTED8, AlgorithmMorphology2D.CONNECTED12, AlgorithmMorphology2D.SIZED_CIRCLE, AlgorithmMorphology3D.CONNECTED6, AlgorithmMorphology3D.CONNECTED26, AlgorithmMorphology3D.CONNECTED24, AlgorithmMorphology3D.SIZED_SPHERE (or the ones in AlgorithmMorphology25D))
  - setNumDilations
```
public void setNumDilations(int n)
```
    Accessor that sets the number of dilations to perform.
    
    Parameters:
    
    n - The number of erosions to do.
  - setNumErosions
```
public void setNumErosions(int n)
```
    Accessor that sets the number of erosions to perform.
    
    Parameters:
    
    n - The number of erosions to do.
  - setMethod
```
public void setMethod(int method)
```
    Parameters:
    
    method -
  - setGeodesicSize
```
public void setGeodesicSize(int geodesicSize)
```
    Parameters:
    
    geodesicSize -
  - buildComboBox
```
private void buildComboBox()
```
    buildComboBox.
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - init
```
private void init()
```
    Sets up the GUI (panels, buttons, etc) and displays it on the screen.
  - buildComboBox
```
private javax.swing.JComboBox buildComboBox(ModelImage image)
```
    Builds a list of images. Returns combobox. List must be all color or all black and white.
    
    Parameters:
    
    image - DOCUMENT ME!
    
    Returns:
    
    Newly created combo box.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.

Class JDialogMorphologicalReconstruction

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Field Detail

comboBoxKernel

do25D

image

image25D

itersD

itersE

kernel

kernelSize

labelKernel

labelKernelSize

labelNIterD

labelNIterE

maskPanel

reconAlgo25D

reconAlgo2D

reconAlgo3D

gsReconAlgo2D

gsReconAlgo25D

gsReconAlgo3D

morphologyGroup

binaryButton

grayScaleButton

algorithmGroup

geodesicDilationButton

geodesicErosionButton

reconstructionByDilationButton

reconstructionByErosionButton

openingByReconstructionButton

closingByReconstructionButton

binaryMorphology

resultImage

textKernelSize

textNIterD

textNIterE

titles

userInterface

outputPanel

markerLabel

maskLabel

imageComboBox

geodesicSizeLabel

geodesicSizeText

geodesicSize

maskImage

method

Constructor Detail

JDialogMorphologicalReconstruction

JDialogMorphologicalReconstruction

Method Detail

actionPerformed

algorithmPerformed

getResultImage