Package gov.nih.mipav.view.dialogs

Class JDialogMorphologicalReconstruction

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      private void buildComboBox()
      buildComboBox.
      private javax.swing.JComboBox buildComboBox​(ModelImage image)
      Builds a list of images.
      protected void callAlgorithm()
      Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
      ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      java.lang.String getOutputImageName​(java.lang.String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      ModelImage getResultImage()
      Accessor that returns the image.
      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.
      boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      void itemStateChanged​(java.awt.event.ItemEvent event)
      itemStateChanged - unchanged.
      void setGeodesicSize​(int geodesicSize)  
      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      void setImage25D​(boolean b)
      Process the image in 2.5D.
      void setKernelSize​(float s)
      Accessor that sets the kernel size.
      void setKernelType​(int krnl)
      Accessor that sets the kernel type to use.
      void setMethod​(int method)  
      void setNumDilations​(int n)
      Accessor that sets the number of dilations to perform.
      void setNumErosions​(int n)
      Accessor that sets the number of erosions to perform.
      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      protected void storeParamsFromGUI()
      Record the parameters just used to run this algorithm in a script.

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • comboBoxKernel

        private javax.swing.JComboBox comboBoxKernel
        DOCUMENT ME!

      • do25D

        private boolean do25D
        DOCUMENT ME!

      • image25D

        private javax.swing.JCheckBox image25D
        DOCUMENT ME!

      • itersD

        private int itersD
        or if the source image is to be replaced.

      • itersE

        private int itersE
        DOCUMENT ME!

      • kernel

        private int kernel
        DOCUMENT ME!

      • kernelSize

        private float kernelSize
        DOCUMENT ME!

      • labelKernel

        private javax.swing.JLabel labelKernel
        DOCUMENT ME!

      • labelKernelSize

        private javax.swing.JLabel labelKernelSize
        DOCUMENT ME!

      • labelNIterD

        private javax.swing.JLabel labelNIterD
        DOCUMENT ME!

      • labelNIterE

        private javax.swing.JLabel labelNIterE
        DOCUMENT ME!

      • maskPanel

        private javax.swing.JPanel maskPanel
        DOCUMENT ME!

      • morphologyGroup

        private javax.swing.ButtonGroup morphologyGroup

      • binaryButton

        private javax.swing.JRadioButton binaryButton

      • grayScaleButton

        private javax.swing.JRadioButton grayScaleButton

      • algorithmGroup

        private javax.swing.ButtonGroup algorithmGroup

      • geodesicDilationButton

        private javax.swing.JRadioButton geodesicDilationButton

      • geodesicErosionButton

        private javax.swing.JRadioButton geodesicErosionButton

      • reconstructionByDilationButton

        private javax.swing.JRadioButton reconstructionByDilationButton

      • reconstructionByErosionButton

        private javax.swing.JRadioButton reconstructionByErosionButton

      • openingByReconstructionButton

        private javax.swing.JRadioButton openingByReconstructionButton

      • closingByReconstructionButton

        private javax.swing.JRadioButton closingByReconstructionButton

      • binaryMorphology

        private boolean binaryMorphology

      • resultImage

        private ModelImage resultImage
        DOCUMENT ME!

      • textKernelSize

        private javax.swing.JTextField textKernelSize
        DOCUMENT ME!

      • textNIterD

        private javax.swing.JTextField textNIterD
        DOCUMENT ME!

      • textNIterE

        private javax.swing.JTextField textNIterE
        DOCUMENT ME!

      • titles

        private java.lang.String[] titles
        DOCUMENT ME!

      • markerLabel

        private javax.swing.JLabel markerLabel

      • maskLabel

        private javax.swing.JLabel maskLabel

      • imageComboBox

        private javax.swing.JComboBox imageComboBox

      • geodesicSizeLabel

        private javax.swing.JLabel geodesicSizeLabel

      • geodesicSizeText

        private javax.swing.JTextField geodesicSizeText

      • geodesicSize

        private int geodesicSize

      • method

        private int method

    • Constructor Detail

      • JDialogMorphologicalReconstruction

        public JDialogMorphologicalReconstruction()
        Empty constructor needed for dynamic instantiation (used during scripting).

      • JDialogMorphologicalReconstruction

        public JDialogMorphologicalReconstruction​(java.awt.Frame theParentFrame,
                                          ModelImage im)
        Constructor.
        Parameters:
        theParentFrame - parent frame
        im - source image

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Closes dialog box when the OK button is pressed and calls the algorithm.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - Event that triggers function

      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.

      • getResultImage

        public ModelImage getResultImage()
        Accessor that returns the image.
        Returns:
        The result image

      • setGUIFromParams

        protected void setGUIFromParams()
        Set the dialog GUI using the script parameters while running this algorithm as part of a script.
        Specified by:
        setGUIFromParams in class JDialogScriptableBase

      • doPostAlgorithmActions

        protected void doPostAlgorithmActions()
        Store the result image in the script runner's image table now that the action execution is finished.
        Overrides:
        doPostAlgorithmActions in class JDialogScriptableBase

      • itemStateChanged

        public void itemStateChanged​(java.awt.event.ItemEvent event)
        itemStateChanged - unchanged.
        Specified by:
        itemStateChanged in interface java.awt.event.ItemListener
        Overrides:
        itemStateChanged in class JDialogBase
        Parameters:
        event - DOCUMENT ME!

      • setImage25D

        public void setImage25D​(boolean b)
        Process the image in 2.5D.
        Parameters:
        b - whether to do 2.5D morphology

      • setKernelSize

        public void setKernelSize​(float s)
        Accessor that sets the kernel size.
        Parameters:
        s - the desired kernel size

      • setKernelType

        public void setKernelType​(int krnl)
        Accessor that sets the kernel type to use.
        Parameters:
        krnl - the kernel type to use (either AlgorithmMorphology2D.CONNECTED4, AlgorithmMorphology.CONNECTED8, AlgorithmMorphology2D.CONNECTED12, AlgorithmMorphology2D.SIZED_CIRCLE, AlgorithmMorphology3D.CONNECTED6, AlgorithmMorphology3D.CONNECTED26, AlgorithmMorphology3D.CONNECTED24, AlgorithmMorphology3D.SIZED_SPHERE (or the ones in AlgorithmMorphology25D))

      • setNumDilations

        public void setNumDilations​(int n)
        Accessor that sets the number of dilations to perform.
        Parameters:
        n - The number of erosions to do.

      • setNumErosions

        public void setNumErosions​(int n)
        Accessor that sets the number of erosions to perform.
        Parameters:
        n - The number of erosions to do.

      • setMethod

        public void setMethod​(int method)
        Parameters:
        method -

      • setGeodesicSize

        public void setGeodesicSize​(int geodesicSize)
        Parameters:
        geodesicSize -

      • buildComboBox

        private void buildComboBox()
        buildComboBox.

      • callAlgorithm

        protected void callAlgorithm()
        Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
        Specified by:
        callAlgorithm in class JDialogScriptableBase

      • init

        private void init()
        Sets up the GUI (panels, buttons, etc) and displays it on the screen.

      • buildComboBox

        private javax.swing.JComboBox buildComboBox​(ModelImage image)
        Builds a list of images. Returns combobox. List must be all color or all black and white.
        Parameters:
        image - DOCUMENT ME!
        Returns:
        Newly created combo box.

      • setVariables

        private boolean setVariables()
        Use the GUI results to set up the variables needed to run the algorithm.
        Returns:
        true if parameters set successfully, false otherwise.

      • getActionMetadata

        public ActionMetadata getActionMetadata()
        Return meta-information about this discoverable action for categorization and labeling purposes.
        Specified by:
        getActionMetadata in interface ActionDiscovery
        Returns:
        Metadata for this action.

      • createInputParameters

        public ParameterTable createInputParameters()
        Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
        Specified by:
        createInputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the inputs of this algorithm.

      • createOutputParameters

        public ParameterTable createOutputParameters()
        Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
        Specified by:
        createOutputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the outputs of this algorithm.

      • getOutputImageName

        public java.lang.String getOutputImageName​(java.lang.String imageParamName)
        Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
        Specified by:
        getOutputImageName in interface ActionDiscovery
        Parameters:
        imageParamName - The output image parameter label for which to get the image name.
        Returns:
        The image name of the requested output image parameter label.

      • isActionComplete

        public boolean isActionComplete()
        Returns whether the action has successfully completed its execution.
        Specified by:
        isActionComplete in interface ActionDiscovery
        Returns:
        True, if the action is complete. False, if the action failed or is still running.