Package gov.nih.mipav.view.renderer.WildMagic.AAM

Class CAAMAnalyzeSynthesize

  • Direct Known Subclasses:
    CAAMAnalyzeSynthesizeSoftware
    public abstract class CAAMAnalyzeSynthesize
extends java.lang.Object
    This is the Java modified version of C++ active appearance model API (AAM_API). It is modified with a subset of required functions for automatic MRI prostate segmentation. AAM-API LICENSE - file: license.txt This software is freely available for non-commercial use such as research and education. Please see the full disclaimer below. All publications describing work using this software should cite the reference given below. Copyright (c) 2000-2003 Mikkel B. Stegmann, mbs@imm.dtu.dk IMM, Informatics & Mathematical Modelling DTU, Technical University of Denmark Richard Petersens Plads, Building 321 DK-2800 Lyngby, Denmark http://www.imm.dtu.dk/~aam/ REFERENCES Please use the reference below, when writing articles, reports etc. where the AAM-API has been used. A draft version the article is available from the homepage. I will be happy to receive pre- or reprints of such articles. /Mikkel ------------- M. B. Stegmann, B. K. Ersboll, R. Larsen, "FAME -- A Flexible Appearance Modelling Environment", IEEE Transactions on Medical Imaging, IEEE, 2003 (to appear) ------------- 3RD PART SOFTWARE The software is partly based on the following libraries: - The Microsoft(tm) Vision Software Developers Kit, VisSDK - LAPACK DISCLAIMER This software is provided 'as-is', without any express or implied warranty. In no event will the author be held liable for any damages arising from the use of this software. Permission is granted to anyone to use this software for any non-commercial purpose, and to alter it, subject to the following restrictions: 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. -- No guarantees of performance accompany this software, nor is any responsibility assumed on the part of the author or IMM. This software is provided by Mikkel B. Stegmann and IMM ``as is'' and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall IMM or Mikkel B. Stegmann be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage. $Revision: 1.4 $ $Date: 2003/04/23 14:49:15 $ Abstract base class for the analyze/synthesize classes. To core task of such classes is to sample pixels inside a shape placed on an image (the analyze part) and render a texture vector into a shape given in image coordinates (the synthesize part).
    Author:
    Ruida Cheng

    • Field Detail

      • asSoftware

        public static int asSoftware
        software synthesize

      • asOpenGL

        public static int asOpenGL
        hardware OpenGL synthesize, currently disabled.

      • m_Id

        protected int m_Id
        Synthesize ID

    • Constructor Detail

      • CAAMAnalyzeSynthesize

        public CAAMAnalyzeSynthesize​(CAAMReferenceFrame rf)
        Constructor
        Parameters:
        rf - The reference frame to analyze and synthesize

    • Method Detail

      • FromFile

        public void FromFile​(java.io.DataInputStream fh,
                     int _id)
        Reads an object from disk. Deprecated.
        Parameters:
        fh - input stream
        _id - file id

      • ToFile

        public void ToFile​(java.io.DataOutputStream fh)
        Write an object to disk.
        Parameters:
        fh - output stream

      • AAMLoadAnalyzerSynthesizer

        public static CAAMAnalyzeSynthesize AAMLoadAnalyzerSynthesizer​(java.io.DataInputStream fh,
                                                               CAAMReferenceFrame rf)
        Analyzer/Synthesizer loader. The function loads an Analyzer/Synthesizer from a stream, instantiates the correct concrete class and returns a base class pointer.
        Parameters:
        fh - input stream from disk
        rf - reference frame
        Returns:
        An instance of Analyzer/Synthesize object created on the heap

      • dispose

        public abstract void dispose()
        Dispose memory

      • SetAnalyzeImage

        public abstract void SetAnalyzeImage​(ModelSimpleImage img)
        Set the analyzed image
        Parameters:
        img - MIPAV simple image as the pass in type

      • Analyze

        public abstract boolean Analyze​(CAAMShape shape,
                                CDVector texture,
                                boolean useInterpolation)
        Analyze image
        Parameters:
        shape - AAM shape, VOI shape
        texture - image texture
        useInterpolation - interpolation type
        Returns:
        success or not

      • Analyze

        public abstract boolean Analyze​(CAAMShape shape,
                                ModelSimpleImage refImg,
                                boolean useInterpolation)
        Analyze image.
        Parameters:
        shape - VOI shape converted to AAM shape
        refImg - image reference, MIPAV simple image type
        useInterpolation - interpolation type
        Returns:
        success or not

      • Synthesize

        public abstract boolean Synthesize​(CAAMShape shape,
                                   CDVector texture,
                                   ModelSimpleImage destImage,
                                   boolean renderOntoImage)
        Image synthesize.
        Parameters:
        shape - VOI shape
        texture - image texture
        destImage - target image
        renderOntoImage - intermediate image
        Returns:
        success or not