Package gov.nih.mipav.model.file

Class FileInfoCZI

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable
    public class FileInfoCZI
extends FileInfoBase
    File info storage container.
    See Also:
    Serialized Form

    • Field Detail

      • focusPosition

        private java.lang.String focusPosition

      • acquisitionTime

        private java.lang.String acquisitionTime

      • stageXPosition

        private java.lang.String stageXPosition

      • stageYPosition

        private java.lang.String stageYPosition

      • validBitsPerPixel

        private java.lang.String validBitsPerPixel

      • timeStamps

        private double[] timeStamps

      • imageName

        private java.lang.String imageName

      • author

        private java.lang.String author

      • userName

        private java.lang.String userName

      • subType

        private java.lang.String subType

      • title

        private java.lang.String title

      • creationDate

        private java.lang.String creationDate

      • description

        private java.lang.String description

      • thumbnail

        private java.lang.String thumbnail

      • comment

        private java.lang.String comment

      • rating

        private java.lang.String rating

      • keywords

        private java.lang.String keywords

      • ID

        private java.lang.String ID

      • displayName

        private java.lang.String displayName

      • firstName

        private java.lang.String firstName

      • middleName

        private java.lang.String middleName

      • lastName

        private java.lang.String lastName

      • email

        private java.lang.String email

      • institution

        private java.lang.String institution

      • experimenterName

        private java.lang.String experimenterName

      • phone

        private java.lang.String phone

      • fax

        private java.lang.String fax

      • address

        private java.lang.String address

      • city

        private java.lang.String city

      • country

        private java.lang.String country

      • state

        private java.lang.String state

      • dimH

        private int dimH

      • dimR

        private int dimR

      • dimS

        private int dimS

      • dimI

        private int dimI

      • dimM

        private int dimM

      • dimB

        private int dimB

      • dimV

        private int dimV

      • originalScanData

        private java.lang.String originalScanData

      • channelsFound

        private int channelsFound

      • channelID

        private java.lang.String[] channelID

      • channelName

        private java.lang.String[] channelName

      • acquisitionMode

        private java.lang.String[] acquisitionMode

      • illuminationType

        private java.lang.String[] illuminationType

      • contrastMethod

        private java.lang.String[] contrastMethod

      • illuminationWavelength

        private java.lang.String[] illuminationWavelength

      • detectionWavelength

        private java.lang.String[] detectionWavelength

      • excitationWavelength

        private java.lang.String[] excitationWavelength

      • emissionWavelength

        private java.lang.String[] emissionWavelength

      • dyeID

        private java.lang.String[] dyeID

      • dyeDatabaseID

        private java.lang.String[] dyeDatabaseID

      • pinholeSize

        private java.lang.String[] pinholeSize

      • pinholeSizeAiry

        private java.lang.String[] pinholeSizeAiry

      • pinholeGeometry

        private java.lang.String[] pinholeGeometry

      • fluor

        private java.lang.String[] fluor

      • NDFilter

        private java.lang.String[] NDFilter

      • pockelCellSetting

        private java.lang.String[] pockelCellSetting

      • color

        private java.lang.String[] color

      • exposureTime

        private java.lang.String[] exposureTime

      • sectionThickness

        private java.lang.String[] sectionThickness

      • reflector

        private java.lang.String[] reflector

      • condenserContrast

        private java.lang.String[] condenserContrast

      • NACondenser

        private java.lang.String[] NACondenser

      • ratio

        private java.lang.String[] ratio

      • detectorBinning

        private java.lang.String[] detectorBinning

      • detectorGain

        private java.lang.String[] detectorGain

      • detectorDigitalGain

        private java.lang.String[] detectorDigitalGain

      • detectorOffset

        private java.lang.String[] detectorOffset

      • detectorEMGain

        private java.lang.String[] detectorEMGain

      • detectorVoltage

        private java.lang.String[] detectorVoltage

      • detectorReadOutRate

        private java.lang.String[] detectorReadOutRate

      • detectorUseBrightnessContrastCorrection

        private java.lang.String[] detectorUseBrightnessContrastCorrection

      • lightSourceWavelength

        private java.lang.String[] lightSourceWavelength

      • lightSourceAttenuation

        private java.lang.String[] lightSourceAttenuation

      • lightSourceIntensity

        private java.lang.String[] lightSourceIntensity

      • low

        private java.lang.String[] low

      • high

        private java.lang.String[] high

      • gamma

        private java.lang.String[] gamma

      • mode

        private java.lang.String[] mode

      • points

        private java.lang.String[] points

      • channelDescription

        private java.lang.String[] channelDescription

      • channelWeight

        private java.lang.String[] channelWeight

      • microscopeSystem

        private java.lang.String microscopeSystem

      • microscopeType

        private java.lang.String microscopeType

    • Constructor Detail

      • FileInfoCZI

        public FileInfoCZI​(java.lang.String name,
                   java.lang.String directory,
                   int format)
        File info storage constructor.
        Parameters:
        name - file name
        directory - directory
        format - file format

    • Method Detail

      • displayAboutInfo

        public void displayAboutInfo​(JDialogBase dlog,
                             TransMatrix matrix)
        Displays the file information.
        Specified by:
        displayAboutInfo in class FileInfoBase
        Parameters:
        dlog - dialog box that is written to
        matrix - transformation matrix

      • setFocusPosition

        public void setFocusPosition​(java.lang.String focusPosition)
        Parameters:
        focusPosition -

      • setAcquisitionTime

        public void setAcquisitionTime​(java.lang.String acquisitionTime)
        Parameters:
        acquisitionTime -

      • setStageXPosition

        public void setStageXPosition​(java.lang.String stageXPosition)
        Parameters:
        stageXPosition -

      • setStageYPosition

        public void setStageYPosition​(java.lang.String stageYPosition)
        Parameters:
        stageYPosition -

      • setValidBitsPerPixel

        public void setValidBitsPerPixel​(java.lang.String validBitsPerPixel)
        Parameters:
        validBitsPerPixel -

      • setTimeStamps

        public void setTimeStamps​(double[] timeStamps)
        Parameters:
        timeStamps -

      • setImageName

        public void setImageName​(java.lang.String imageName)
        Parameters:
        imageName -

      • setAuthor

        public void setAuthor​(java.lang.String author)
        Parameters:
        author -

      • setUserName

        public void setUserName​(java.lang.String userName)
        Parameters:
        userName -

      • setSubType

        public void setSubType​(java.lang.String subType)
        Parameters:
        subType -

      • setTitle

        public void setTitle​(java.lang.String title)
        Parameters:
        title -

      • setCreationDate

        public void setCreationDate​(java.lang.String creationDate)
        Parameters:
        creationDate -

      • setDescription

        public void setDescription​(java.lang.String description)
        Parameters:
        description -

      • setThumbnail

        public void setThumbnail​(java.lang.String thumbnail)
        Parameters:
        thumbnail -

      • setComment

        public void setComment​(java.lang.String comment)
        Parameters:
        comment -

      • setRating

        public void setRating​(java.lang.String rating)
        Parameters:
        rating -

      • setKeywords

        public void setKeywords​(java.lang.String keywords)
        Parameters:
        keywords -

      • setID

        public void setID​(java.lang.String ID)
        Parameters:
        ID -

      • setDisplayName

        public void setDisplayName​(java.lang.String displayName)
        Parameters:
        displayName -

      • setFirstName

        public void setFirstName​(java.lang.String firstName)
        Parameters:
        firstName -

      • setMiddleName

        public void setMiddleName​(java.lang.String middleName)
        Parameters:
        middleName -

      • setLastName

        public void setLastName​(java.lang.String lastName)
        Parameters:
        lastName -

      • setEmail

        public void setEmail​(java.lang.String email)
        Parameters:
        email -

      • setInstitution

        public void setInstitution​(java.lang.String institution)
        Parameters:
        institution -

      • setExperimenterName

        public void setExperimenterName​(java.lang.String experimenterName)
        Parameters:
        experimenterName -

      • setPhone

        public void setPhone​(java.lang.String phone)
        Parameters:
        phone -

      • setFax

        public void setFax​(java.lang.String fax)
        Parameters:
        fax -

      • setAddress

        public void setAddress​(java.lang.String address)
        Parameters:
        address -

      • setCity

        public void setCity​(java.lang.String city)
        Parameters:
        city -

      • setState

        public void setState​(java.lang.String state)
        Parameters:
        state -

      • setCountry

        public void setCountry​(java.lang.String country)
        Parameters:
        country -

      • setDimH

        public void setDimH​(int dimH)
        Parameters:
        dimH -

      • setDimR

        public void setDimR​(int dimR)
        Parameters:
        dimR -

      • setDimS

        public void setDimS​(int dimS)
        Parameters:
        dimS -

      • setDimI

        public void setDimI​(int dimI)
        Parameters:
        dimI -

      • setDimM

        public void setDimM​(int dimM)
        Parameters:
        dimM -

      • setDimB

        public void setDimB​(int dimB)
        Parameters:
        dimB -

      • setDimV

        public void setDimV​(int dimV)
        Parameters:
        dimV -

      • setOriginalScanData

        public void setOriginalScanData​(java.lang.String originalScanData)
        Parameters:
        originalScanData -

      • setChannelsFound

        public void setChannelsFound​(int channelsFound)
        Parameters:
        channelsFound -

      • setChannelID

        public void setChannelID​(java.lang.String[] channelID)
        Parameters:
        channelID -

      • getChannelID

        public java.lang.String[] getChannelID()
        Returns:

      • setChannelName

        public void setChannelName​(java.lang.String[] channelName)
        Parameters:
        channelName -

      • setAcquisitionMode

        public void setAcquisitionMode​(java.lang.String[] acquisitionMode)
        Parameters:
        acquisitionMode -

      • setIlluminationType

        public void setIlluminationType​(java.lang.String[] illuminationType)
        Parameters:
        illuminationType -

      • setContrastMethod

        public void setContrastMethod​(java.lang.String[] contrastMethod)
        Parameters:
        contrastMethod -

      • setIlluminationWavelength

        public void setIlluminationWavelength​(java.lang.String[] illuminationWavelength)
        Parameters:
        illuminationWavelength -

      • setDetectionWavelength

        public void setDetectionWavelength​(java.lang.String[] detectionWavelength)
        Parameters:
        detectionWavelength -

      • setExcitationWavelength

        public void setExcitationWavelength​(java.lang.String[] excitationWavelength)
        Parameters:
        excitationWavelength -

      • setEmissionWavelength

        public void setEmissionWavelength​(java.lang.String[] emissionWavelength)
        Parameters:
        emissionWavelength -

      • setDyeID

        public void setDyeID​(java.lang.String[] dyeID)
        Parameters:
        dyeID -

      • setDyeDatabaseID

        public void setDyeDatabaseID​(java.lang.String[] dyeDatabaseID)
        Parameters:
        dyeDatabaseID -

      • setPinholeSize

        public void setPinholeSize​(java.lang.String[] pinholeSize)
        Parameters:
        pinholeSize -

      • setPinholeSizeAiry

        public void setPinholeSizeAiry​(java.lang.String[] pinholeSizeAiry)
        Parameters:
        pinholeSizeAiry -

      • setPinholeGeometry

        public void setPinholeGeometry​(java.lang.String[] pinholeGeometry)
        Parameters:
        pinholeGeometry -

      • setFluor

        public void setFluor​(java.lang.String[] fluor)
        Parameters:
        fluor -

      • setNDFilter

        public void setNDFilter​(java.lang.String[] NDFilter)
        Parameters:
        NDFilter -

      • setPockelCellSetting

        public void setPockelCellSetting​(java.lang.String[] pockelCellSetting)
        Parameters:
        pockelCellSetting -

      • setColor

        public void setColor​(java.lang.String[] color)
        Parameters:
        color -

      • setExposureTime

        public void setExposureTime​(java.lang.String[] exposureTime)
        Parameters:
        exposureTime -

      • setSectionThickness

        public void setSectionThickness​(java.lang.String[] sectionThickness)
        Parameters:
        sectionThickness -

      • setReflector

        public void setReflector​(java.lang.String[] reflector)
        Parameters:
        reflector -

      • setCondenserContrast

        public void setCondenserContrast​(java.lang.String[] condenserContrast)
        Parameters:
        condenserContrast -

      • setNACondenser

        public void setNACondenser​(java.lang.String[] NACondenser)
        Parameters:
        NACondenser -

      • setRatio

        public void setRatio​(java.lang.String[] ratio)
        Parameters:
        ratio -

      • setDetectorBinning

        public void setDetectorBinning​(java.lang.String[] detectorBinning)
        Parameters:
        detectorBinning -

      • setDetectorGain

        public void setDetectorGain​(java.lang.String[] detectorGain)
        Parameters:
        detectorGain -

      • setDetectorDigitalGain

        public void setDetectorDigitalGain​(java.lang.String[] detectorDigitalGain)
        Parameters:
        detectorDigitalGain -

      • setDetectorOffset

        public void setDetectorOffset​(java.lang.String[] detectorOffset)
        Parameters:
        detectorOffset -

      • setDetectorEMGain

        public void setDetectorEMGain​(java.lang.String[] detectorEMGain)
        Parameters:
        detectorEMGain -

      • setDetectorVoltage

        public void setDetectorVoltage​(java.lang.String[] detectorVoltage)
        Parameters:
        detectorVoltage -

      • setDetectorReadOutRate

        public void setDetectorReadOutRate​(java.lang.String[] detectorReadOutRate)
        Parameters:
        detectorReadOutRate -

      • setDetectorUseBrightnessContrastCorrection

        public void setDetectorUseBrightnessContrastCorrection​(java.lang.String[] detectorUseBrightnessContrastCorrection)
        Parameters:
        detectorUseBrightnessContrastCorrection -

      • setLightSourceWavelength

        public void setLightSourceWavelength​(java.lang.String[] lightSourceWavelength)
        Parameters:
        lightSourceWavelength -

      • setLightSourceAttenuation

        public void setLightSourceAttenuation​(java.lang.String[] lightSourceAttenuation)
        Parameters:
        lightSourceAttenuation -

      • setLightSourceIntensity

        public void setLightSourceIntensity​(java.lang.String[] lightSourceIntensity)
        Parameters:
        lightSourceIntensity -

      • setLow

        public void setLow​(java.lang.String[] low)
        Parameters:
        low -

      • setHigh

        public void setHigh​(java.lang.String[] high)
        Parameters:
        high -

      • setGamma

        public void setGamma​(java.lang.String[] gamma)
        Parameters:
        gamma -

      • setMode

        public void setMode​(java.lang.String[] mode)
        Parameters:
        mode -

      • setPoints

        public void setPoints​(java.lang.String[] points)
        Parameters:
        points -

      • setChannelDescription

        public void setChannelDescription​(java.lang.String[] channelDescription)
        Parameters:
        channelDescription -

      • setChannelWeight

        public void setChannelWeight​(java.lang.String[] channelWeight)
        Parameters:
        channelWeight -

      • setMicroscopeSystem

        public void setMicroscopeSystem​(java.lang.String microscopeSystem)
        Parameters:
        microscopeSystem -

      • setMicroscopeType

        public void setMicroscopeType​(java.lang.String microscopeType)
        Parameters:
        microscopeType -