Package gov.nih.mipav.model.file

Class FileInfoCZI

java.lang.Object
gov.nih.mipav.model.structures.ModelSerialCloneable
gov.nih.mipav.model.file.FileInfoBase
gov.nih.mipav.model.file.FileInfoCZI
All Implemented Interfaces:
Serializable, Cloneable
public class FileInfoCZI extends FileInfoBase
File info storage container.
See Also:

  • Field Details

    • focusPosition

      private String focusPosition

    • acquisitionTime

      private String acquisitionTime

    • stageXPosition

      private String stageXPosition

    • stageYPosition

      private String stageYPosition

    • validBitsPerPixel

      private String validBitsPerPixel

    • timeStamps

      private double[] timeStamps

    • imageName

      private String imageName

    • author

      private String author

    • userName

      private String userName

    • subType

      private String subType

    • title

      private String title

    • creationDate

      private String creationDate

    • description

      private String description

    • thumbnail

      private String thumbnail

    • comment

      private String comment

    • rating

      private String rating

    • keywords

      private String keywords

    • ID

      private String ID

    • displayName

      private String displayName

    • firstName

      private String firstName

    • middleName

      private String middleName

    • lastName

      private String lastName

    • email

      private String email

    • institution

      private String institution

    • experimenterName

      private String experimenterName

    • phone

      private String phone

    • fax

      private String fax

    • address

      private String address

    • city

      private String city

    • country

      private String country

    • state

      private String state

    • dimH

      private int dimH

    • dimR

      private int dimR

    • dimS

      private int dimS

    • dimI

      private int dimI

    • dimM

      private int dimM

    • dimB

      private int dimB

    • dimV

      private int dimV

    • originalScanData

      private String originalScanData

    • channelsFound

      private int channelsFound

    • channelID

      private String[] channelID

    • channelName

      private String[] channelName

    • acquisitionMode

      private String[] acquisitionMode

    • illuminationType

      private String[] illuminationType

    • contrastMethod

      private String[] contrastMethod

    • illuminationWavelength

      private String[] illuminationWavelength

    • detectionWavelength

      private String[] detectionWavelength

    • excitationWavelength

      private String[] excitationWavelength

    • emissionWavelength

      private String[] emissionWavelength

    • dyeID

      private String[] dyeID

    • dyeDatabaseID

      private String[] dyeDatabaseID

    • pinholeSize

      private String[] pinholeSize

    • pinholeSizeAiry

      private String[] pinholeSizeAiry

    • pinholeGeometry

      private String[] pinholeGeometry

    • fluor

      private String[] fluor

    • NDFilter

      private String[] NDFilter

    • pockelCellSetting

      private String[] pockelCellSetting

    • color

      private String[] color

    • exposureTime

      private String[] exposureTime

    • sectionThickness

      private String[] sectionThickness

    • reflector

      private String[] reflector

    • condenserContrast

      private String[] condenserContrast

    • NACondenser

      private String[] NACondenser

    • ratio

      private String[] ratio

    • detectorBinning

      private String[] detectorBinning

    • detectorGain

      private String[] detectorGain

    • detectorDigitalGain

      private String[] detectorDigitalGain

    • detectorOffset

      private String[] detectorOffset

    • detectorEMGain

      private String[] detectorEMGain

    • detectorVoltage

      private String[] detectorVoltage

    • detectorReadOutRate

      private String[] detectorReadOutRate

    • detectorUseBrightnessContrastCorrection

      private String[] detectorUseBrightnessContrastCorrection

    • lightSourceWavelength

      private String[] lightSourceWavelength

    • lightSourceAttenuation

      private String[] lightSourceAttenuation

    • lightSourceIntensity

      private String[] lightSourceIntensity

    • low

      private String[] low

    • high

      private String[] high

    • gamma

      private String[] gamma

    • mode

      private String[] mode

    • points

      private String[] points

    • channelDescription

      private String[] channelDescription

    • channelWeight

      private String[] channelWeight

    • microscopeSystem

      private String microscopeSystem

    • microscopeType

      private String microscopeType

  • Constructor Details

    • FileInfoCZI

      public FileInfoCZI(String name, String directory, int format)
      File info storage constructor.
      Parameters:
      name - file name
      directory - directory
      format - file format

  • Method Details

    • displayAboutInfo

      public void displayAboutInfo(JDialogBase dlog, TransMatrix matrix)
      Displays the file information.
      Specified by:
      displayAboutInfo in class FileInfoBase
      Parameters:
      dlog - dialog box that is written to
      matrix - transformation matrix

    • setFocusPosition

      public void setFocusPosition(String focusPosition)
      Parameters:
      focusPosition -

    • setAcquisitionTime

      public void setAcquisitionTime(String acquisitionTime)
      Parameters:
      acquisitionTime -

    • setStageXPosition

      public void setStageXPosition(String stageXPosition)
      Parameters:
      stageXPosition -

    • setStageYPosition

      public void setStageYPosition(String stageYPosition)
      Parameters:
      stageYPosition -

    • setValidBitsPerPixel

      public void setValidBitsPerPixel(String validBitsPerPixel)
      Parameters:
      validBitsPerPixel -

    • setTimeStamps

      public void setTimeStamps(double[] timeStamps)
      Parameters:
      timeStamps -

    • setImageName

      public void setImageName(String imageName)
      Parameters:
      imageName -

    • setAuthor

      public void setAuthor(String author)
      Parameters:
      author -

    • setUserName

      public void setUserName(String userName)
      Parameters:
      userName -

    • setSubType

      public void setSubType(String subType)
      Parameters:
      subType -

    • setTitle

      public void setTitle(String title)
      Parameters:
      title -

    • setCreationDate

      public void setCreationDate(String creationDate)
      Parameters:
      creationDate -

    • setDescription

      public void setDescription(String description)
      Parameters:
      description -

    • setThumbnail

      public void setThumbnail(String thumbnail)
      Parameters:
      thumbnail -

    • setComment

      public void setComment(String comment)
      Parameters:
      comment -

    • setRating

      public void setRating(String rating)
      Parameters:
      rating -

    • setKeywords

      public void setKeywords(String keywords)
      Parameters:
      keywords -

    • setID

      public void setID(String ID)
      Parameters:
      ID -

    • setDisplayName

      public void setDisplayName(String displayName)
      Parameters:
      displayName -

    • setFirstName

      public void setFirstName(String firstName)
      Parameters:
      firstName -

    • setMiddleName

      public void setMiddleName(String middleName)
      Parameters:
      middleName -

    • setLastName

      public void setLastName(String lastName)
      Parameters:
      lastName -

    • setEmail

      public void setEmail(String email)
      Parameters:
      email -

    • setInstitution

      public void setInstitution(String institution)
      Parameters:
      institution -

    • setExperimenterName

      public void setExperimenterName(String experimenterName)
      Parameters:
      experimenterName -

    • setPhone

      public void setPhone(String phone)
      Parameters:
      phone -

    • setFax

      public void setFax(String fax)
      Parameters:
      fax -

    • setAddress

      public void setAddress(String address)
      Parameters:
      address -

    • setCity

      public void setCity(String city)
      Parameters:
      city -

    • setState

      public void setState(String state)
      Parameters:
      state -

    • setCountry

      public void setCountry(String country)
      Parameters:
      country -

    • setDimH

      public void setDimH(int dimH)
      Parameters:
      dimH -

    • setDimR

      public void setDimR(int dimR)
      Parameters:
      dimR -

    • setDimS

      public void setDimS(int dimS)
      Parameters:
      dimS -

    • setDimI

      public void setDimI(int dimI)
      Parameters:
      dimI -

    • setDimM

      public void setDimM(int dimM)
      Parameters:
      dimM -

    • setDimB

      public void setDimB(int dimB)
      Parameters:
      dimB -

    • setDimV

      public void setDimV(int dimV)
      Parameters:
      dimV -

    • setOriginalScanData

      public void setOriginalScanData(String originalScanData)
      Parameters:
      originalScanData -

    • setChannelsFound

      public void setChannelsFound(int channelsFound)
      Parameters:
      channelsFound -

    • setChannelID

      public void setChannelID(String[] channelID)
      Parameters:
      channelID -

    • getChannelID

      public String[] getChannelID()
      Returns:

    • setChannelName

      public void setChannelName(String[] channelName)
      Parameters:
      channelName -

    • setAcquisitionMode

      public void setAcquisitionMode(String[] acquisitionMode)
      Parameters:
      acquisitionMode -

    • setIlluminationType

      public void setIlluminationType(String[] illuminationType)
      Parameters:
      illuminationType -

    • setContrastMethod

      public void setContrastMethod(String[] contrastMethod)
      Parameters:
      contrastMethod -

    • setIlluminationWavelength

      public void setIlluminationWavelength(String[] illuminationWavelength)
      Parameters:
      illuminationWavelength -

    • setDetectionWavelength

      public void setDetectionWavelength(String[] detectionWavelength)
      Parameters:
      detectionWavelength -

    • setExcitationWavelength

      public void setExcitationWavelength(String[] excitationWavelength)
      Parameters:
      excitationWavelength -

    • setEmissionWavelength

      public void setEmissionWavelength(String[] emissionWavelength)
      Parameters:
      emissionWavelength -

    • setDyeID

      public void setDyeID(String[] dyeID)
      Parameters:
      dyeID -

    • setDyeDatabaseID

      public void setDyeDatabaseID(String[] dyeDatabaseID)
      Parameters:
      dyeDatabaseID -

    • setPinholeSize

      public void setPinholeSize(String[] pinholeSize)
      Parameters:
      pinholeSize -

    • setPinholeSizeAiry

      public void setPinholeSizeAiry(String[] pinholeSizeAiry)
      Parameters:
      pinholeSizeAiry -

    • setPinholeGeometry

      public void setPinholeGeometry(String[] pinholeGeometry)
      Parameters:
      pinholeGeometry -

    • setFluor

      public void setFluor(String[] fluor)
      Parameters:
      fluor -

    • setNDFilter

      public void setNDFilter(String[] NDFilter)
      Parameters:
      NDFilter -

    • setPockelCellSetting

      public void setPockelCellSetting(String[] pockelCellSetting)
      Parameters:
      pockelCellSetting -

    • setColor

      public void setColor(String[] color)
      Parameters:
      color -

    • setExposureTime

      public void setExposureTime(String[] exposureTime)
      Parameters:
      exposureTime -

    • setSectionThickness

      public void setSectionThickness(String[] sectionThickness)
      Parameters:
      sectionThickness -

    • setReflector

      public void setReflector(String[] reflector)
      Parameters:
      reflector -

    • setCondenserContrast

      public void setCondenserContrast(String[] condenserContrast)
      Parameters:
      condenserContrast -

    • setNACondenser

      public void setNACondenser(String[] NACondenser)
      Parameters:
      NACondenser -

    • setRatio

      public void setRatio(String[] ratio)
      Parameters:
      ratio -

    • setDetectorBinning

      public void setDetectorBinning(String[] detectorBinning)
      Parameters:
      detectorBinning -

    • setDetectorGain

      public void setDetectorGain(String[] detectorGain)
      Parameters:
      detectorGain -

    • setDetectorDigitalGain

      public void setDetectorDigitalGain(String[] detectorDigitalGain)
      Parameters:
      detectorDigitalGain -

    • setDetectorOffset

      public void setDetectorOffset(String[] detectorOffset)
      Parameters:
      detectorOffset -

    • setDetectorEMGain

      public void setDetectorEMGain(String[] detectorEMGain)
      Parameters:
      detectorEMGain -

    • setDetectorVoltage

      public void setDetectorVoltage(String[] detectorVoltage)
      Parameters:
      detectorVoltage -

    • setDetectorReadOutRate

      public void setDetectorReadOutRate(String[] detectorReadOutRate)
      Parameters:
      detectorReadOutRate -

    • setDetectorUseBrightnessContrastCorrection

      public void setDetectorUseBrightnessContrastCorrection(String[] detectorUseBrightnessContrastCorrection)
      Parameters:
      detectorUseBrightnessContrastCorrection -

    • setLightSourceWavelength

      public void setLightSourceWavelength(String[] lightSourceWavelength)
      Parameters:
      lightSourceWavelength -

    • setLightSourceAttenuation

      public void setLightSourceAttenuation(String[] lightSourceAttenuation)
      Parameters:
      lightSourceAttenuation -

    • setLightSourceIntensity

      public void setLightSourceIntensity(String[] lightSourceIntensity)
      Parameters:
      lightSourceIntensity -

    • setLow

      public void setLow(String[] low)
      Parameters:
      low -

    • setHigh

      public void setHigh(String[] high)
      Parameters:
      high -

    • setGamma

      public void setGamma(String[] gamma)
      Parameters:
      gamma -

    • setMode

      public void setMode(String[] mode)
      Parameters:
      mode -

    • setPoints

      public void setPoints(String[] points)
      Parameters:
      points -

    • setChannelDescription

      public void setChannelDescription(String[] channelDescription)
      Parameters:
      channelDescription -

    • setChannelWeight

      public void setChannelWeight(String[] channelWeight)
      Parameters:
      channelWeight -

    • setMicroscopeSystem

      public void setMicroscopeSystem(String microscopeSystem)
      Parameters:
      microscopeSystem -

    • setMicroscopeType

      public void setMicroscopeType(String microscopeType)
      Parameters:
      microscopeType -