java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.file.FileInfoBase
  - - gov.nih.mipav.model.file.FileInfoTrackVis

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class FileInfoTrackVis
extends FileInfoBase
```
See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase
  FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`hdrSize`	Size of header, should be 1000
`private java.lang.String`	`invertXStr`	Internal trakcVis use
`private java.lang.String`	`invertYStr`	Internal trakcVis use
`private java.lang.String`	`invertZStr`	Internal trakcVis use
`private int`	`numProp`	Number of scalars per track point and number of properties per track
`private int`	`numScalar`	Number of scalars per track point and number of properties per track
`private int`	`numTracks`	Number of tracts
`private java.lang.String`	`pad1`	Paddings
`private java.lang.String`	`pad2`	Paddings
`private float[][]`	`properties`	Properties per track
`private java.lang.String[]`	`propNames`	Scalar names and property names
`private java.lang.String`	`reserved`	Reserved for future TrackVis use
`private java.lang.String[]`	`scalarNames`	Scalar names and property names
`private java.lang.String`	`swapXY`	Internal TrackVis use
`private java.lang.String`	`swapXZ`	Internal TrackVis use
`private java.lang.String`	`swapYZ`	Internal TrackVis use
`private int`	`version`	Version number, current is 2
`private java.lang.String`	`voxelOrder`	Storing order of image data

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase
ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors
Constructor Description

FileInfoTrackVis(java.lang.String name, java.lang.String directory, int format)
File info storage constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`displayAboutInfo(JDialogBase dLog, TransMatrix matrix)`	Displays the file information.
`int`	`getHdrSize()`
`java.lang.String`	`getInvertXStr()`
`java.lang.String`	`getInvertYStr()`
`java.lang.String`	`getInvertZStr()`
`int`	`getNumProp()`
`int`	`getNumScalar()`
`int`	`getNumTracts()`
`java.lang.String`	`getPad1()`
`java.lang.String`	`getPad2()`
`float[][]`	`getProperties()`
`java.lang.String[]`	`getPropNames()`
`java.lang.String`	`getReserved()`
`java.lang.String[]`	`getScalarNames()`
`java.lang.String`	`getSwapXY()`
`java.lang.String`	`getSwapXZ()`
`java.lang.String`	`getSwapYZ()`
`float[]`	`getTrackProperties(int i)`
`int`	`getVersion()`
`java.lang.String`	`getVoxelOrder()`
`void`	`setHdrSize(int hdrSize)`
`void`	`setInvertXStr(java.lang.String invertXStr)`
`void`	`setInvertYStr(java.lang.String invertYStr)`
`void`	`setInvertZStr(java.lang.String invertZStr)`
`void`	`setNumProp(int numProp)`
`void`	`setNumScalar(int numScalar)`
`void`	`setNumTracks(int numTracks)`
`void`	`setPad1(java.lang.String pad1)`
`void`	`setPad2(java.lang.String pad2)`
`void`	`setProperties(float[][] properties)`
`void`	`setPropNames(java.lang.String[] propNames)`
`void`	`setReserved(java.lang.String reserved)`
`void`	`setScalarNames(java.lang.String[] scalarNames)`
`void`	`setSwapXY(java.lang.String swapXY)`
`void`	`setSwapYZ(java.lang.String swapYZ)`
`void`	`setSwapZX(java.lang.String swapXZ)`
`void`	`setVersion(int version)`
`void`	`setVoxelOrder(java.lang.String voxelOrder)`

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase
copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
clone, nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail
- numScalar
```
private int numScalar
```
  Number of scalars per track point and number of properties per track
- numProp
```
private int numProp
```
  Number of scalars per track point and number of properties per track
- scalarNames
```
private java.lang.String[] scalarNames
```
  Scalar names and property names
- propNames
```
private java.lang.String[] propNames
```
  Scalar names and property names
- properties
```
private float[][] properties
```
  Properties per track
- reserved
```
private java.lang.String reserved
```
  Reserved for future TrackVis use
- voxelOrder
```
private java.lang.String voxelOrder
```
  Storing order of image data
- pad2
```
private java.lang.String pad2
```
  Paddings
- pad1
```
private java.lang.String pad1
```
  Paddings
- invertXStr
```
private java.lang.String invertXStr
```
  Internal trakcVis use
- invertYStr
```
private java.lang.String invertYStr
```
  Internal trakcVis use
- invertZStr
```
private java.lang.String invertZStr
```
  Internal trakcVis use
- swapXY
```
private java.lang.String swapXY
```
  Internal TrackVis use
- swapYZ
```
private java.lang.String swapYZ
```
  Internal TrackVis use
- swapXZ
```
private java.lang.String swapXZ
```
  Internal TrackVis use
- numTracks
```
private int numTracks
```
  Number of tracts
- version
```
private int version
```
  Version number, current is 2
- hdrSize
```
private int hdrSize
```
  Size of header, should be 1000

Constructor Detail

FileInfoTrackVis

public FileInfoTrackVis(java.lang.String name,
                        java.lang.String directory,
                        int format)

File info storage constructor.

Parameters:: name - file name; directory - directory; format - file format

Method Detail

displayAboutInfo
```
public void displayAboutInfo(JDialogBase dLog,
                             TransMatrix matrix)
```
Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

getNumScalar
```
public int getNumScalar()
```

getNumProp
```
public int getNumProp()
```

getScalarNames

public java.lang.String[] getScalarNames()

getPropNames

public java.lang.String[] getPropNames()

getReserved
```
public java.lang.String getReserved()
```

getVoxelOrder

public java.lang.String getVoxelOrder()

getPad2
```
public java.lang.String getPad2()
```

getPad1
```
public java.lang.String getPad1()
```

getInvertXStr

public java.lang.String getInvertXStr()

getInvertYStr

public java.lang.String getInvertYStr()

getInvertZStr

public java.lang.String getInvertZStr()

getSwapXY
```
public java.lang.String getSwapXY()
```

getSwapYZ
```
public java.lang.String getSwapYZ()
```

getSwapXZ
```
public java.lang.String getSwapXZ()
```

getNumTracts
```
public int getNumTracts()
```

getVersion
```
public int getVersion()
```

getHdrSize
```
public int getHdrSize()
```

getTrackProperties

public float[] getTrackProperties(int i)

getProperties
```
public float[][] getProperties()
```

setProperties

public void setProperties(float[][] properties)

setNumScalar

public void setNumScalar(int numScalar)

setNumProp

public void setNumProp(int numProp)

setScalarNames

public void setScalarNames(java.lang.String[] scalarNames)

setPropNames

public void setPropNames(java.lang.String[] propNames)

setReserved

public void setReserved(java.lang.String reserved)

setVoxelOrder

public void setVoxelOrder(java.lang.String voxelOrder)

setPad2

public void setPad2(java.lang.String pad2)

setPad1

public void setPad1(java.lang.String pad1)

setInvertXStr

public void setInvertXStr(java.lang.String invertXStr)

setInvertYStr

public void setInvertYStr(java.lang.String invertYStr)

setInvertZStr

public void setInvertZStr(java.lang.String invertZStr)

setSwapXY

public void setSwapXY(java.lang.String swapXY)

setSwapYZ

public void setSwapYZ(java.lang.String swapYZ)

setSwapZX

public void setSwapZX(java.lang.String swapXZ)

setNumTracks

public void setNumTracks(int numTracks)

setVersion

public void setVersion(int version)

setHdrSize

public void setHdrSize(int hdrSize)

Class FileInfoTrackVis

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

numScalar

numProp

scalarNames

propNames

properties

reserved

voxelOrder

pad2

pad1

invertXStr

invertYStr

invertZStr

swapXY

swapYZ

swapXZ

numTracks

version

hdrSize

Constructor Detail

FileInfoTrackVis

Method Detail

displayAboutInfo

getNumScalar

getNumProp

getScalarNames

getPropNames

getReserved

getVoxelOrder

getPad2

getPad1

getInvertXStr

getInvertYStr

getInvertZStr

getSwapXY

getSwapYZ

getSwapXZ

getNumTracts

getVersion

getHdrSize

getTrackProperties

getProperties

setProperties

setNumScalar

setNumProp

setScalarNames

setPropNames

setReserved

setVoxelOrder

setPad2

setPad1

setInvertXStr

setInvertYStr

setInvertZStr

setSwapXY

setSwapYZ

setSwapZX

setNumTracks

setVersion

setHdrSize