Package gov.nih.mipav.model.file

Class FileInfoTrackVis

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoTrackVis

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class FileInfoTrackVis
extends FileInfoBase

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private int	hdrSize	Size of header, should be 1000
private java.lang.String	invertXStr	Internal trakcVis use
private java.lang.String	invertYStr	Internal trakcVis use
private java.lang.String	invertZStr	Internal trakcVis use
private int	numProp	Number of scalars per track point and number of properties per track
private int	numScalar	Number of scalars per track point and number of properties per track
private int	numTracks	Number of tracts
private java.lang.String	pad1	Paddings
private java.lang.String	pad2	Paddings
private float[][]	properties	Properties per track
private java.lang.String[]	propNames	Scalar names and property names
private java.lang.String	reserved	Reserved for future TrackVis use
private java.lang.String[]	scalarNames	Scalar names and property names
private java.lang.String	swapXY	Internal TrackVis use
private java.lang.String	swapXZ	Internal TrackVis use
private java.lang.String	swapYZ	Internal TrackVis use
private int	version	Version number, current is 2
private java.lang.String	voxelOrder	Storing order of image data

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoTrackVis(java.lang.String name, java.lang.String directory, int format)	File info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dLog, TransMatrix matrix)	Displays the file information.
int	getHdrSize()
java.lang.String	getInvertXStr()
java.lang.String	getInvertYStr()
java.lang.String	getInvertZStr()
int	getNumProp()
int	getNumScalar()
int	getNumTracts()
java.lang.String	getPad1()
java.lang.String	getPad2()
float[][]	getProperties()
java.lang.String[]	getPropNames()
java.lang.String	getReserved()
java.lang.String[]	getScalarNames()
java.lang.String	getSwapXY()
java.lang.String	getSwapXZ()
java.lang.String	getSwapYZ()
float[]	getTrackProperties(int i)
int	getVersion()
java.lang.String	getVoxelOrder()
void	setHdrSize(int hdrSize)
void	setInvertXStr(java.lang.String invertXStr)
void	setInvertYStr(java.lang.String invertYStr)
void	setInvertZStr(java.lang.String invertZStr)
void	setNumProp(int numProp)
void	setNumScalar(int numScalar)
void	setNumTracks(int numTracks)
void	setPad1(java.lang.String pad1)
void	setPad2(java.lang.String pad2)
void	setProperties(float[][] properties)
void	setPropNames(java.lang.String[] propNames)
void	setReserved(java.lang.String reserved)
void	setScalarNames(java.lang.String[] scalarNames)
void	setSwapXY(java.lang.String swapXY)
void	setSwapYZ(java.lang.String swapYZ)
void	setSwapZX(java.lang.String swapXZ)
void	setVersion(int version)
void	setVoxelOrder(java.lang.String voxelOrder)

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

numScalar

private int numScalar

Number of scalars per track point and number of properties per track

numProp

private int numProp

Number of scalars per track point and number of properties per track

scalarNames

private java.lang.String[] scalarNames

Scalar names and property names

propNames

private java.lang.String[] propNames

Scalar names and property names

properties

private float[][] properties

Properties per track

reserved

private java.lang.String reserved

Reserved for future TrackVis use

voxelOrder

private java.lang.String voxelOrder

Storing order of image data

pad2

private java.lang.String pad2

Paddings

pad1

private java.lang.String pad1

Paddings

invertXStr

private java.lang.String invertXStr

Internal trakcVis use

invertYStr

private java.lang.String invertYStr

Internal trakcVis use

invertZStr

private java.lang.String invertZStr

Internal trakcVis use

swapXY

private java.lang.String swapXY

Internal TrackVis use

swapYZ

private java.lang.String swapYZ

Internal TrackVis use

swapXZ

private java.lang.String swapXZ

Internal TrackVis use

numTracks

private int numTracks

Number of tracts

version

private int version

Version number, current is 2

hdrSize

private int hdrSize

Size of header, should be 1000

Constructor Detail

FileInfoTrackVis

public FileInfoTrackVis(java.lang.String name,
                        java.lang.String directory,
                        int format)

File info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Detail

displayAboutInfo

public void displayAboutInfo(JDialogBase dLog,
                             TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

getNumScalar

public int getNumScalar()

getNumProp

public int getNumProp()

getScalarNames

public java.lang.String[] getScalarNames()

getPropNames

public java.lang.String[] getPropNames()

getReserved

public java.lang.String getReserved()

getVoxelOrder

public java.lang.String getVoxelOrder()

getPad2

public java.lang.String getPad2()

getPad1

public java.lang.String getPad1()

getInvertXStr

public java.lang.String getInvertXStr()

getInvertYStr

public java.lang.String getInvertYStr()

getInvertZStr

public java.lang.String getInvertZStr()

getSwapXY

public java.lang.String getSwapXY()

getSwapYZ

public java.lang.String getSwapYZ()

getSwapXZ

public java.lang.String getSwapXZ()

getNumTracts

public int getNumTracts()

getVersion

public int getVersion()

getHdrSize

public int getHdrSize()

getTrackProperties

public float[] getTrackProperties(int i)

getProperties

public float[][] getProperties()

setProperties

public void setProperties(float[][] properties)

setNumScalar

public void setNumScalar(int numScalar)

setNumProp

public void setNumProp(int numProp)

setScalarNames

public void setScalarNames(java.lang.String[] scalarNames)

setPropNames

public void setPropNames(java.lang.String[] propNames)

setReserved

public void setReserved(java.lang.String reserved)

setVoxelOrder

public void setVoxelOrder(java.lang.String voxelOrder)

setPad2

public void setPad2(java.lang.String pad2)

setPad1

public void setPad1(java.lang.String pad1)

setInvertXStr

public void setInvertXStr(java.lang.String invertXStr)

setInvertYStr

public void setInvertYStr(java.lang.String invertYStr)

setInvertZStr

public void setInvertZStr(java.lang.String invertZStr)

setSwapXY

public void setSwapXY(java.lang.String swapXY)

setSwapYZ

public void setSwapYZ(java.lang.String swapYZ)

setSwapZX

public void setSwapZX(java.lang.String swapXZ)

setNumTracks

public void setNumTracks(int numTracks)

setVersion

public void setVersion(int version)

setHdrSize

public void setHdrSize(int hdrSize)