Package gov.nih.mipav.model.algorithms

Class NoiseLevel

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.NoiseLevel

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

public class NoiseLevel
extends AlgorithmBase

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	NoiseLevel.rowComparator

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
int	BORDER_CONSTANT
int	BORDER_DEFAULT
int	BORDER_REFLECT
int	BORDER_REFLECT_101
int	BORDER_REPLICATE
int	BORDER_WRAP
private double	conf
private int	decim
private int	itr
private int	patchSize

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
NoiseLevel(ModelImage destImg, ModelImage srcImg, int patchSize, int decim, double conf, int itr)

Method Summary

Modifier and Type	Method	Description
double[][]	copyMakeBorder(double[][] src, int top, int bottom, int left, int right, int borderType, double borderValue)
private double[][]	filter2Same(double[][] img, double[][] win)
private double[][]	my_convmtx2(double[][] H, int m, int n)
void	runAlgorithm()	Actually runs the algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

patchSize

private int patchSize

decim

private int decim

conf

private double conf

itr

private int itr

BORDER_CONSTANT

public final int BORDER_CONSTANT

See Also:

Constant Field Values

BORDER_REPLICATE

public final int BORDER_REPLICATE

See Also:

Constant Field Values

BORDER_REFLECT

public final int BORDER_REFLECT

See Also:

Constant Field Values

BORDER_WRAP

public final int BORDER_WRAP

See Also:

Constant Field Values

BORDER_REFLECT_101

public final int BORDER_REFLECT_101

See Also:

Constant Field Values

BORDER_DEFAULT

public final int BORDER_DEFAULT

See Also:

Constant Field Values

Constructor Detail

NoiseLevel

public NoiseLevel(ModelImage destImg,
                  ModelImage srcImg,
                  int patchSize,
                  int decim,
                  double conf,
                  int itr)

Method Detail

runAlgorithm

public void runAlgorithm()

Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

my_convmtx2

private double[][] my_convmtx2(double[][] H,
                               int m,
                               int n)

copyMakeBorder

public double[][] copyMakeBorder(double[][] src,
                                 int top,
                                 int bottom,
                                 int left,
                                 int right,
                                 int borderType,
                                 double borderValue)

filter2Same

private double[][] filter2Same(double[][] img,
                               double[][] win)