Package gov.nih.mipav.view.dialogs

Class JDialogTLRC

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      If user clicks "Set", sets point here and in component image.
      private void computeTrilinearImage​(float[] img, float xi, float yi, float zi, int nix, int niy, int niz, float[] result, int xr, int yr, int zr, int nrx, int nry, int nrz)
      Transforms and resamples volume using trilinear interpolation
      private void convertToTalairach()
      Creates Talairach image based on points that were set in component images.
      private void init()
      Initializes GUI components of dialog.
      private void setAnteriorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets anterior label based on the point.
      private void setInferiorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets inferior label based on the point.
      private void setLeftPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets left label based on the point.
      private void setPosteriorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets posterior label based on the point.
      private void setRightPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets right label based on the point.
      private void setSuperiorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
      Sets superior label based on the point.
      void setTalairachHeader​(ModelImage img)
      add the Talairach Transform to the image header
      private WildMagic.LibFoundation.Mathematics.Vector3f toOriginal​(WildMagic.LibFoundation.Mathematics.Vector3f in)
      to convert frame coordinates into the original image ones
      private void transformTalairachTrilinear​(float[] imgBuffer, double[][] xfrm, float ires, int iXdim, int iYdim, int iZdim, float oXres, float oYres, float oZres, int oXdim, int oYdim, int oZdim, int oXlow, int oYlow, int oZlow, int oXhigh, int oYhigh, int oZhigh, ViewJProgressBar progressBar, ModelImage image)
      Transforms and resamples volume using trilinear interpolation

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • MAX_ALLOWED_DEVIATION

        private static final float MAX_ALLOWED_DEVIATION
        See Also:
        Constant Field Values

      • MIN_ALLOWED_DEVIATION

        private static final float MIN_ALLOWED_DEVIATION
        See Also:
        Constant Field Values

      • talairachImage

        private ModelImage talairachImage

      • applyTalairachButton

        private javax.swing.JButton applyTalairachButton

      • cancelTalairachButton

        private javax.swing.JButton cancelTalairachButton

      • anteriorPt

        private javax.swing.JRadioButton anteriorPt

      • posteriorPt

        private javax.swing.JRadioButton posteriorPt

      • superiorPt

        private javax.swing.JRadioButton superiorPt

      • inferiorPt

        private javax.swing.JRadioButton inferiorPt

      • leftPt

        private javax.swing.JRadioButton leftPt

      • rightPt

        private javax.swing.JRadioButton rightPt

      • setTalairachButton

        private javax.swing.JButton setTalairachButton

      • clearTalairachButton

        private javax.swing.JButton clearTalairachButton

      • anteriorPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f anteriorPt3Df

      • posteriorPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f posteriorPt3Df

      • superiorPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f superiorPt3Df

      • inferiorPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f inferiorPt3Df

      • leftPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f leftPt3Df

      • rightPt3Df

        private WildMagic.LibFoundation.Mathematics.Vector3f rightPt3Df

      • haveAnteriorPt

        private boolean haveAnteriorPt

      • havePosteriorPt

        private boolean havePosteriorPt

      • haveSuperiorPt

        private boolean haveSuperiorPt

      • haveInferiorPt

        private boolean haveInferiorPt

      • haveLeftPt

        private boolean haveLeftPt

      • haveRightPt

        private boolean haveRightPt

      • interpolation

        private int interpolation

    • Constructor Detail

      • JDialogTLRC

        public JDialogTLRC​(ViewJFrameTriImage theParentFrame,
                   ModelImage orig,
                   ModelImage acpc,
                   ModelImage tlrc,
                   TalairachTransformInfo trans,
                   int interp)
        This method creates a dialog for selecting markers used for generating a Talairach view image from an AC-PC aligned view image
        Parameters:
        theParentFrame - The tri planar view frame that called this dialog.
        orig - Image to generate a Talairach view from.
        acpc - ACPC-aligned image
        tlrc - Talairach-aligned image

    • Method Detail

      • init

        private void init()
        Initializes GUI components of dialog.

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        If user clicks "Set", sets point here and in component image. If user clicks "Clear", clears point here and in component image. If user clicks "Apply", creates new Talairach image based on points. If user clicks "Cancel", disposes this dialog.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - Event that triggered this method.

      • setAnteriorPt

        private void setAnteriorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets anterior label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • setPosteriorPt

        private void setPosteriorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets posterior label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • setSuperiorPt

        private void setSuperiorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets superior label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • setInferiorPt

        private void setInferiorPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets inferior label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • setLeftPt

        private void setLeftPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets left label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • setRightPt

        private void setRightPt​(WildMagic.LibFoundation.Mathematics.Vector3f pt)
        Sets right label based on the point. Enables "Apply" if all points have been set.
        Parameters:
        pt - Point that was set.

      • convertToTalairach

        private void convertToTalairach()
        Creates Talairach image based on points that were set in component images.

      • setTalairachHeader

        public void setTalairachHeader​(ModelImage img)
        add the Talairach Transform to the image header

      • toOriginal

        private WildMagic.LibFoundation.Mathematics.Vector3f toOriginal​(WildMagic.LibFoundation.Mathematics.Vector3f in)
        to convert frame coordinates into the original image ones

      • transformTalairachTrilinear

        private void transformTalairachTrilinear​(float[] imgBuffer,
                                         double[][] xfrm,
                                         float ires,
                                         int iXdim,
                                         int iYdim,
                                         int iZdim,
                                         float oXres,
                                         float oYres,
                                         float oZres,
                                         int oXdim,
                                         int oYdim,
                                         int oZdim,
                                         int oXlow,
                                         int oYlow,
                                         int oZlow,
                                         int oXhigh,
                                         int oYhigh,
                                         int oZhigh,
                                         ViewJProgressBar progressBar,
                                         ModelImage image)
        Transforms and resamples volume using trilinear interpolation
        Parameters:
        imgBuffer - Image array.
        xfrm - Transformation matrix to be applied.
        ires - In resolution (same in all dimensions).
        iXdim - In X dimension.
        iYdim - In Y dimension.
        iZdim - In Z dimension.
        oXres - Out X resolution.
        oYres - Out Y resolution.
        oZres - Out Z resolution.
        oXdim - Out X dimension.
        oYdim - Out Y dimension.
        oZdim - Out Z dimension.
        oXlow - Out X low.
        oYlow - Out Y low.
        oZlow - Out Z low.
        oXhigh - Out X high.
        oYhigh - Out Y high.
        oZhigh - Out Z high.
        progressBar - Progress bar.
        image - Image.

      • computeTrilinearImage

        private void computeTrilinearImage​(float[] img,
                                   float xi,
                                   float yi,
                                   float zi,
                                   int nix,
                                   int niy,
                                   int niz,
                                   float[] result,
                                   int xr,
                                   int yr,
                                   int zr,
                                   int nrx,
                                   int nry,
                                   int nrz)
        Transforms and resamples volume using trilinear interpolation