gov.nih.mipav.model.algorithms.utilities.AlgorithmMask

All Implemented Interfaces:: ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmMask extends AlgorithmBase

Allow the user to fill a VOI or fill everything outside the VOI with a specific fill value.

Version:: 0.1 Feb 11, 1998
Author:: Matthew J. McAuliffe, Ph.D.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread
Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler
Field Summary

Fields

Modifier and Type

Field

Description

private float

imageFill

Set the mask areas to this value.

private float

imageFillB

DOCUMENT ME!

private float

imageFillG

DOCUMENT ME!

private float

imageFillI

private float

imageFillR

DOCUMENT ME!

private boolean

polarity

if true then fill inside the VOI.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
Constructor Summary

Constructors

Constructor

Description

AlgorithmMask(ModelImage srcImg, float fill, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage srcImg, float fill, float fillI, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage srcImg, float fillR, float fillG, float fillB, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fill, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fill, float fillI, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fillR, float fillG, float fillB, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.

AlgorithmMask(ModelImage srcImg, Color _fillColor, boolean polarity, boolean useVOI)

Creates a new AlgorithmMask object.
Method Summary

Modifier and Type

Method

Description

void

calcInPlace25D(BitSet mask, float fillValue, int tSlice)

Fills VOI of the source image with fill value.

void

calcInPlace25D(BitSet mask, float fillValue, int tSlice, Vector<Integer> intensityLockVector, boolean showProgressBar)

Fills VOI of the source image with fill value.

void

calcInPlace25DC(BitSet mask, Color fillColor, int tSlice, String rgbString, Vector<Integer> intensityLockVector, boolean showProgressBar)

Fills VOI of the color source image with fill color.

void

calcInPlace25DCMask(BitSet mask, Color fillColor, int tSlice)

Fills VOI of the color source image with fill color.

void

calcInPlace25DMask(BitSet mask, float fillValue, int tSlice)

Fills VOI of the source image with fill value.

void

calcInPlace25DMask(BitSet mask, float fillValue, int tSlice, Vector<Integer> intensityLockVector)

Fills VOI of the source image with fill value.

private void

calcInPlace2D()

Fills VOI of source image with fill value.

private void

calcInPlace2DComplex()

Fills VOI of source image with fill value.

private void

calcInPlace2DRGB()

Fills VOI of source image with fill value.

private void

calcInPlace3D()

Fills VOI of the source image with fill value.

private void

calcInPlace3DComplex()

Fills VOI of the source image with fill value.

private void

calcInPlace3DRGB()

Fills VOI of the source image with fill value.

private void

calcInPlace4D()

Fills VOI of the source image with fill value.

private void

calcInPlace4DComplex()

Fills VOI of the source image with fill value.

private void

calcInPlace4DRGB()

Fills VOI of the source image with fill value.

private void

calcStoreInDest2D()

Fills new image/VOI with new fill value;

private void

calcStoreInDest2DComplex()

Fills new image/VOI with new fill value;

private void

calcStoreInDest2DRGB()

Fills new image/VOI with new fill value;

private void

calcStoreInDest3D()

Fills new image/VOI with new fill value;

private void

calcStoreInDest3DComplex()

Fills new image/VOI with new fill value;

private void

calcStoreInDest3DRGB()

Fills new image/VOI with new fill value;

private void

calcStoreInDest4D()

Fills new image/VOI with new fill value;

private void

calcStoreInDest4DComplex()

Fills new image/VOI with new fill value;

private void

calcStoreInDest4DRGB()

Fills new image/VOI with new fill value;

void

finalize()

Prepares this class for destruction.

void

runAlgorithm()

Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- imageFill
  
  private float imageFill
  
  Set the mask areas to this value.
- imageFillB
  
  private float imageFillB
  
  DOCUMENT ME!
- imageFillG
  
  private float imageFillG
  
  DOCUMENT ME!
- imageFillR
  
  private float imageFillR
  
  DOCUMENT ME!
- imageFillI
  
  private float imageFillI
- polarity
  
  private boolean polarity
  
  if true then fill inside the VOI. If false then fill outside
Constructor Details
- AlgorithmMask
  
  public AlgorithmMask(ModelImage srcImg, float fill, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  srcImg - source image model
  
  fill - value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage srcImg, Color _fillColor, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  srcImg - source image model
  
  _fillColor - color used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fill, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  destImg - image model where result image is to stored
  
  srcImg - source image model
  
  fill - value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage srcImg, float fillR, float fillG, float fillB, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  srcImg - source image model
  
  fillR - red value used to fill a region
  
  fillG - green value used to fill a region
  
  fillB - blue value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fillR, float fillG, float fillB, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  destImg - image model where result image is to stored
  
  srcImg - source image model
  
  fillR - red value used to fill a region
  
  fillG - green value used to fill a region
  
  fillB - blue value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage srcImg, float fill, float fillI, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  srcImg - source image model
  
  fill - real value used to fill a region
  
  fillI - imaginary value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
- AlgorithmMask
  
  public AlgorithmMask(ModelImage destImg, ModelImage srcImg, float fill, float fillI, boolean polarity, boolean useVOI)
  
  Creates a new AlgorithmMask object.
  
  Parameters:
  
  destImg - image model where result image is to stored
  
  srcImg - source image model
  
  fill - real value used to fill a region
  
  fillI - imaginary value used to fill a region
  
  polarity - flag indicating fill location, true = fill inside; false fill outside
  
  useVOI - use the VOI to define the mask area else it will use the painted area to define the mask.
Method Details
- calcInPlace25D
  
  public void calcInPlace25D(BitSet mask, float fillValue, int tSlice)
  
  Fills VOI of the source image with fill value.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillValue - value to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
- calcInPlace25D
  
  public void calcInPlace25D(BitSet mask, float fillValue, int tSlice, Vector<Integer> intensityLockVector, boolean showProgressBar)
  
  Fills VOI of the source image with fill value.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillValue - value to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
  
  intensityLockVector - Vector containing Integer objects that represent the intensity values that are not mutable
- calcInPlace25DC
  
  public void calcInPlace25DC(BitSet mask, Color fillColor, int tSlice, String rgbString, Vector<Integer> intensityLockVector, boolean showProgressBar)
  
  Fills VOI of the color source image with fill color.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillColor - color to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
- calcInPlace25DCMask
  
  public void calcInPlace25DCMask(BitSet mask, Color fillColor, int tSlice)
  
  Fills VOI of the color source image with fill color.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillColor - color to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
- calcInPlace25DMask
  
  public void calcInPlace25DMask(BitSet mask, float fillValue, int tSlice)
  
  Fills VOI of the source image with fill value.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillValue - value to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
- calcInPlace25DMask
  
  public void calcInPlace25DMask(BitSet mask, float fillValue, int tSlice, Vector<Integer> intensityLockVector)
  
  Fills VOI of the source image with fill value.
  
  Parameters:
  
  mask - DOCUMENT ME!
  
  fillValue - value to be placed in the image where the mask is true
  
  tSlice - indicates which volume should be painted (tSlice = 4th dimension)
  
  intensityLockVector - DOCUMENT ME!
- finalize
  
  public void finalize()
  
  Prepares this class for destruction.
  
  Overrides:
  
  finalize in class AlgorithmBase
- runAlgorithm
  
  public void runAlgorithm()
  
  Starts the program.
  
  Specified by:
  
  runAlgorithm in class AlgorithmBase
- calcInPlace2D
  
  private void calcInPlace2D()
  
  Fills VOI of source image with fill value.
- calcInPlace2DComplex
  
  private void calcInPlace2DComplex()
  
  Fills VOI of source image with fill value.
- calcInPlace2DRGB
  
  private void calcInPlace2DRGB()
  
  Fills VOI of source image with fill value.
- calcInPlace3D
  
  private void calcInPlace3D()
  
  Fills VOI of the source image with fill value.
- calcInPlace3DComplex
  
  private void calcInPlace3DComplex()
  
  Fills VOI of the source image with fill value.
- calcInPlace3DRGB
  
  private void calcInPlace3DRGB()
  
  Fills VOI of the source image with fill value.
- calcInPlace4D
  
  private void calcInPlace4D()
  
  Fills VOI of the source image with fill value.
- calcInPlace4DComplex
  
  private void calcInPlace4DComplex()
  
  Fills VOI of the source image with fill value.
- calcInPlace4DRGB
  
  private void calcInPlace4DRGB()
  
  Fills VOI of the source image with fill value.
- calcStoreInDest2D
  
  private void calcStoreInDest2D()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest2DComplex
  
  private void calcStoreInDest2DComplex()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest2DRGB
  
  private void calcStoreInDest2DRGB()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest3D
  
  private void calcStoreInDest3D()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest3DComplex
  
  private void calcStoreInDest3DComplex()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest3DRGB
  
  private void calcStoreInDest3DRGB()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest4D
  
  private void calcStoreInDest4D()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest4DComplex
  
  private void calcStoreInDest4DComplex()
  
  Fills new image/VOI with new fill value;
- calcStoreInDest4DRGB
  
  private void calcStoreInDest4DRGB()
  
  Fills new image/VOI with new fill value;

Class AlgorithmMask

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Details

imageFill

imageFillB

imageFillG

imageFillR

imageFillI

polarity

Constructor Details

AlgorithmMask

AlgorithmMask

AlgorithmMask

AlgorithmMask

AlgorithmMask

AlgorithmMask

AlgorithmMask

Method Details

calcInPlace25D

calcInPlace25D

calcInPlace25DC

calcInPlace25DCMask

calcInPlace25DMask

calcInPlace25DMask

finalize

runAlgorithm

calcInPlace2D

calcInPlace2DComplex

calcInPlace2DRGB

calcInPlace3D

calcInPlace3DComplex

calcInPlace3DRGB

calcInPlace4D

calcInPlace4DComplex

calcInPlace4DRGB

calcStoreInDest2D

calcStoreInDest2DComplex

calcStoreInDest2DRGB

calcStoreInDest3D

calcStoreInDest3DComplex

calcStoreInDest3DRGB

calcStoreInDest4D

calcStoreInDest4DComplex

calcStoreInDest4DRGB