java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogDTICreateListFileRegOAR35DOptions

All Implemented Interfaces:

DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogDTICreateListFileRegOAR35DOptions
extends JDialogBase
```
See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JDialog`	`advancedDialog`	Variables for Advanced Settings dialog.
`private int`	`bracketBound`	DOCUMENT ME!
`private int`	`bracketBound_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`bracketBoundText`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelX`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelY`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelZ`	DOCUMENT ME!
`private float`	`coarseRate`	DOCUMENT ME!
`private javax.swing.JTextField`	`coarseRateText`	DOCUMENT ME!
`private javax.swing.JTextField`	`coarseRateTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`coarseRateTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`coarseRateTextZ`	DOCUMENT ME!
`private float`	`coarseRateX`	DOCUMENT ME!
`private float`	`coarseRateY`	DOCUMENT ME!
`private float`	`coarseRateZ`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxCostFunct`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxDOF`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxInterp`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxInterp2`	DOCUMENT ME!
`private int`	`cost`	DOCUMENT ME!
`private int`	`DOF`	DOCUMENT ME!
`private boolean`	`doMultiThread`
`private boolean`	`doSubsample`	DOCUMENT ME!
`private boolean`	`fastMode`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`fastModeCheckbox`	DOCUMENT ME!
`private javax.swing.JPanel`	`finePanelX`	DOCUMENT ME!
`private javax.swing.JPanel`	`finePanelY`	DOCUMENT ME!
`private javax.swing.JPanel`	`finePanelZ`	DOCUMENT ME!
`private float`	`fineRate`	DOCUMENT ME!
`private javax.swing.JTextField`	`fineRateText`	DOCUMENT ME!
`private javax.swing.JTextField`	`fineRateTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`fineRateTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`fineRateTextZ`	DOCUMENT ME!
`private float`	`fineRateX`	DOCUMENT ME!
`private float`	`fineRateY`	DOCUMENT ME!
`private float`	`fineRateZ`	DOCUMENT ME!
`private java.awt.GridBagConstraints`	`gbc`	DOCUMENT ME!
`private int`	`interp`	DOCUMENT ME!
`private int`	`interp2`	DOCUMENT ME!
`private boolean`	`isDICOM`
`private javax.swing.JLabel`	`labelInterp2`	DOCUMENT ME!
`private int`	`maxIterations`	DOCUMENT ME!
`private int`	`maxIterations_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`maxIterationsText`	DOCUMENT ME!
`private boolean`	`maxOfMinResol`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`minMaxCheckbox`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`multiThreadCheckBox`
`private int`	`numMinima`	DOCUMENT ME!
`private int`	`numMinima_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`numMinText`	DOCUMENT ME!
`private int`	`registerTo`
`private float`	`rotateBegin`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginText`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextZ`	DOCUMENT ME!
`private float`	`rotateBeginX`	DOCUMENT ME!
`private float`	`rotateBeginY`	DOCUMENT ME!
`private float`	`rotateBeginZ`	DOCUMENT ME!
`private float`	`rotateEnd`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndText`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextZ`	DOCUMENT ME!
`private float`	`rotateEndX`	DOCUMENT ME!
`private float`	`rotateEndY`	DOCUMENT ME!
`private float`	`rotateEndZ`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotatePanel`
`private javax.swing.JPanel`	`rotateRangePanelX`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotateRangePanelY`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotateRangePanelZ`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`sampleCheckBox`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JCheckBox`	`universalCheckbox`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`xRadio`	DOCUMENT ME!
`private boolean`	`xSelected`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`yRadio`	DOCUMENT ME!
`private boolean`	`ySelected`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`zRadio`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JDialogDTICreateListFileRegOAR35DOptions(boolean isDICOM)
Creates new dialog for user to choose variables for internal registration.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
`private javax.swing.JDialog`	`buildAdvancedDialog(int bracketBound, int maxIter, int numMinima)`	Build advanced settings dialog.
`int`	`getBracketBound()`
`float`	`getCoarseRate()`
`float`	`getCoarseRateX()`
`float`	`getCoarseRateY()`
`float`	`getCoarseRateZ()`
`int`	`getCost()`
`int`	`getDOF()`
`float`	`getFineRate()`
`float`	`getFineRateX()`
`float`	`getFineRateY()`
`float`	`getFineRateZ()`
`int`	`getInterp()`
`int`	`getInterp2()`
`int`	`getMaxIterations()`
`int`	`getNumMinima()`
`int`	`getRegisterTo()`
`float`	`getRotateBegin()`
`float`	`getRotateBeginX()`
`float`	`getRotateBeginY()`
`float`	`getRotateBeginZ()`
`float`	`getRotateEnd()`
`float`	`getRotateEndX()`
`float`	`getRotateEndY()`
`float`	`getRotateEndZ()`
`private void`	`init()`	Initializes the GUI components and displays the dialog.
`boolean`	`isDoMultiThread()`
`boolean`	`isDoSubsample()`
`boolean`	`isFastMode()`
`boolean`	`isMaxOfMinResol()`
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
`void`	`setBracketBound(int bracketBound)`	Accessor to set bracketBound.
`void`	`setCoarseBegin(float x)`	Accessor to set the coarse sample begin.
`void`	`setCoarseEnd(float x)`	Accessor to set the coarse sample end.
`void`	`setCoarseRate(float x)`	Accessor to set the coarse sample rate.
`void`	`setCostChoice(int x)`	Accessor to set the choice of cost function.
`void`	`setDOF(int x)`	Accessor to set the degrees of freedom.
`void`	`setFastMode(boolean flag)`	Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).
`void`	`setFineRate(float x)`	Accessor to set the fine sample rate.
`void`	`setInterp(int x)`	Accessor to set the initial interpolation.
`void`	`setInterp2(int x)`	Accessor to set the final interpolation.
`void`	`setMaxIterations(int maxIterations)`	Accessor to set maxIterations.
`void`	`setMultiThread(boolean doMultiThread)`	Accessor to set if multithreading is used
`void`	`setNumMinima(int numMinima)`	Accessor to set numMinima.
`void`	`setSubsample(boolean doSubsample)`	Accessor to set whether or not subsampling occurs.
`boolean`	`setVariables()`	Sets the variables needed to call the registration algorithm based on the values entered in the dialog.
`private void`	`showX()`	DOCUMENT ME!
`private void`	`showY()`	DOCUMENT ME!
`private void`	`showZ()`	DOCUMENT ME!
`void`	`windowClosing(java.awt.event.WindowEvent event)`	Disposes of error dialog, then frame.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - advancedDialog
```
private javax.swing.JDialog advancedDialog
```
    Variables for Advanced Settings dialog.
  - bracketBoundText
```
private javax.swing.JTextField bracketBoundText
```
    DOCUMENT ME!
  - maxIterationsText
```
private javax.swing.JTextField maxIterationsText
```
    DOCUMENT ME!
  - numMinText
```
private javax.swing.JTextField numMinText
```
    DOCUMENT ME!
  - comboBoxCostFunct
```
private javax.swing.JComboBox comboBoxCostFunct
```
    DOCUMENT ME!
  - comboBoxDOF
```
private javax.swing.JComboBox comboBoxDOF
```
    DOCUMENT ME!
  - comboBoxInterp
```
private javax.swing.JComboBox comboBoxInterp
```
    DOCUMENT ME!
  - comboBoxInterp2
```
private javax.swing.JComboBox comboBoxInterp2
```
    DOCUMENT ME!
  - cost
```
private int cost
```
    DOCUMENT ME!
  - interp
```
private int interp
```
    DOCUMENT ME!
  - interp2
```
private int interp2
```
    DOCUMENT ME!
  - DOF
```
private int DOF
```
    DOCUMENT ME!
  - doSubsample
```
private boolean doSubsample
```
    DOCUMENT ME!
  - doMultiThread
```
private boolean doMultiThread
```
  - fastMode
```
private boolean fastMode
```
    DOCUMENT ME!
  - fastModeCheckbox
```
private javax.swing.JCheckBox fastModeCheckbox
```
    DOCUMENT ME!
  - maxOfMinResol
```
private boolean maxOfMinResol
```
    DOCUMENT ME!
  - labelInterp2
```
private javax.swing.JLabel labelInterp2
```
    DOCUMENT ME!
  - gbc
```
private java.awt.GridBagConstraints gbc
```
    DOCUMENT ME!
  - xSelected
```
private boolean xSelected
```
    DOCUMENT ME!
  - ySelected
```
private boolean ySelected
```
    DOCUMENT ME!
  - rotatePanel
```
private javax.swing.JPanel rotatePanel
```
  - maxIterations_def
```
private int maxIterations_def
```
    DOCUMENT ME!
  - bracketBound_def
```
private int bracketBound_def
```
    DOCUMENT ME!
  - numMinima_def
```
private int numMinima_def
```
    DOCUMENT ME!
  - maxIterations
```
private int maxIterations
```
    DOCUMENT ME!
  - bracketBound
```
private int bracketBound
```
    DOCUMENT ME!
  - numMinima
```
private int numMinima
```
    DOCUMENT ME!
  - registerTo
```
private int registerTo
```
  - isDICOM
```
private boolean isDICOM
```
  - universalCheckbox
```
private javax.swing.JCheckBox universalCheckbox
```
    DOCUMENT ME!
  - xRadio
```
private javax.swing.JRadioButton xRadio
```
    DOCUMENT ME!
  - yRadio
```
private javax.swing.JRadioButton yRadio
```
    DOCUMENT ME!
  - zRadio
```
private javax.swing.JRadioButton zRadio
```
    DOCUMENT ME!
  - rotateRangePanelX
```
private javax.swing.JPanel rotateRangePanelX
```
    DOCUMENT ME!
  - rotateRangePanelY
```
private javax.swing.JPanel rotateRangePanelY
```
    DOCUMENT ME!
  - rotateRangePanelZ
```
private javax.swing.JPanel rotateRangePanelZ
```
    DOCUMENT ME!
  - finePanelX
```
private javax.swing.JPanel finePanelX
```
    DOCUMENT ME!
  - finePanelY
```
private javax.swing.JPanel finePanelY
```
    DOCUMENT ME!
  - finePanelZ
```
private javax.swing.JPanel finePanelZ
```
    DOCUMENT ME!
  - coarsePanelX
```
private javax.swing.JPanel coarsePanelX
```
    DOCUMENT ME!
  - coarsePanelY
```
private javax.swing.JPanel coarsePanelY
```
    DOCUMENT ME!
  - coarsePanelZ
```
private javax.swing.JPanel coarsePanelZ
```
    DOCUMENT ME!
  - rotateBegin
```
private float rotateBegin
```
    DOCUMENT ME!
  - rotateEnd
```
private float rotateEnd
```
    DOCUMENT ME!
  - coarseRate
```
private float coarseRate
```
    DOCUMENT ME!
  - fineRate
```
private float fineRate
```
    DOCUMENT ME!
  - rotateBeginX
```
private float rotateBeginX
```
    DOCUMENT ME!
  - rotateEndX
```
private float rotateEndX
```
    DOCUMENT ME!
  - coarseRateX
```
private float coarseRateX
```
    DOCUMENT ME!
  - fineRateX
```
private float fineRateX
```
    DOCUMENT ME!
  - rotateBeginY
```
private float rotateBeginY
```
    DOCUMENT ME!
  - rotateEndY
```
private float rotateEndY
```
    DOCUMENT ME!
  - coarseRateY
```
private float coarseRateY
```
    DOCUMENT ME!
  - fineRateY
```
private float fineRateY
```
    DOCUMENT ME!
  - rotateBeginZ
```
private float rotateBeginZ
```
    DOCUMENT ME!
  - rotateEndZ
```
private float rotateEndZ
```
    DOCUMENT ME!
  - coarseRateZ
```
private float coarseRateZ
```
    DOCUMENT ME!
  - fineRateZ
```
private float fineRateZ
```
    DOCUMENT ME!
  - rotateBeginText
```
private javax.swing.JTextField rotateBeginText
```
    DOCUMENT ME!
  - rotateEndText
```
private javax.swing.JTextField rotateEndText
```
    DOCUMENT ME!
  - coarseRateText
```
private javax.swing.JTextField coarseRateText
```
    DOCUMENT ME!
  - fineRateText
```
private javax.swing.JTextField fineRateText
```
    DOCUMENT ME!
  - rotateBeginTextX
```
private javax.swing.JTextField rotateBeginTextX
```
    DOCUMENT ME!
  - rotateEndTextX
```
private javax.swing.JTextField rotateEndTextX
```
    DOCUMENT ME!
  - coarseRateTextX
```
private javax.swing.JTextField coarseRateTextX
```
    DOCUMENT ME!
  - fineRateTextX
```
private javax.swing.JTextField fineRateTextX
```
    DOCUMENT ME!
  - rotateBeginTextY
```
private javax.swing.JTextField rotateBeginTextY
```
    DOCUMENT ME!
  - rotateEndTextY
```
private javax.swing.JTextField rotateEndTextY
```
    DOCUMENT ME!
  - coarseRateTextY
```
private javax.swing.JTextField coarseRateTextY
```
    DOCUMENT ME!
  - fineRateTextY
```
private javax.swing.JTextField fineRateTextY
```
    DOCUMENT ME!
  - rotateBeginTextZ
```
private javax.swing.JTextField rotateBeginTextZ
```
    DOCUMENT ME!
  - rotateEndTextZ
```
private javax.swing.JTextField rotateEndTextZ
```
    DOCUMENT ME!
  - coarseRateTextZ
```
private javax.swing.JTextField coarseRateTextZ
```
    DOCUMENT ME!
  - fineRateTextZ
```
private javax.swing.JTextField fineRateTextZ
```
    DOCUMENT ME!
  - sampleCheckBox
```
private javax.swing.JCheckBox sampleCheckBox
```
    DOCUMENT ME!
  - multiThreadCheckBox
```
private javax.swing.JCheckBox multiThreadCheckBox
```
  - minMaxCheckbox
```
private javax.swing.JCheckBox minMaxCheckbox
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogDTICreateListFileRegOAR35DOptions
```
public JDialogDTICreateListFileRegOAR35DOptions(boolean isDICOM)
```
    Creates new dialog for user to choose variables for internal registration.
    
    Parameters:
    
    theParentFrame - Parent frame.
    
    im - Source image.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - Event that triggered this function.
  - setBracketBound
```
public void setBracketBound(int bracketBound)
```
    Accessor to set bracketBound.
    
    Parameters:
    
    bracketBound - DOCUMENT ME!
  - setCoarseBegin
```
public void setCoarseBegin(float x)
```
    Accessor to set the coarse sample begin.
    
    Parameters:
    
    x - Coarse begin
  - setCoarseEnd
```
public void setCoarseEnd(float x)
```
    Accessor to set the coarse sample end.
    
    Parameters:
    
    x - Coarse end
  - setCoarseRate
```
public void setCoarseRate(float x)
```
    Accessor to set the coarse sample rate.
    
    Parameters:
    
    x - Coarse rate
  - setCostChoice
```
public void setCostChoice(int x)
```
    Accessor to set the choice of cost function.
    
    Parameters:
    
    x - Cost function.
  - setDOF
```
public void setDOF(int x)
```
    Accessor to set the degrees of freedom.
    
    Parameters:
    
    x - Degrees of freedom
  - setFastMode
```
public void setFastMode(boolean flag)
```
    Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).
    
    Parameters:
    
    flag - true then skip to level one (last ) optimization.
  - setFineRate
```
public void setFineRate(float x)
```
    Accessor to set the fine sample rate.
    
    Parameters:
    
    x - Fine rate
  - setInterp
```
public void setInterp(int x)
```
    Accessor to set the initial interpolation.
    
    Parameters:
    
    x - Interpolation
  - setInterp2
```
public void setInterp2(int x)
```
    Accessor to set the final interpolation.
    
    Parameters:
    
    x - Interpolation
  - setMaxIterations
```
public void setMaxIterations(int maxIterations)
```
    Accessor to set maxIterations.
    
    Parameters:
    
    maxIterations - DOCUMENT ME!
  - setNumMinima
```
public void setNumMinima(int numMinima)
```
    Accessor to set numMinima.
    
    Parameters:
    
    numMinima - DOCUMENT ME!
  - setSubsample
```
public void setSubsample(boolean doSubsample)
```
    Accessor to set whether or not subsampling occurs.
    
    Parameters:
    
    doSubsample - DOCUMENT ME!
  - setMultiThread
```
public void setMultiThread(boolean doMultiThread)
```
    Accessor to set if multithreading is used
    
    Parameters:
    
    doMultiThread -
  - buildAdvancedDialog
```
private javax.swing.JDialog buildAdvancedDialog(int bracketBound,
                                                int maxIter,
                                                int numMinima)
```
    Build advanced settings dialog. Returns JDialog.
    
    Parameters:
    
    bracketBound - DOCUMENT ME!
    
    maxIter - DOCUMENT ME!
    
    numMinima - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - init
```
private void init()
```
    Initializes the GUI components and displays the dialog.
  - setVariables
```
public boolean setVariables()
```
    Sets the variables needed to call the registration algorithm based on the values entered in the dialog.
    
    Returns:
    
    true if the variables are properly set, false otherwise.
  - windowClosing
```
public void windowClosing(java.awt.event.WindowEvent event)
```
    Description copied from class: JDialogBase
    
    Disposes of error dialog, then frame. Sets cancelled to true.
    
    Specified by:
    
    windowClosing in interface java.awt.event.WindowListener
    
    Overrides:
    
    windowClosing in class JDialogBase
    
    Parameters:
    
    event - WindowEvent
  - showX
```
private void showX()
```
    DOCUMENT ME!
  - showY
```
private void showY()
```
    DOCUMENT ME!
  - showZ
```
private void showZ()
```
    DOCUMENT ME!
  - getCost
```
public int getCost()
```
  - getDOF
```
public int getDOF()
```
  - getInterp
```
public int getInterp()
```
  - getInterp2
```
public int getInterp2()
```
  - getRegisterTo
```
public int getRegisterTo()
```
  - getRotateBegin
```
public float getRotateBegin()
```
  - getRotateEnd
```
public float getRotateEnd()
```
  - getCoarseRate
```
public float getCoarseRate()
```
  - getFineRate
```
public float getFineRate()
```
  - isDoSubsample
```
public boolean isDoSubsample()
```
  - isDoMultiThread
```
public boolean isDoMultiThread()
```
  - isFastMode
```
public boolean isFastMode()
```
  - getBracketBound
```
public int getBracketBound()
```
  - getMaxIterations
```
public int getMaxIterations()
```
  - getNumMinima
```
public int getNumMinima()
```
  - getCoarseRateX
```
public float getCoarseRateX()
```
  - getCoarseRateZ
```
public float getCoarseRateZ()
```
  - getCoarseRateY
```
public float getCoarseRateY()
```
  - getFineRateX
```
public float getFineRateX()
```
  - getFineRateY
```
public float getFineRateY()
```
  - getFineRateZ
```
public float getFineRateZ()
```
  - getRotateBeginX
```
public float getRotateBeginX()
```
  - getRotateBeginY
```
public float getRotateBeginY()
```
  - getRotateBeginZ
```
public float getRotateBeginZ()
```
  - getRotateEndX
```
public float getRotateEndX()
```
  - getRotateEndY
```
public float getRotateEndY()
```
  - getRotateEndZ
```
public float getRotateEndZ()
```
  - isMaxOfMinResol
```
public boolean isMaxOfMinResol()
```

Class JDialogDTICreateListFileRegOAR35DOptions

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

advancedDialog

bracketBoundText

maxIterationsText

numMinText

comboBoxCostFunct

comboBoxDOF

comboBoxInterp

comboBoxInterp2

cost

interp

interp2

DOF

doSubsample

doMultiThread

fastMode

fastModeCheckbox

maxOfMinResol

labelInterp2

gbc

xSelected

ySelected

rotatePanel

maxIterations_def

bracketBound_def

numMinima_def

maxIterations

bracketBound

numMinima

registerTo

isDICOM

universalCheckbox

xRadio

yRadio

zRadio

rotateRangePanelX

rotateRangePanelY

rotateRangePanelZ

finePanelX

finePanelY

finePanelZ

coarsePanelX

coarsePanelY

coarsePanelZ

rotateBegin

rotateEnd

coarseRate

fineRate

rotateBeginX

rotateEndX

coarseRateX

fineRateX

rotateBeginY

rotateEndY

coarseRateY