java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmAnyTwoImagesSNR

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmAnyTwoImagesSNR
extends AlgorithmBase
```

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`cost`	DOCUMENT ME!
`private boolean`	`createRegImage`	DOCUMENT ME!
`private ModelImage`	`image2`	private ModelImage srcImage;.
`private boolean`	`register`	DOCUMENT ME!
`private boolean`	`scale`
`private ViewUserInterface`	`UI`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmAnyTwoImagesSNR(ModelImage image, ModelImage image2, boolean scale, boolean register, int cost, boolean createRegImage)`	Creates a new AlgorithmAnyTwoImagesSNR object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void finalize()
Prepares this class for destruction.

void runAlgorithm()
starts the algorithm.
- Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
- Methods inherited from class java.lang.Thread
  activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield
- Methods inherited from class java.lang.Object
  equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - cost
```
private int cost
```
    DOCUMENT ME!
  - createRegImage
```
private boolean createRegImage
```
    DOCUMENT ME!
  - image2
```
private ModelImage image2
```
    private ModelImage srcImage;.
  - register
```
private boolean register
```
    DOCUMENT ME!
  - scale
```
private boolean scale
```
  - UI
```
private ViewUserInterface UI
```
    DOCUMENT ME!
- Constructor Detail
  - AlgorithmAnyTwoImagesSNR
```
public AlgorithmAnyTwoImagesSNR(ModelImage image,
                                ModelImage image2,
                                boolean scale,
                                boolean register,
                                int cost,
                                boolean createRegImage)
```
    Creates a new AlgorithmAnyTwoImagesSNR object.
    
    Parameters:
    
    image - First MRI image
    
    image2 - Second MRI image
    
    scale - if true scale image 2 so its min and max match min and max of image 1
    
    register - If true register the image2 to the image before SNR
    
    cost - Cost function used in registration
    
    createRegImage - If register = true and createRegImage = true, then create a frame with the registered image
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    starts the algorithm.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase

Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	starts the algorithm.

Class AlgorithmAnyTwoImagesSNR

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

cost

createRegImage

image2

register

scale

UI

Constructor Detail

AlgorithmAnyTwoImagesSNR

Method Detail

finalize

runAlgorithm