Package gov.nih.mipav.view.renderer.WildMagic.WormUntwisting

Class JPanelAnnotations

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.JPanelAnnotations

All Implemented Interfaces:

AnnotationListener, ActionListener, KeyListener, MouseListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, DocumentListener, ListSelectionListener, TableModelListener, RootPaneContainer, WindowConstants

public class JPanelAnnotations
extends JInterfaceBase
implements ActionListener, AnnotationListener, TableModelListener, ListSelectionListener, KeyListener, ChangeListener, MouseListener, DocumentListener

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

JInterfaceBase.CancelListener, JInterfaceBase.DrawingPanel

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private ListSelectionModel	annotationGroupList
private JTable	annotationGroupTable
private DefaultTableModel	annotationGroupTableModel
private ListSelectionModel	annotationList
private JSplitPane	annotationListPanel
private JSplitPane	annotationPanel
private JTable	annotationTable
private DefaultTableModel	annotationTableModel
private boolean	configured
private JButton	createCurve
private boolean	ctrlKey
private int	currentAnnotationTableRow
private String	currentName
private int	displayChannel
private JCheckBox	displayGroupLabel
private JCheckBox	displayLabel
private JCheckBox	displayMidline
private JCheckBox	displaySurface
private boolean	firstClick
private static GridBagConstraints	gbc
private static GridBagLayout	gbLayout
private VolumeImage	imageA
private JScrollPane	kScrollPane
private ModelImage	mask
private WildMagic.LibGraphics.SceneGraph.TriMesh	mesh
private boolean	previewMode
private JTextField	searchField
private Dimension	searchFieldSize
private int	searchIndex
private VOIContour	segmentationContour
private VOI	segmentationCurve
private String	selectedPrefix
private static final long	serialVersionUID
private JPanelAnnotations	sharedAnnotationPanel
private SurfaceState	surfacState
private JTextField	thresholdMax
private JTextField	thresholdMin
private boolean	useLatticeMarkers
private VOILatticeManagerInterface	voiManager
private JCheckBox	volumeClip
private JSlider	volumeRadius
private VolumeTriPlanarRender	volumeRenderer

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

cancelButton, colorChooser, m_kVolumeViewer, mainPanel, OKButton, rayBasedRenderWM

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
JPanelAnnotations(VOILatticeManagerInterface voiInterface, VolumeTriPlanarRender renderer, VolumeImage imageA)

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)
void	annotationChanged()	AnnotationListeners are updated whenever annotations change in the LatticeModel.
private void	buildAnnotationTable(boolean latticeMarkers)	Creates the table that displays the annotation information.
void	changedUpdate(DocumentEvent e)
void	configureListPanel()
void	dispose()
static int	fill(ModelImage image, float cutOffMin, float cutOffMax, Vector<WildMagic.LibFoundation.Mathematics.Vector3f> seedList, BitSet visited, ModelImage mask)
JSplitPane	getAnnotationsPanel()
static String	getPostfix(String name)
static String	getPrefix(String name)
private int	getRow(JTable table, VOIWormAnnotation text)
VOIWormAnnotation	getSelected()
private VOIWormAnnotation	getSelected(int row, int column, JTable table, VOI annotations)
private VOIWormAnnotation	getSelected(String name, VOI annotations)
JSplitPane	initDisplayAnnotationsPanel(VOILatticeManagerInterface voiInterface, VolumeImage image, boolean latticeMarkers)	The annotations panel is added to the VolumeTriPlanarInterface for display.
JSplitPane	initDisplayAnnotationsPanel(VOILatticeManagerInterface voiInterface, VolumeImage image, boolean latticeMarkers, boolean matchImages)	The annotations panel is added to the VolumeTriPlanarInterface for display.
private static void	initGB()
void	insertUpdate(DocumentEvent e)
void	keyPressed(KeyEvent e)
void	keyReleased(KeyEvent e)
void	keyTyped(KeyEvent e)
void	mouseClicked(MouseEvent e)
void	mouseEntered(MouseEvent arg0)
void	mouseExited(MouseEvent arg0)
void	mousePressed(MouseEvent e)
void	mouseReleased(MouseEvent e)
void	removeUpdate(DocumentEvent e)
private void	searchText()
void	setPreviewMode(boolean preview)
void	setSharedAnnotationPanel(JPanelAnnotations panel)
void	stateChanged(ChangeEvent arg0)
void	tableChanged(TableModelEvent e)
private void	updateTableSelection(ListSelectionEvent e)
void	valueChanged(ListSelectionEvent e)

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.Interface.JInterfaceBase

buildCancelButton, buildOKButton, buildTitledBorder, getMainPanel, setButtonColor, updateColorButton

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

imageA

private VolumeImage imageA

voiManager

private VOILatticeManagerInterface voiManager

volumeRenderer

private VolumeTriPlanarRender volumeRenderer

annotationPanel

private JSplitPane annotationPanel

volumeClip

private JCheckBox volumeClip

volumeRadius

private JSlider volumeRadius

displayLabel

private JCheckBox displayLabel

displayGroupLabel

private JCheckBox displayGroupLabel

annotationList

private ListSelectionModel annotationList

annotationTable

private JTable annotationTable

kScrollPane

private JScrollPane kScrollPane

annotationTableModel

private DefaultTableModel annotationTableModel

useLatticeMarkers

private boolean useLatticeMarkers

annotationGroupList

private ListSelectionModel annotationGroupList

annotationGroupTable

private JTable annotationGroupTable

annotationGroupTableModel

private DefaultTableModel annotationGroupTableModel

selectedPrefix

private String selectedPrefix

displayChannel

private int displayChannel

thresholdMin

private JTextField thresholdMin

thresholdMax

private JTextField thresholdMax

mask

private ModelImage mask

mesh

private WildMagic.LibGraphics.SceneGraph.TriMesh mesh

surfacState

private SurfaceState surfacState

segmentationCurve

private VOI segmentationCurve

segmentationContour

private VOIContour segmentationContour

displayMidline

private JCheckBox displayMidline

displaySurface

private JCheckBox displaySurface

createCurve

private JButton createCurve

searchField

private JTextField searchField

searchFieldSize

private Dimension searchFieldSize

sharedAnnotationPanel

private JPanelAnnotations sharedAnnotationPanel

annotationListPanel

private JSplitPane annotationListPanel

previewMode

private boolean previewMode

currentAnnotationTableRow

private int currentAnnotationTableRow

currentName

private String currentName

gbc

private static GridBagConstraints gbc

gbLayout

private static GridBagLayout gbLayout

configured

private boolean configured

ctrlKey

private boolean ctrlKey

searchIndex

private int searchIndex

firstClick

private boolean firstClick

Constructor Details

JPanelAnnotations

public JPanelAnnotations(VOILatticeManagerInterface voiInterface,
 VolumeTriPlanarRender renderer,
 VolumeImage imageA)

Method Details

dispose

public void dispose()

Overrides:

dispose in class Window

actionPerformed

public void actionPerformed(ActionEvent event)

Specified by:

actionPerformed in interface ActionListener

annotationChanged

public void annotationChanged()

Description copied from interface: AnnotationListener

AnnotationListeners are updated whenever annotations change in the LatticeModel. This enables plugins to track changes and update information displayed in the plugin user-interface.

Specified by:

annotationChanged in interface AnnotationListener

setPreviewMode

public void setPreviewMode(boolean preview)

tableChanged

public void tableChanged(TableModelEvent e)

Specified by:

tableChanged in interface TableModelListener

valueChanged

public void valueChanged(ListSelectionEvent e)

Specified by:

valueChanged in interface ListSelectionListener

buildAnnotationTable

private void buildAnnotationTable(boolean latticeMarkers)

Creates the table that displays the annotation information. The user can edit the annotations directly in the table.

getAnnotationsPanel

public JSplitPane getAnnotationsPanel()

initGB

private static void initGB()

initDisplayAnnotationsPanel

public JSplitPane initDisplayAnnotationsPanel(VOILatticeManagerInterface voiInterface,
 VolumeImage image,
 boolean latticeMarkers)

The annotations panel is added to the VolumeTriPlanarInterface for display.

initDisplayAnnotationsPanel

public JSplitPane initDisplayAnnotationsPanel(VOILatticeManagerInterface voiInterface,
 VolumeImage image,
 boolean latticeMarkers,
 boolean matchImages)

The annotations panel is added to the VolumeTriPlanarInterface for display.

configureListPanel

public void configureListPanel()

keyTyped

public void keyTyped(KeyEvent e)

Specified by:

keyTyped in interface KeyListener

keyPressed

public void keyPressed(KeyEvent e)

Specified by:

keyPressed in interface KeyListener

keyReleased

public void keyReleased(KeyEvent e)

Specified by:

keyReleased in interface KeyListener

stateChanged

public void stateChanged(ChangeEvent arg0)

Specified by:

stateChanged in interface ChangeListener

getPrefix

public static String getPrefix(String name)

getPostfix

public static String getPostfix(String name)

mouseClicked

public void mouseClicked(MouseEvent e)

Specified by:

mouseClicked in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent arg0)

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent arg0)

Specified by:

mouseExited in interface MouseListener

mousePressed

public void mousePressed(MouseEvent e)

Specified by:

mousePressed in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent e)

Specified by:

mouseReleased in interface MouseListener

setSharedAnnotationPanel

public void setSharedAnnotationPanel(JPanelAnnotations panel)

getSelected

public VOIWormAnnotation getSelected()

getSelected

private VOIWormAnnotation getSelected(String name,
 VOI annotations)

getSelected

private VOIWormAnnotation getSelected(int row,
 int column,
 JTable table,
 VOI annotations)

getRow

private int getRow(JTable table,
 VOIWormAnnotation text)

updateTableSelection

private void updateTableSelection(ListSelectionEvent e)

insertUpdate

public void insertUpdate(DocumentEvent e)

Specified by:

insertUpdate in interface DocumentListener

removeUpdate

public void removeUpdate(DocumentEvent e)

Specified by:

removeUpdate in interface DocumentListener

changedUpdate

public void changedUpdate(DocumentEvent e)

Specified by:

changedUpdate in interface DocumentListener

searchText

private void searchText()

fill

public static int fill(ModelImage image,
 float cutOffMin,
 float cutOffMax,
 Vector<WildMagic.LibFoundation.Mathematics.Vector3f> seedList,
 BitSet visited,
 ModelImage mask)