java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        gov.nih.mipav.view.dialogs.JFrameRegistrationMosaic

All Implemented Interfaces:

AlgorithmInterface, java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JFrameRegistrationMosaic
extends javax.swing.JFrame
implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, AlgorithmInterface
```
JFrameRegistrationMosaic is a window/gui that enables the user to manually align two images with the mouse and then call the AlgorithmRegOAR2D registration algorithm to create a mosaic image with the two aligned images. Multiple images can be added to the mosaic and aligned one at a time.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JFrame
  javax.swing.JFrame.AccessibleJFrame
- Nested classes/interfaces inherited from class java.awt.Frame
  java.awt.Frame.AccessibleAWTFrame
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean[][]`	`m_aabReference`	For masking, set to true if the reference image is written into the same location:.
`private boolean[][]`	`m_aabReferenceBackup`	backup:.
`private javax.media.j3d.Shape3D[]`	`m_akBackupBorders`	Backup shape for Undo:.
`private ModelImage[]`	`m_akBackupImages`	Backup Image for Undo:.
`private javax.media.j3d.Shape3D[]`	`m_akBackupPolygons`	Backup shape for Undo:.
`private javax.media.j3d.TransformGroup[]`	`m_akBackupTG`	Backup Transform for Undo:.
`private javax.media.j3d.Shape3D[]`	`m_akBorderShapes`	Reference to the border shape data structure for changing the color based on which image is selected:.
`private ModelImage[]`	`m_akImages`	Reference to the model images:.
`private javax.media.j3d.TransformGroup[]`	`m_akImageTransforms`	Reference and tile image transformations:.
`private javax.media.j3d.Shape3D[]`	`m_akPolygonShapes`	Reference to the texture-mapped polygon on which the image is displayed:.
`private boolean`	`m_bBruteForce`	Brute force default is off:.
`private boolean`	`m_bDisplayTransform`	Display transfromed image in separate window: set to false (no display).
`private boolean`	`m_bDoMultiThread`
`private boolean`	`m_bDoSubsample`	Default subsample set to true:.
`private boolean`	`m_bFileLoaded`	Boolean to check that a file is loaded before mouse operations are allowed to occur.
`private boolean`	`m_bFirst`	For blending the reference and tile images, reference image is not blended with background, reset when initData() is called.
`private boolean`	`m_bResetAlpha`	To reset m_kReferenceAlpha:.
`private boolean`	`m_bSetScale`	True when scale factor should be used:.
`private float`	`m_fCoarseRate`	Default rotation coarse rate, set to 2 degrees:.
`private float`	`m_fFineRate`	Default rotation fine rate, set to 1 degree:.
`private float`	`m_fRotateBegin`	Default rotation start, set to negative 5 degrees:.
`private float`	`m_fRotateEnd`	Default rotation end, set to postive 5 degrees:.
`private float`	`m_fRotationRange`	default rotation range (0).
`private float`	`m_fScale`	Scale factor for large images:.
`private float`	`m_fXScaleRange`	default x scale range (0).
`private float`	`m_fYScaleRange`	default y scale range (0).
`private int`	`m_iCost`	Default cost function, set to correlation ratio (smoothed, weighted):.
`private int`	`m_iDOF`	Default degrees of freedom:.
`private int`	`m_iInterp`	Default image interpolation, set to be bilinear interpolation:.
`private int`	`m_iInterp2`	Default interpolation for the transform algorithm:.
`private int`	`m_iMaxIterations`	Default number of iteration set to 2:.
`private int`	`m_iNumMinima`	Default number of minima to test from level 8 at level 4 (set to 3):.
`private int`	`m_iOpen`	index of the non-selected image:.
`private int`	`m_iOpenSave`	Backup of the open index:.
`private int`	`m_iReference`	Index of the reference image:.
`private int`	`m_iReferenceSave`	Backup of the reference index:.
`private int`	`m_iScaleSteps`	default number of divisions for scale optimazation:.
`private int`	`m_iSelected`	index of the selected image:
`private int`	`m_iTile`	Index of the tile image:.
`private int`	`m_iTranslationRange`	default x,y translation range (0).
`private int`	`m_iXClick`	x,y positions of the mouse when one of the mouse buttons is pressed:.
`private int`	`m_iYClick`	x,y positions of the mouse when one of the mouse buttons is pressed:.
`private javax.swing.JButton`	`m_kAdvancedOptionsButton`	Launches the JDialogRegistrationOAR2D dialog to set registration options:.
`private javax.media.j3d.Canvas3D`	`m_kCanvas`	Drawing canvas:.
`private javax.swing.JButton`	`m_kCloseAllButton`	Close all images and remove them from the scene:.
`private javax.media.j3d.Transform3D`	`m_kCurrentTransform`	current transformation based on mouseDragged event:.
`private javax.swing.JButton`	`m_kHelpButton`	Open the mosaic image help.
`private java.awt.event.MouseEvent`	`m_kMouseEvent`	Reference to the mousePressed event:.
`private javax.media.j3d.Transform3D`	`m_kOldTransform`	Accumulated transformation prior to current mouseDrag:.
`private javax.swing.JButton`	`m_kOpenReferenceButton`	Open reference image:.
`private javax.swing.JButton`	`m_kOpenTileButton`	Open tile image:.
`private ModelImage`	`m_kReferenceAlpha`	For blending between refernce and transformed tile images:.
`private ModelImage`	`m_kReferenceAlphaBackup`	For blending between refernce and transformed tile images:.
`private javax.swing.JButton`	`m_kRegisterButton`	Initialize and start the registration based on how the user positioned the two images:.
`private javax.swing.JButton`	`m_kSaveButton`	Save the mosaic image:.
`private javax.media.j3d.BranchGroup`	`m_kScene`	Scene graph root node:.
`private ModelImage`	`m_kTileAlpha`	For blending between refernce and transformed tile images:.
`private javax.swing.JButton`	`m_kToggleSelectedButton`	Toggle which image is currently selected:.
`private javax.swing.JButton`	`m_kUndoButton`	Undo the last registration for the mosaic image:.
`private com.sun.j3d.utils.universe.SimpleUniverse`	`m_kUniverse`	SimpleUniverse:.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.

Fields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor Description

JFrameRegistrationMosaic()
JFrameRegistrationMosaic - Creates new window for manual (mouse-based) registration of two images.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	actionPerformed - JButton events:
`void`	`algorithmPerformed(AlgorithmBase kAlgorithm)`	algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
`private void`	`backupMosaic()`	backupMosaic -- Backs up the reference & tile polygon shapes, borders, ModelImages, and TransformGroups before the registration is called, so that registration can be undone by the user:
`private void`	`closeAllImages(boolean bResetAlpha)`	closeAllImages -- clears the scenegraph of all displayed images and deletes references to the images:
`private javax.media.j3d.Canvas3D`	`createCanvas(javax.swing.JPanel kPanel)`	createCanvas - Creates the Canvas3D for rendering the images.
`private boolean`	`createMosaicOpenDialog(boolean bSave)`	createMosaicOpenDialog - Creates a file open dialog for image files (.jpg, tiff, etc.).
`private void`	`createTexturedPolygon(javax.media.j3d.TransformGroup kTransformGroup, java.awt.image.BufferedImage kImage, int iWidth, int iHeight, int iWidthPow2, int iHeightPow2)`	createTexturedPolygon - Creates a texture-mapped polygon with the BufferedImage displayed as the texture.
`void`	`dispose()`	dispose - Removes member variables.
`void`	`getVariablesFromDialog(JDialogRegistrationOAR2D kOptionsDialog, boolean bCallAlgorithm)`	Called from inside the JDialogRegistrationOAR2D class when the user has set the parameters and closes the dialog.
`private void`	`initData()`	initData -- Initializes the selected, open, reference and tile indexes.
`private void`	`initGUI()`	initGUI - Initializes GUI toolbar and buttons and displays the registration window.
`void`	`mouseClicked(java.awt.event.MouseEvent e)`	mouseClicked.
`void`	`mouseDragged(java.awt.event.MouseEvent e)`	mouseDragged.
`void`	`mouseEntered(java.awt.event.MouseEvent e)`	mouseEntered.
`void`	`mouseExited(java.awt.event.MouseEvent e)`	mouseExited.
`void`	`mouseMoved(java.awt.event.MouseEvent e)`	mouseMoved.
`void`	`mousePressed(java.awt.event.MouseEvent kMouseEvent)`	mousePressed, store the current transformation for the selected image so the new transformations calculated in the mouseDragged function can be concatenated onto the current transform.
`void`	`mouseReleased(java.awt.event.MouseEvent e)`	mouseReleased.
`private boolean`	`registerImages()`	registerImages - Registers the reference and tile images based on the how the user positions the images with the mouse.
`private void`	`repaintButtons()`
`private boolean`	`saveMosaic()`	saveMosaic -- Opens a save dialog and saves the mosaic image in the selected file format.
`private void`	`storeImage(ModelImage kImage)`	storeImage - creates a BufferedImage from the ModelImage data where the BufferedImage's size is the next-largest power of two from the ModelImage size.
`private void`	`toggleSelectedImage()`	toggleSelectedImage - Toggles which image is currently selected.
`private void`	`undoMosaic()`	undoMosaic -- Restores the backed-up ImageTransforms, PolygonShapes, BorderShapes, and ModelImages after an undo button press:

Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - m_aabReference
```
private boolean[][] m_aabReference
```
    For masking, set to true if the reference image is written into the same location:.
  - m_aabReferenceBackup
```
private boolean[][] m_aabReferenceBackup
```
    backup:.
  - m_akBackupBorders
```
private javax.media.j3d.Shape3D[] m_akBackupBorders
```
    Backup shape for Undo:.
  - m_akBackupImages
```
private ModelImage[] m_akBackupImages
```
    Backup Image for Undo:.
  - m_akBackupPolygons
```
private javax.media.j3d.Shape3D[] m_akBackupPolygons
```
    Backup shape for Undo:.
  - m_akBackupTG
```
private javax.media.j3d.TransformGroup[] m_akBackupTG
```
    Backup Transform for Undo:.
  - m_akBorderShapes
```
private javax.media.j3d.Shape3D[] m_akBorderShapes
```
    Reference to the border shape data structure for changing the color based on which image is selected:.
  - m_akImages
```
private ModelImage[] m_akImages
```
    Reference to the model images:.
  - m_akImageTransforms
```
private javax.media.j3d.TransformGroup[] m_akImageTransforms
```
    Reference and tile image transformations:.
  - m_akPolygonShapes
```
private javax.media.j3d.Shape3D[] m_akPolygonShapes
```
    Reference to the texture-mapped polygon on which the image is displayed:.
  - m_bBruteForce
```
private boolean m_bBruteForce
```
    Brute force default is off:.
  - m_bDisplayTransform
```
private boolean m_bDisplayTransform
```
    Display transfromed image in separate window: set to false (no display).
  - m_bDoSubsample
```
private boolean m_bDoSubsample
```
    Default subsample set to true:.
  - m_bDoMultiThread
```
private boolean m_bDoMultiThread
```
  - m_bFileLoaded
```
private boolean m_bFileLoaded
```
    Boolean to check that a file is loaded before mouse operations are allowed to occur.
  - m_bFirst
```
private boolean m_bFirst
```
    For blending the reference and tile images, reference image is not blended with background, reset when initData() is called.
  - m_bResetAlpha
```
private boolean m_bResetAlpha
```
    To reset m_kReferenceAlpha:.
  - m_bSetScale
```
private boolean m_bSetScale
```
    True when scale factor should be used:.
  - m_fCoarseRate
```
private float m_fCoarseRate
```
    Default rotation coarse rate, set to 2 degrees:.
  - m_fFineRate
```
private float m_fFineRate
```
    Default rotation fine rate, set to 1 degree:.
  - m_fRotateBegin
```
private float m_fRotateBegin
```
    Default rotation start, set to negative 5 degrees:.
  - m_fRotateEnd
```
private float m_fRotateEnd
```
    Default rotation end, set to postive 5 degrees:.
  - m_fRotationRange
```
private float m_fRotationRange
```
    default rotation range (0).
  - m_fScale
```
private float m_fScale
```
    Scale factor for large images:.
  - m_fXScaleRange
```
private float m_fXScaleRange
```
    default x scale range (0).
  - m_fYScaleRange
```
private float m_fYScaleRange
```
    default y scale range (0).
  - m_iCost
```
private int m_iCost
```
    Default cost function, set to correlation ratio (smoothed, weighted):.
  - m_iDOF
```
private int m_iDOF
```
    Default degrees of freedom:.
  - m_iInterp
```
private int m_iInterp
```
    Default image interpolation, set to be bilinear interpolation:.
  - m_iInterp2
```
private int m_iInterp2
```
    Default interpolation for the transform algorithm:.
  - m_iMaxIterations
```
private int m_iMaxIterations
```
    Default number of iteration set to 2:.
  - m_iNumMinima
```
private int m_iNumMinima
```
    Default number of minima to test from level 8 at level 4 (set to 3):.
  - m_iOpen
```
private int m_iOpen
```
    index of the non-selected image:.
  - m_iOpenSave
```
private int m_iOpenSave
```
    Backup of the open index:.
  - m_iReference
```
private int m_iReference
```
    Index of the reference image:.
  - m_iReferenceSave
```
private int m_iReferenceSave
```
    Backup of the reference index:.
  - m_iScaleSteps
```
private int m_iScaleSteps
```
    default number of divisions for scale optimazation:.
  - m_iSelected
```
private int m_iSelected
```
    index of the selected image:
  - m_iTile
```
private int m_iTile
```
    Index of the tile image:.
  - m_iTranslationRange
```
private int m_iTranslationRange
```
    default x,y translation range (0).
  - m_iXClick
```
private int m_iXClick
```
    x,y positions of the mouse when one of the mouse buttons is pressed:.
  - m_iYClick
```
private int m_iYClick
```
    x,y positions of the mouse when one of the mouse buttons is pressed:.
  - m_kAdvancedOptionsButton
```
private javax.swing.JButton m_kAdvancedOptionsButton
```
    Launches the JDialogRegistrationOAR2D dialog to set registration options:.
  - m_kCanvas
```
private javax.media.j3d.Canvas3D m_kCanvas
```
    Drawing canvas:.
  - m_kCloseAllButton
```
private javax.swing.JButton m_kCloseAllButton
```
    Close all images and remove them from the scene:.
  - m_kCurrentTransform
```
private javax.media.j3d.Transform3D m_kCurrentTransform
```
    current transformation based on mouseDragged event:.
  - m_kMouseEvent
```
private java.awt.event.MouseEvent m_kMouseEvent
```
    Reference to the mousePressed event:.
  - m_kOldTransform
```
private javax.media.j3d.Transform3D m_kOldTransform
```
    Accumulated transformation prior to current mouseDrag:.
  - m_kOpenReferenceButton
```
private javax.swing.JButton m_kOpenReferenceButton
```
    Open reference image:.
  - m_kOpenTileButton
```
private javax.swing.JButton m_kOpenTileButton
```
    Open tile image:.
  - m_kReferenceAlpha
```
private ModelImage m_kReferenceAlpha
```
    For blending between refernce and transformed tile images:.
  - m_kReferenceAlphaBackup
```
private ModelImage m_kReferenceAlphaBackup
```
    For blending between refernce and transformed tile images:.
  - m_kRegisterButton
```
private javax.swing.JButton m_kRegisterButton
```
    Initialize and start the registration based on how the user positioned the two images:.
  - m_kSaveButton
```
private javax.swing.JButton m_kSaveButton
```
    Save the mosaic image:.
  - m_kHelpButton
```
private javax.swing.JButton m_kHelpButton
```
    Open the mosaic image help.
  - m_kScene
```
private javax.media.j3d.BranchGroup m_kScene
```
    Scene graph root node:.
  - m_kTileAlpha
```
private ModelImage m_kTileAlpha
```
    For blending between refernce and transformed tile images:.
  - m_kToggleSelectedButton
```
private javax.swing.JButton m_kToggleSelectedButton
```
    Toggle which image is currently selected:.
  - m_kUndoButton
```
private javax.swing.JButton m_kUndoButton
```
    Undo the last registration for the mosaic image:.
  - m_kUniverse
```
private com.sun.j3d.utils.universe.SimpleUniverse m_kUniverse
```
    SimpleUniverse:.
- Constructor Detail
  - JFrameRegistrationMosaic
```
public JFrameRegistrationMosaic()
```
    JFrameRegistrationMosaic - Creates new window for manual (mouse-based) registration of two images.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    actionPerformed - JButton events:
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Parameters:
    
    event - button event
  - repaintButtons
```
private void repaintButtons()
```
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase kAlgorithm)
```
    algorithmPerformed - when the alignment algorithm finishes, the transformed tile is blended with the reference image and displayed:
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    kAlgorithm - AlgorithmBase
  - dispose
```
public void dispose()
```
    dispose - Removes member variables.
    
    Overrides:
    
    dispose in class java.awt.Window
  - getVariablesFromDialog
```
public void getVariablesFromDialog(JDialogRegistrationOAR2D kOptionsDialog,
                                   boolean bCallAlgorithm)
```
    Called from inside the JDialogRegistrationOAR2D class when the user has set the parameters and closes the dialog.
    
    Parameters:
    
    kOptionsDialog - the JDialogRegistrationOAR2D object containing the updated registration parameters
    
    bCallAlgorithm - boolean when true this function activates the registration algorithm, when false, the user must then press the "register images" button to register.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent e)
```
    mouseClicked.
    
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
    mouseDragged.
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    e - MouseEvent
  - mouseEntered
```
public void mouseEntered(java.awt.event.MouseEvent e)
```
    mouseEntered.
    
    Specified by:
    
    mouseEntered in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseExited
```
public void mouseExited(java.awt.event.MouseEvent e)
```
    mouseExited.
    
    Specified by:
    
    mouseExited in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - mouseMoved
```
public void mouseMoved(java.awt.event.MouseEvent e)
```
    mouseMoved.
    
    Specified by:
    
    mouseMoved in interface java.awt.event.MouseMotionListener
    
    Parameters:
    
    e - MouseEvent
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent kMouseEvent)
```
    mousePressed, store the current transformation for the selected image so the new transformations calculated in the mouseDragged function can be concatenated onto the current transform.
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Parameters:
    
    kMouseEvent - MouseEvent
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    mouseReleased.
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Parameters:
    
    e - MouseEvent
  - backupMosaic
```
private void backupMosaic()
```
    backupMosaic -- Backs up the reference & tile polygon shapes, borders, ModelImages, and TransformGroups before the registration is called, so that registration can be undone by the user:
  - closeAllImages
```
private void closeAllImages(boolean bResetAlpha)
```
    closeAllImages -- clears the scenegraph of all displayed images and deletes references to the images:
    
    Parameters:
    
    bResetAlpha - true if all images are closed, false if a new mosaic is created
  - createCanvas
```
private javax.media.j3d.Canvas3D createCanvas(javax.swing.JPanel kPanel)
```
    createCanvas - Creates the Canvas3D for rendering the images.
    
    Parameters:
    
    kPanel - the JPanel that contains the Canvas3D in the frame
    
    Returns:
    
    Canvas3D the new canvas
  - createMosaicOpenDialog
```
private boolean createMosaicOpenDialog(boolean bSave)
```
    createMosaicOpenDialog - Creates a file open dialog for image files (.jpg, tiff, etc.). If a new file is opened it is mapped onto a polygon and placed in the scene graph:
    
    Parameters:
    
    bSave - open file for saving (true) or open file for reading (false)
    
    Returns:
    
    boolean, success or failure for the file open
  - createTexturedPolygon
```
private void createTexturedPolygon(javax.media.j3d.TransformGroup kTransformGroup,
                                   java.awt.image.BufferedImage kImage,
                                   int iWidth,
                                   int iHeight,
                                   int iWidthPow2,
                                   int iHeightPow2)
```
    createTexturedPolygon - Creates a texture-mapped polygon with the BufferedImage displayed as the texture. The texture-mapped polygon is created so that the displayed texture and size of the polygon match the size in pixels of the original image loaded from file -- even when the original image size is not a power of two. The displayed image must match the original data image so that the registration is accurate.
    
    Parameters:
    
    kTransformGroup - the TransformGroup which will contain the new textured polygon in the scene graph
    
    kImage - the BufferedImage, power or two size image, padded if necessary, containing the original image data.
    
    iWidth - the original image width
    
    iHeight - the original image height
    
    iWidthPow2 - the next-largest power of two width
    
    iHeightPow2 - the next-largest power of two height
  - initData
```
private void initData()
```
    initData -- Initializes the selected, open, reference and tile indexes. Called on startup and after a closeAllImages()
  - initGUI
```
private void initGUI()
```
    initGUI - Initializes GUI toolbar and buttons and displays the registration window.
  - registerImages
```
private boolean registerImages()
```
    registerImages - Registers the reference and tile images based on the how the user positions the images with the mouse. Two new registered images are created, each containing one registered sub-image. The AlgorithmRegOAR2D is then called on the two new registered images, to better refine the registration. Upon completion of the registration algorithm, a new mosaic image is created.
    
    Returns:
    
    boolean, sucess/failure of registeration
  - saveMosaic
```
private boolean saveMosaic()
```
    saveMosaic -- Opens a save dialog and saves the mosaic image in the selected file format.
    
    Returns:
    
    boolean, sucess/failure of file save
  - storeImage
```
private void storeImage(ModelImage kImage)
```
    storeImage - creates a BufferedImage from the ModelImage data where the BufferedImage's size is the next-largest power of two from the ModelImage size. The BufferedImage is then passed to the createTexturedPolygon function for display in the scene graph.
    
    Parameters:
    
    kImage - the input ModelImage containing the image data.
  - toggleSelectedImage
```
private void toggleSelectedImage()
```
    toggleSelectedImage - Toggles which image is currently selected. Changes the color of the image borders.
  - undoMosaic
```
private void undoMosaic()
```
    undoMosaic -- Restores the backed-up ImageTransforms, PolygonShapes, BorderShapes, and ModelImages after an undo button press:

Class JFrameRegistrationMosaic

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

serialVersionUID

m_aabReference

m_aabReferenceBackup

m_akBackupBorders

m_akBackupImages

m_akBackupPolygons

m_akBackupTG

m_akBorderShapes

m_akImages

m_akImageTransforms

m_akPolygonShapes

m_bBruteForce

m_bDisplayTransform

m_bDoSubsample

m_bDoMultiThread

m_bFileLoaded

m_bFirst

m_bResetAlpha

m_bSetScale

m_fCoarseRate

m_fFineRate

m_fRotateBegin

m_fRotateEnd

m_fRotationRange

m_fScale

m_fXScaleRange

m_fYScaleRange

m_iCost

m_iDOF

m_iInterp

m_iInterp2

m_iMaxIterations

m_iNumMinima

m_iOpen

m_iOpenSave

m_iReference

m_iReferenceSave

m_iScaleSteps

m_iSelected

m_iTile

m_iTranslationRange

m_iXClick

m_iYClick

m_kAdvancedOptionsButton

m_kCanvas

m_kCloseAllButton

m_kCurrentTransform

m_kMouseEvent

m_kOldTransform

m_kOpenReferenceButton

m_kOpenTileButton

m_kReferenceAlpha

m_kReferenceAlphaBackup

m_kRegisterButton

m_kSaveButton

m_kHelpButton

m_kScene