java.lang.Object
- WildMagic.LibApplications.OpenGLApplication.Application
- - WildMagic.LibApplications.OpenGLApplication.JavaApplication
  - - WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    - - gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
      - gov.nih.mipav.view.renderer.WildMagic.VolumeTriPlanarRenderBase

All Implemented Interfaces:

com.jogamp.opengl.GLEventListener, SpaceNavigatorListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.io.Serializable, java.util.EventListener, javax.swing.event.ChangeListener

Direct Known Subclasses:

VolumeTriPlanarRender
```
public class VolumeTriPlanarRenderBase
extends GPURenderBase
implements com.jogamp.opengl.GLEventListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.awt.event.MouseListener, javax.swing.event.ChangeListener
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class VolumeTriPlanarRenderBase.JPanelGPU

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`animateCurve`
`private LatticeModel`	`animateLatticeModel`
`private boolean`	`animateLattices`
`protected boolean`	`animateSlice`
`private boolean`	`animateStop`
`protected int`	`annotatePtsCounter`	number of annotate points along the specified path.
`protected java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`annotatePtsList`	annotate path planning points list
`private WildMagic.LibFoundation.Mathematics.Vector3f`	`cameraPosition`
`protected static com.jogamp.opengl.GLCapabilities`	`caps`
`private VolumeTriPlanarRenderBase.JPanelGPU`	`container`	main container for this object, contains the scroll pane and the depth slider:
`protected float`	`fSample_mouseDragged`	sample rate when mouse is dragged.
`protected float`	`fSample_mouseReleased`	sample rate when mouse is released.
`protected static int`	`gl_height`
`protected static int`	`gl_width`
`protected static com.jogamp.opengl.GLProfile`	`glp`
`protected static boolean`	`init`
`protected boolean`	`isAnnotateEnabled`	is annotation mode is enabled or not.
`protected boolean`	`isMouseControlEnabled`	is mouse control enabled or not.
`protected boolean`	`isNavigationEnabled`	is nagivation mode enabled or not.
`protected boolean`	`isPathPlanningEnabled`	is path planning mode enabled or not.
`protected WildMagic.LibGraphics.SceneGraph.Polyline`	`kGeometryBranchPath`
`protected WildMagic.LibGraphics.SceneGraph.Polyline`	`kPoly`
`protected WildMagic.LibGraphics.SceneGraph.Node`	`kPolyNode`
`private VOIVector`	`lattice`
`protected boolean`	`latticeClip`
`protected WildMagic.LibFoundation.Mathematics.Vector3f[]`	`latticeClipAxes`
`protected WildMagic.LibFoundation.Mathematics.Box3f`	`latticeClipBox`
`protected float[]`	`latticeClipExtents`
`protected WildMagic.LibFoundation.Mathematics.Vector3f`	`latticeClipPos`
`protected float[]`	`m_afArbEquation`	Arbitrary clip plane equation:
`protected float[]`	`m_afArbEquationInv`
`protected WildMagic.LibGraphics.Rendering.Texture[]`	`m_akSceneTarget`
`protected WildMagic.LibFoundation.Mathematics.ColorRGB[]`	`m_akSlicesColor`
`protected boolean`	`m_bArbClipOn`	Enable Arbitrary clip plane:
`protected boolean`	`m_bCrop`	Set to true when cropping the volume in the shader.
`protected boolean`	`m_bDisplay`
`protected boolean`	`m_bDisplaySecond`	Enables/Disables rendering the second pass.
`protected boolean`	`m_bDropper`
`protected boolean`	`m_bErase`
`protected boolean`	`m_bFirstDisplay`
`protected boolean`	`m_bFirstRender`	The first time the frame is rendererd use the shader to calculate the normals for the volume data.
`protected boolean`	`m_bGeodesicEnabled`	Geodesic enabled on/off.
`protected boolean`	`m_bPaint`
`protected boolean`	`m_bPaintCan`
`protected boolean`	`m_bPaintEnabled`	Painting parameters:
`protected boolean`	`m_bPickCorrespondence`	BrainSurfaceFlattener pick correspondence enabled on/off.
`protected boolean`	`m_bPlay4D`
`protected boolean`	`m_bPlay4DVOIs`
`protected boolean`	`m_bResetImages`
`protected boolean`	`m_bUpdateCenterOnDisplay`
`protected boolean`	`m_bWriteImage`
`protected float`	`m_fAnimateRate`
`protected int`	`m_iAnimateCount`
`protected int`	`m_iBrushSize`
`protected int`	`m_iExtractLevel`	Intensity level for GPU-surface extraction.
`protected int`	`m_iStereo`	Stereo on/off.
`protected WildMagic.LibFoundation.Mathematics.Vector4f`	`m_kArbitraryClip`
`protected WildMagic.LibFoundation.Mathematics.Vector4f`	`m_kArbitraryClipInv`
`protected VolumeDTI`	`m_kDTIDisplay`	DTI renderer.
`protected WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer`	`m_kFBO`
`protected FlyPathGraphCurve`	`m_kFlyPathGraphCurve`	Fly path curve.
`protected WildMagic.LibFoundation.Mathematics.Vector3f`	`m_kNewCenter`
`protected WildMagic.LibFoundation.Mathematics.ColorRGB`	`m_kNormalColorPathUnvisited`	Color for the parts of the path that have not yet been visited (Dark Green)
`protected WildMagic.LibFoundation.Mathematics.ColorRGBA`	`m_kPaintColor`
`protected Sculptor_WM`	`m_kSculptor`	New sculpting object for WM-based sculpting.
`protected VolumeTriPlanarRenderBase`	`m_kShared`
`protected VolumeSlices`	`m_kSlices`	3D Slice renderer.
`protected VolumeBoundingBox`	`m_kVolumeBox`	Volume bounding box renderer.
`protected VolumeClip`	`m_kVolumeClip`	Clipping planes renderer
`protected VolumeOrientationCube`	`m_kVolumeCube`	Orientation cube renderer
`protected VolumeRayCast`	`m_kVolumeRayCast`	GPU-based ray cast renderer.
`protected WildMagic.LibGraphics.SceneGraph.TriMesh`	`m_pkPlane`
`protected WildMagic.LibGraphics.Rendering.Camera`	`m_pkScreenCamera`
`protected WildMagic.LibGraphics.Effects.ShaderEffect`	`m_spkPlaneEffect`
`protected static WildMagic.LibGraphics.Rendering.Texture[]`	`ms_akLUTTexture`
`protected static int`	`ms_NumHistogramLUTs`
`protected NavigationBehavior`	`navigationBehavior`	navigation behavior.
`private javax.swing.JLabel`	`opacityLabel`
`private javax.swing.JSlider`	`opacitySlider`	Opacity sliders for when this renderer is displayed as a stand-alone app.
`private WildMagic.LibGraphics.SceneGraph.TriMesh`	`plane`
`private java.lang.String`	`planeName`
`private VOI`	`planeVOI`
`(package private) boolean`	`profile`
`private int`	`screenShotRotateCount`
`private java.util.Vector<java.awt.image.BufferedImage>`	`screenShots`
`private int`	`segmentIndex`
`private static long`	`serialVersionUID`
`protected com.jogamp.opengl.GLOffscreenAutoDrawable`	`sharedDrawable`
`protected VolumeTriPlanarRender`	`sharedRenderer`
`protected int`	`sliceDir`
`protected WildMagic.LibFoundation.Mathematics.Vector3f`	`sphereClip`
`protected float`	`sphereRadius`
`private boolean`	`takeScreenShot`

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
currentLocation, defaultVelocityRotational, defaultVelocityTranslational, hyperstack, hyperstackColormap, isSpaceNavCodeRunning, m_akLights, m_bDispose, m_bDoClip, m_bExtract, m_bFirstDrag, m_bInit, m_bModified, m_bMouseDrag, m_bPickPending, m_bShared, m_bSnapshot, m_bStandAlone, m_bSurfaceMaskUpdate, m_bSurfaceUpdate, m_bTestFrameRate, m_bVisible, m_fMax, m_fX, m_fY, m_fZ, m_iCaptureFPS, m_iScreenCaptureCounter, m_iXPick, m_iYPick, m_kAnimator, m_kCuller, m_kDeleteList, m_kDisplayList, m_kPicker, m_kSceneToWorld, m_kTranslate, m_kVolumeImageA, m_kVolumeImageA_New, m_kVolumeImageA_Old, m_kVolumeImageB, m_kVolumeImageB_New, m_kVolumeImageB_Old, m_kWinLevel, m_kXRotate, m_kYRotate, m_kZRotate, m_spkCull, m_spkScene, mouseRot, nearPlane, rotPower, rotScalar, transPower, transScalar, updateBoundingCube, zVector, ZXDistanceStep, ZYDistanceStep, ZZDistanceStep

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
cameraParams, m_akWorldAxis, m_bCameraMoveable, m_bDArrowPressed, m_bEndPressed, m_bHomePressed, m_bLArrowPressed, m_bLInsertPressed, m_bObjectZoomed, m_bPgDnPressed, m_bPgUpPressed, m_bRArrowPressed, m_bRDeletePressed, m_bTrackBallDown, m_bUArrowPressed, m_bUseTrackBall, m_dAccumulatedTime, m_dFrameRate, m_dLastTime, m_fRotSpeed, m_fRotSpeedFactor, m_fTrnSpeed, m_fTrnSpeedFactor, m_fXDrag0, m_fXTrack0, m_fXTrack1, m_fYDrag0, m_fYTrack0, m_fYTrack1, m_fZoomSpeed, m_iAccumulatedFrameCount, m_iDoPitch, m_iDoRoll, m_iDoYaw, m_iFrameCount, m_iMaxTimer, m_iMouseButton, m_iTimer, m_kSaveRotate, m_mouseRotSpeed, m_spkCamera, m_spkMotionObject, pitchRotationAngle, rollRotationAngle, xCameraMove, xCameraTurn, yawRotationAngle, yCameraMove, yCameraTurn, zCameraMove

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
m_acWindowTitle, m_eBuffering, m_eDepth, m_eFormat, m_eMultisampling, m_eStencil, m_iHeight, m_iWidth, m_iXPosition, m_iYPosition, m_kBackgroundColor, m_pkRenderer

Constructor Summary

Constructors
Constructor	Description
`VolumeTriPlanarRenderBase()`	Default Constructor.
`VolumeTriPlanarRenderBase(com.jogamp.opengl.util.Animator kAnimator, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the Volume/Surface/Tri-Planar renderer.
`VolumeTriPlanarRenderBase(VolumeImage kVolumeImageA)`	Construct a stand-alone renderer
`VolumeTriPlanarRenderBase(VolumeTriPlanarRenderBase kShared, com.jogamp.opengl.awt.GLCanvas kCanvas, VolumeImage kVolumeImageA, VolumeImage kVolumeImageB)`	Construct the Volume/Surface/Tri-Planar renderer.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addAnimationLattice(VOIVector latticeAnim)`
`void`	`addAnimationVOIs(VOIVector vois)`
`void`	`addGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface, WildMagic.LibGraphics.SceneGraph.Geometry kNew, int iGroup)`	Add a new geodesic component to the surface.
`void`	`addSphereVOIs(VOI annotations)`
`void`	`addSurface(SurfaceState kSurface)`	Add surfaces to the display list.
`void`	`addSurface(SurfaceState kSurface, boolean isFileCoords)`	Add surfaces to the display list.
`void`	`addSurface(SurfaceState kSurface, boolean computeSurfaceMask, boolean isFileCoords)`
`void`	`addTract(VOIContour kContour, WildMagic.LibGraphics.SceneGraph.Polyline kLine, int iGroup)`	Add tract into the DTI display
`void`	`addVolumeVOI(VolumeVOI kVOI)`
`protected void`	`applyClipFilter(boolean clip)`
`boolean`	`applySculpt(boolean bAll)`	Apply the sculpt region to the volume.
`void`	`blend(java.lang.String kSurfaceName, float fValue)`	Sets blending between imageA and imageB.
`void`	`clearSculpt()`	Clear the sculpt region.
`protected boolean`	`clipAnnotations(VOIWormAnnotation text)`
`void`	`CMPMode()`	Display the volume in Composite mode.
`private void`	`CopyShared()`	Called by the init() function.
`private void`	`createContainer(com.jogamp.opengl.awt.GLCanvas canvas)`	Creates the containing JPanel that will display this object.
`protected void`	`CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable kDrawable, int iWidth, int iHeight, boolean forceReload)`	Creates the three render-to-texture targets for rendering semi-transparent surfaces.
`private void`	`createSamplePlane(VOIBase box)`
`protected void`	`CreateScene()`	Called by the init() function.
`void`	`cropClipVolume()`	Crop the clipped volume.
`void`	`deleteVOIs(VOIVector kVOIs)`
`void`	`display(com.jogamp.opengl.GLAutoDrawable arg0)`
`void`	`displayArbitraryClipPlane(boolean bDisplay)`	Displays the arbitrary clip plane position.
`void`	`displayBoundingBox(boolean bDisplay)`	Called from JPanelDisplay.
`void`	`displayClipPlane(int iWhich, boolean bDisplay)`	Called from JPanelClip.
`void`	`displayClipPlane(int iWhich, boolean bDisplay, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Called from JPanelClip.
`void`	`displayNode(WildMagic.LibGraphics.SceneGraph.Node kNode, boolean bDisplay)`	Toggle display of the scene-graphe node on/off.
`void`	`displayOrientationCube(boolean bDisplay)`	Called from JPanelDisplay.
`void`	`displaySurface(boolean bDisplay)`	Toggle surface display on/off.
`void`	`displayVOIs(boolean bDisplay)`	Toggle surface display on/off.
`void`	`displayVolumeRaycast(boolean bDisplay)`	Toggle volume display on/off.
`void`	`displayVolumeSlices(boolean bDisplay)`	Toggle 3D Slice display on/off.
`void`	`dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)`	memory cleanup.
`protected void`	`disposeShared(VolumeImage imageA, VolumeImage imageB)`
`protected void`	`doClip(boolean bEnable)`	Calculates the rotation for the arbitrary clip plane.
`boolean`	`drawVOI(VOIBase kVOI, VolumeTriPlanarRenderBase kDisplay, VolumeImage kVolumeImage, WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)`
`void`	`DRRMode()`	Display the volume in DDR mode.
`void`	`enableArbitraryClipPlane(boolean bEnable, boolean bDisplay, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Enables the arbitrary clip plane position.
`void`	`enableClipPlane(int iWhich, boolean bEnable, boolean bDisplay)`	Enables the axis-aligned clipping planes.
`void`	`enableEyeClipPlane(boolean bEnable, boolean bDisplay, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Enables the eye clip plane.
`void`	`enableEyeInvClipPlane(boolean bEnable, boolean bDisplay, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Enables the inverse-eye clip plane.
`void`	`enableGeodesic(boolean bEnable)`	Enable geodesic curve calculations/display.
`void`	`enablePaint(WildMagic.LibFoundation.Mathematics.ColorRGBA kPaintColor, int iBrushSize, boolean bEnabled, boolean bPaint, boolean bDropper, boolean bPaintCan, boolean bErase)`	Enable painting on TriMesh surfaces.
`void`	`enableSculpt(boolean bSculpt)`	Enables and disables sculpting.
`void`	`eraseAllPaint()`	Erase all surface paint.
`void`	`extractMeshFromVolume()`	Extract a TriMesh surface from the Volume Rendering.
`float`	`getABBlend()`
`WildMagic.LibFoundation.Mathematics.Matrix3f`	`getArbitratyClip()`
`boolean`	`getArbitratyClipOn()`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getClip()`
`boolean[]`	`getClipAEEnable()`
`java.awt.Color[]`	`getClipColor()`
`boolean[]`	`getClipDisplay()`
`boolean[]`	`getClipEnable()`
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getClipInv()`
`boolean[]`	`getClipInvDisplay()`
`boolean[]`	`getClipInvEnable()`
`javax.swing.JPanel`	`getContainingPanel()`	Returns the container for this object.
`boolean`	`getGradientMagnitude()`
`WildMagic.LibFoundation.Mathematics.ColorRGB`	`getGroupColor(int groupID)`	Get the group color with given group ID.
`static WildMagic.LibGraphics.Rendering.Texture`	`getHistogramLUTTexture(int index, boolean bReverse)`
`static int`	`getHistogramLUTTextureIndex(java.lang.String kCommand)`
`float`	`getIPD()`	Sets the inter-pupillary distance for stereo rendering.
`WildMagic.LibGraphics.Rendering.MaterialState`	`getMaterial(java.lang.String kSurfaceName)`	Return the material properties of the given surface.
`float`	`getOpacity(java.lang.String kSurfaceName)`	Return the opacity properties of the given surface.
`java.util.Vector<VOIContour>`	`getPolylines(int iGroup)`
`Sculptor_WM`	`getSculpt()`
`boolean`	`getSculptEnabled()`	Returns true when sculpting is enabled.
`WildMagic.LibGraphics.SceneGraph.TriMesh`	`getSurface(java.lang.String kSurfaceName)`	Return the TriMesh surface with the given name.
`float`	`getSurfaceArea(java.lang.String kSurfaceName)`	Return the surface area for the given TriMesh surface.
`java.lang.String`	`getSurfaceAreaString(java.lang.String kSurfaceName)`	Return the surface area for the given TriMesh surface.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getSurfaceCenter(java.lang.String kSurfaceName)`	Return the center of the TriMesh surface.
`float`	`getSurfaceVolume(java.lang.String kSurfaceName)`	Return the volume of the TriMesh surface.
`java.lang.String`	`getSurfaceVolumeString(java.lang.String kSurfaceName)`	Return the volume of the TriMesh surface.
`WildMagic.LibFoundation.Mathematics.Vector3f`	`getTranslateSurface(java.lang.String kSurfaceName)`	Return the translation vector for the surface with the given name.
`VolumeSurface`	`getVolumeSurface(java.lang.String kSurfaceName)`	Return the TriMesh surface with the given name.
`void`	`init()`
`void`	`init(com.jogamp.opengl.GLAutoDrawable arg0)`	Part of the GLEventListener interface.
`static boolean`	`initClass()`
`private void`	`initLUT(WildMagic.LibGraphics.Rendering.Texture[] m_akLUTTexture, ModelLUT kLUT, int index)`
`protected void`	`initShared(VolumeTriPlanarInterface kParent)`
`void`	`invertSculpt()`	Invert the sculpt region.
`void`	`keyPressed(java.awt.event.KeyEvent e)`	Part of the KeyListener interface.
`private void`	`loadShared()`
`void`	`MIPMode()`	Display the volume in MIP mode.
`void`	`mouseClicked(java.awt.event.MouseEvent arg0)`
`void`	`mouseDragged(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`void`	`mousePressed(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`void`	`mouseReleased(java.awt.event.MouseEvent e)`	Rotates the object with a virtual trackball:
`protected void`	`Move()`	Updates the camera and displayed objects for rendering.
`void`	`MULTIHISTOMode(boolean bOn)`	Display the volume in Mullti-histo mode.
`com.jogamp.opengl.awt.GLCanvas`	`newSharedCanvas()`
`(package private) void`	`NormalKernel(float[] a, float[] b, int width, int height, int depth, int color, int numElements)`
`protected void`	`Pick()`	Picking.
`void`	`pickCorrespondence(boolean bOn)`	Enables/disables picking correspondence points between the mesh and BrainSurfaceFlattener render.
`void`	`play4D(boolean bOn)`
`boolean`	`play4DVOIs()`
`void`	`play4DVOIs(boolean bOn)`
`void`	`reCreateScene(VolumeImage image)`	Called by the init() function.
`void`	`reCreateScene(VolumeImage imageA, VolumeImage imageB)`
`void`	`redrawSurfaceTexture()`	Causes the texture representation of all the surface meshes to be recalculated.
`protected void`	`releaseShared()`
`void`	`reloadShaders()`	Called by the ApplicationGUI.
`void`	`removeAll(java.lang.String kSurfaceName)`
`void`	`removeAllGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface)`	Removes all geodesic components from the given surface.
`void`	`removeAllSurfaces()`
`void`	`removeGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface, int iNode, int iGroup)`	Removes the specific geodesic component from the given surface.
`void`	`removePolyline(int iGroup)`	Removes the specified polyline tract group.
`void`	`removeSurface(java.lang.String kSurfaceName)`	Sets blending between imageA and imageB.
`protected void`	`Render(com.jogamp.opengl.GLAutoDrawable kDraw)`	Render the display list objects without the raycast volume.
`private void`	`RenderSculpt()`	Render the sculpt image.
`private void`	`RenderWithTransparency(boolean bPreRender, WildMagic.LibFoundation.Mathematics.Vector2d[] sortedList)`	Rendering multiple translucent surfaces is accomplished with the following steps: 1.
`void`	`replaceGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kOld, WildMagic.LibGraphics.SceneGraph.TriMesh kNew)`	When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added.
`void`	`resetView()`
`void`	`reshape(com.jogamp.opengl.GLAutoDrawable arg0, int iX, int iY, int iWidth, int iHeight)`	Part of the GLEventListener interface.
`void`	`rollbackToCenter()`	Roll back the image back to center, reset the camera view close to original view.
`boolean`	`save(FileWriteOptions options, int filterType)`	Save the sculpted volume.
`void`	`saveCroppedImage()`	Copies the volume data from the texture representation into the ModelImage and writes it to disk.
`void`	`selfShadow(boolean bShadow)`	Enables/Disables self-shadowing in the Surface mode.
`void`	`setABBlend(float fValue)`	Sets blending between imageA and imageB.
`void`	`setAnimationSpeed(float fValue)`
`void`	`setAnimationSpeed(int value)`
`void`	`setAnnotationVOIColor(java.lang.String name, WildMagic.LibFoundation.Mathematics.ColorRGB color)`
`void`	`setArbColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the arbitrary clip plane color.
`void`	`setArbitraryClipPlane(float f4, boolean bEnable, float thickness)`	Enables the arbitrary clip plane position.
`void`	`setArbitratyClip(WildMagic.LibFoundation.Mathematics.Matrix3f kRotate)`
`void`	`setArbitratyClip(WildMagic.LibFoundation.Mathematics.Matrix3f kRotate, boolean on)`
`void`	`setBackface(java.lang.String kSurfaceName, boolean bOn)`	Turn backface culling on/off for the given surface.
`void`	`setBackgroundColor(WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)`	Sets the background color.
`void`	`setBoundingBoxColor(int i, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the color for the input slice frame.
`void`	`setBoundingBoxColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Called from JPanelDisplay.
`void`	`setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)`	Sets the position of the 3D slices.
`void`	`setClipping(java.lang.String kSurfaceName, boolean bClip)`	Enable clipping for the given surface.
`void`	`setClipPlane(int iWhich, float fValue, boolean bEnable)`	Called from JPanelClip.
`void`	`setClipPlaneColor(int iWhich, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the axis-aligned clip plane color.
`void`	`setColor(java.lang.String kSurfaceName, WildMagic.LibFoundation.Mathematics.ColorRGB kColor, boolean bUpdate)`
`void`	`SetCustomBlend(int iBlendEquation, int iLogicOp, int iSrcBlend, int iDstBlend, WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)`
`void`	`setDisplayAllGlyphs(boolean bDisplay)`	Turns on/off displaying all the glyphs.
`void`	`setDisplayArrows(boolean bDisplay)`	Turns on/off displaying the fiber bundle tracts with 3D arrows.
`void`	`setDisplayCylinders(boolean bDisplay)`	Turns on/off displaying the fiber bundle tracts with ellipsoids.
`void`	`setDisplayEllipsoids(boolean bDisplay)`	Turns on/off displaying the fiber bundle tracts with ellipsoids.
`void`	`setDisplayTubes(boolean bDisplay)`	Turns on/off displaying the fiber bundle tracts with tubes.
`void`	`setDrawingShape(int shape)`	Sets the sculpt drawing shape.
`void`	`setDTIImage(ModelImage kDTIImage, ModelImage kEigenVectorImage, ModelImage kEigenValueImage)`	Sets the DTI Image for displaying the tensors as ellipsoids.
`void`	`setEllipseMod(int iMod)`	Set the m_iEllipsoidMod value.
`void`	`setEyeClipPlane(float f4, boolean bDisplay, boolean bEnable)`	Sets the eye clip plane position.
`void`	`setEyeColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the eye clip plane color.
`void`	`setEyeInvClipPlane(float f4, boolean bDisplay, boolean bEnable)`	Sets the inverse-eye clip plane position.
`void`	`setEyeInvColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the inverse-eye clip plane color.
`void`	`setGradientMagnitude(boolean bShow)`	Enables/Disables Gradient Magnitude filter.
`void`	`setHyperStack(VolumeImage[] images, WildMagic.LibGraphics.Rendering.Texture colormap)`
`void`	`setImageB(VolumeImage imageB)`
`void`	`setImageNew(java.lang.String kSurfaceName, ModelImage kImage)`	Sets the ModelImage to use as an alternative to the volume ModelImage for surface texturing.
`void`	`setImageOn(int which, boolean on)`
`void`	`setImages(VolumeImage imageA)`
`void`	`setIntenstityLevel(int iLevel)`	Set intensity level for GPU-based surface extraction.
`void`	`setIPD(float fIPD)`	Sets the inter-pupillary distance for stereo rendering.
`void`	`setLatticeClip(boolean clip, WildMagic.LibFoundation.Mathematics.Vector3f pos, WildMagic.LibFoundation.Mathematics.Vector3f[] axes, float[] extents)`
`void`	`setLUTNew(java.lang.String kSurfaceName, ModelStorageBase kLUT)`	Sets the LUT to use as an alternative to the volume lut for surface texturing.
`void`	`setMaterial(java.lang.String kSurfaceName, WildMagic.LibGraphics.Rendering.MaterialState kMaterial, boolean bUpdate)`	Sets the material for the given surface.
`void`	`setMouseRotationSpeed(float rotationSpeed)`	Set the mouse rotation speed from the rotation control slider
`void`	`setMouseTranslationSpeed(float translationSpeed)`	Set the mouse translation speed from the translation control slider
`void`	`setMouseZoomSpeed(float zoomSpeed)`	Set the mouse zoom speed from the zoom control slider
`void`	`setPickable(java.lang.String kSurfaceName, boolean bOn)`	Enable surface picking for the given surface.
`void`	`setPlaneConstant(float constant)`	Set the VolumeRayCast front clipping plane constant
`void`	`setPolygonMode(java.lang.String kSurfaceName, WildMagic.LibGraphics.Rendering.WireframeState.FillMode eMode)`	Set the polygon mode (FILL, LINE, POINT) for the given surface.
`void`	`setPolylineColor(int iGroup, WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the polyline color for the specified fiber bundle tract group.
`void`	`setRGBTA(ModelRGB RGBT)`
`void`	`setRGBTB(ModelRGB RGBT)`
`void`	`setSliceOpacity(int i, float fAlpha)`	Set the transparency value for the slice.
`void`	`setStereo(int iWhich)`	Enable/disable stereo rendering.
`void`	`setSurfaceTexture(java.lang.String kSurfaceName, boolean bOn, boolean bUseNewImage, boolean bUseNewLUT)`	Turns on surface texture display for the given surface.
`void`	`setView(WildMagic.LibFoundation.Mathematics.Vector3f[] basisVectors)`
`void`	`setVolumeBlend(float fBlend)`	Sets the blend factor for displaying the ray-cast volume with other objects in the scene.
`void`	`setVolumeColor(boolean flag)`
`int`	`setVolumeSamplesMouseDragged(float fSample)`	Set the sampling rate when the mouse is Dragged.
`int`	`setVolumeSamplesMouseReleased(float fSample)`	Set the sampling rate when the mouse is released.
`void`	`showBoundingBox(int i, boolean bShow)`	Turns on/off displaying the bounding box for the given plane.
`void`	`showSlice(int i, boolean bShow)`	Turns on/off displaying the given plane.
`void`	`smoothMesh(java.lang.String kSurfaceName, int iteration, float alpha, boolean volumeLimit, float volumePercent)`	Smooth the given surface.
`void`	`smoothThree(java.lang.String kSurfaceName, int iteration, float lambda, float mu)`	Smooth the given surface.
`void`	`smoothTwo(java.lang.String kSurfaceName, int iteration, float fStiffness, boolean volumeLimit, float volumePercent)`	Smooth the given surface.
`void`	`startRecording()`
`void`	`startStopVOIAnimation()`
`void`	`stateChanged(javax.swing.event.ChangeEvent arg0)`
`void`	`SURFASTMode()`	Display the volume in Surface mode.
`void`	`SURMode()`	Display the volume in Composite Surface mode.
`void`	`toggleDisplaySurface()`	Toggle Surface display on/off.
`void`	`toggleDisplayVOI()`	Toggle 3D VOI display on/off.
`void`	`toggleDisplayVolume()`	Toggle 3D Volume display on/off.
`void`	`toggleDisplayVolumeSlices()`	Toggle 3D Slice display on/off.
`void`	`toggleGeodesicPathDisplay(java.lang.String kSurfaceName, int iWhich)`	Switches between different ways of displaying the geodesic path (Euclidean, Geodesic, or Mesh).
`void`	`toggleNavigation(boolean _isNavigationEnabled)`	Toggle navigation fly-thru tracking mode
`void`	`translateSurface(java.lang.String kSurfaceName, WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)`	Changes the translation vector for the surface with the given name.
`void`	`undoSculpt(boolean bAll)`	Undo applying the sculpt region to the volume.
`protected void`	`update4D(boolean bForward)`
`protected void`	`update4DVOIs(boolean bForward)`
`protected void`	`updateCenterOnDisplay()`
`void`	`updateData()`	Causes the VolumeShader to update the copy of the ModelImage on the GPU.
`void`	`updateLevWidgetState(java.util.Vector<ClassificationWidget> kLWS)`
`protected void`	`UpdateSceneRotation()`	Updates the displayed objects based on any user mouse rotation.
`protected static void`	`updateSphere(WildMagic.LibGraphics.SceneGraph.TriMesh sphere, float x, float y, float z, WildMagic.LibFoundation.Mathematics.ColorRGBA c)`
`protected void`	`updateVOIs(VOIVector kVOIs)`
`private void`	`writeData(java.lang.String fileName)`

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase
AddNode, checkIfSpaceNavNeedsCalibration, dispose, drawText, fineMovement, GetCanvas, getCounter, getDisplayList, getImage, GetLights, getNearPlane, GetNode, getNormalizedXDim, getNormalizedYDim, getNormalizedZDim, getRotationCutoffValue, getRotationScaleFactor, GetSceneRotation, getSceneToWorldMatrix, getTranslate, getTranslationCutoffValue, getTranslationScaleFactor, getVolumeImage, getVolumeImageB, invertRX, invertRY, invertRZ, invertTX, invertTY, invertTZ, isUseMouseRotationCutoffs, isUseMouseTranslationCutoffs, isVisible, normalMovement, pauseAnimator, processSpaceNavEvent, processSpaceNavEvent, record, reInitialize, RemoveNode, RenderFrameRate, resetAxis, resetAxisX, resetAxisXInv, resetAxisY, saveAVIMovie, saveQuickTimeMovie, setCameraNearPlane, setDefaultLighting, setOrthographicProjection, setPerspectiveProjection, setRotationCutoffValue, setRotationScaleFactor, SetSceneRotation, setTranslationCutoffValue, setTranslationScaleFactor, setUseMouseRotationCutoffs, setUseMouseTranslationCutoffs, setVisible, startAnimator, updateImageFromRotation, updateLighting, writeImage

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
DrawFrameRate, getCameraLocation, getCameraParameters, getObjectParameters, getObjectRotation, InitializeCameraMotion, InitializeCameraMotion, InitializeObjectMotion, keyReleased, keyTyped, LookDown, LookUp, MeasureTime, mouseEntered, mouseExited, mouseMoved, mouseWheelMoved, MoveBackward, MoveCamera, MoveDown, MoveForward, MoveLeft, MoveObject, MoveRight, MoveUp, OnDisplay, OnInitialize, OnTerminate, ResetTime, RotateTrackBall, setCameraLocation, setCameraParameters, setObjectParameters, setObjectRotation, TurnLeft, TurnRight, UpdateCameraRotationSpeed, UpdateCameraTranslationSpeed, UpdateCameraZoomSpeed, UpdateFrameCount, UpdateMouseRotationSpeed

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication
GetAspectRatio, GetHeight, GetRenderer, GetWidth, GetWindowTitle, GetXPosition, GetYPosition, OnIdle, OnMove, OnPrecreate, OnResize, SetRenderer

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application
TestStreaming

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.awt.event.KeyListener
keyReleased, keyTyped

Methods inherited from interface java.awt.event.MouseListener
mouseEntered, mouseExited

Methods inherited from interface java.awt.event.MouseMotionListener
mouseMoved

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    See Also:
    
    Constant Field Values
  - glp
```
protected static com.jogamp.opengl.GLProfile glp
```
  - caps
```
protected static com.jogamp.opengl.GLCapabilities caps
```
  - gl_width
```
protected static int gl_width
```
  - gl_height
```
protected static int gl_height
```
  - sharedRenderer
```
protected VolumeTriPlanarRender sharedRenderer
```
  - sharedDrawable
```
protected com.jogamp.opengl.GLOffscreenAutoDrawable sharedDrawable
```
  - init
```
protected static boolean init
```
  - m_kSculptor
```
protected Sculptor_WM m_kSculptor
```
    New sculpting object for WM-based sculpting.
  - m_afArbEquation
```
protected float[] m_afArbEquation
```
    Arbitrary clip plane equation:
  - m_afArbEquationInv
```
protected float[] m_afArbEquationInv
```
  - m_kArbitraryClip
```
protected WildMagic.LibFoundation.Mathematics.Vector4f m_kArbitraryClip
```
  - m_kArbitraryClipInv
```
protected WildMagic.LibFoundation.Mathematics.Vector4f m_kArbitraryClipInv
```
  - m_bArbClipOn
```
protected boolean m_bArbClipOn
```
    Enable Arbitrary clip plane:
  - m_bDisplaySecond
```
protected boolean m_bDisplaySecond
```
    Enables/Disables rendering the second pass. When disabled, the back-facing polygons of the proxy-geometry are shown instead of the volume:
  - m_kSlices
```
protected VolumeSlices m_kSlices
```
    3D Slice renderer.
  - m_akSlicesColor
```
protected WildMagic.LibFoundation.Mathematics.ColorRGB[] m_akSlicesColor
```
  - m_kVolumeRayCast
```
protected VolumeRayCast m_kVolumeRayCast
```
    GPU-based ray cast renderer.
  - m_kVolumeClip
```
protected VolumeClip m_kVolumeClip
```
    Clipping planes renderer
  - m_kDTIDisplay
```
protected VolumeDTI m_kDTIDisplay
```
    DTI renderer.
  - m_kVolumeBox
```
protected VolumeBoundingBox m_kVolumeBox
```
    Volume bounding box renderer.
  - m_kVolumeCube
```
protected VolumeOrientationCube m_kVolumeCube
```
    Orientation cube renderer
  - m_bFirstRender
```
protected boolean m_bFirstRender
```
    The first time the frame is rendererd use the shader to calculate the normals for the volume data.
  - m_bFirstDisplay
```
protected boolean m_bFirstDisplay
```
  - m_bResetImages
```
protected boolean m_bResetImages
```
  - m_bPaintEnabled
```
protected boolean m_bPaintEnabled
```
    Painting parameters:
  - m_bPaint
```
protected boolean m_bPaint
```
  - m_bErase
```
protected boolean m_bErase
```
  - m_bDropper
```
protected boolean m_bDropper
```
  - m_bPaintCan
```
protected boolean m_bPaintCan
```
  - m_kPaintColor
```
protected WildMagic.LibFoundation.Mathematics.ColorRGBA m_kPaintColor
```
  - m_iBrushSize
```
protected int m_iBrushSize
```
  - m_bGeodesicEnabled
```
protected boolean m_bGeodesicEnabled
```
    Geodesic enabled on/off.
  - m_iStereo
```
protected int m_iStereo
```
    Stereo on/off.
  - m_bPickCorrespondence
```
protected boolean m_bPickCorrespondence
```
    BrainSurfaceFlattener pick correspondence enabled on/off.
  - m_bCrop
```
protected boolean m_bCrop
```
    Set to true when cropping the volume in the shader.
  - m_iExtractLevel
```
protected int m_iExtractLevel
```
    Intensity level for GPU-surface extraction.
  - fSample_mouseReleased
```
protected float fSample_mouseReleased
```
    sample rate when mouse is released.
  - fSample_mouseDragged
```
protected float fSample_mouseDragged
```
    sample rate when mouse is dragged.
  - m_bPlay4D
```
protected boolean m_bPlay4D
```
  - m_bPlay4DVOIs
```
protected boolean m_bPlay4DVOIs
```
  - m_fAnimateRate
```
protected float m_fAnimateRate
```
  - m_iAnimateCount
```
protected int m_iAnimateCount
```
  - m_kFBO
```
protected WildMagic.LibRenderers.OpenGLRenderer.OpenGLFrameBuffer m_kFBO
```
  - m_spkPlaneEffect
```
protected WildMagic.LibGraphics.Effects.ShaderEffect m_spkPlaneEffect
```
  - m_pkPlane
```
protected WildMagic.LibGraphics.SceneGraph.TriMesh m_pkPlane
```
  - m_pkScreenCamera
```
protected WildMagic.LibGraphics.Rendering.Camera m_pkScreenCamera
```
  - m_kShared
```
protected VolumeTriPlanarRenderBase m_kShared
```
  - m_bUpdateCenterOnDisplay
```
protected boolean m_bUpdateCenterOnDisplay
```
  - m_kNewCenter
```
protected WildMagic.LibFoundation.Mathematics.Vector3f m_kNewCenter
```
  - m_bDisplay
```
protected boolean m_bDisplay
```
  - m_akSceneTarget
```
protected WildMagic.LibGraphics.Rendering.Texture[] m_akSceneTarget
```
  - m_bWriteImage
```
protected boolean m_bWriteImage
```
  - ms_NumHistogramLUTs
```
protected static int ms_NumHistogramLUTs
```
  - ms_akLUTTexture
```
protected static WildMagic.LibGraphics.Rendering.Texture[] ms_akLUTTexture
```
  - container
```
private VolumeTriPlanarRenderBase.JPanelGPU container
```
    main container for this object, contains the scroll pane and the depth slider:
  - isNavigationEnabled
```
protected boolean isNavigationEnabled
```
    is nagivation mode enabled or not.
  - navigationBehavior
```
protected NavigationBehavior navigationBehavior
```
    navigation behavior.
  - annotatePtsCounter
```
protected int annotatePtsCounter
```
    number of annotate points along the specified path.
  - annotatePtsList
```
protected java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> annotatePtsList
```
    annotate path planning points list
  - m_kNormalColorPathUnvisited
```
protected WildMagic.LibFoundation.Mathematics.ColorRGB m_kNormalColorPathUnvisited
```
    Color for the parts of the path that have not yet been visited (Dark Green)
  - m_kFlyPathGraphCurve
```
protected FlyPathGraphCurve m_kFlyPathGraphCurve
```
    Fly path curve.
  - isPathPlanningEnabled
```
protected boolean isPathPlanningEnabled
```
    is path planning mode enabled or not.
  - isMouseControlEnabled
```
protected boolean isMouseControlEnabled
```
    is mouse control enabled or not.
  - isAnnotateEnabled
```
protected boolean isAnnotateEnabled
```
    is annotation mode is enabled or not.
  - kPolyNode
```
protected WildMagic.LibGraphics.SceneGraph.Node kPolyNode
```
  - kPoly
```
protected WildMagic.LibGraphics.SceneGraph.Polyline kPoly
```
  - kGeometryBranchPath
```
protected WildMagic.LibGraphics.SceneGraph.Polyline kGeometryBranchPath
```
  - cameraPosition
```
private WildMagic.LibFoundation.Mathematics.Vector3f cameraPosition
```
  - profile
```
boolean profile
```
  - opacitySlider
```
private javax.swing.JSlider opacitySlider
```
    Opacity sliders for when this renderer is displayed as a stand-alone app.
  - opacityLabel
```
private javax.swing.JLabel opacityLabel
```
  - sphereClip
```
protected WildMagic.LibFoundation.Mathematics.Vector3f sphereClip
```
  - sphereRadius
```
protected float sphereRadius
```
  - latticeClip
```
protected boolean latticeClip
```
  - latticeClipPos
```
protected WildMagic.LibFoundation.Mathematics.Vector3f latticeClipPos
```
  - latticeClipAxes
```
protected WildMagic.LibFoundation.Mathematics.Vector3f[] latticeClipAxes
```
  - latticeClipExtents
```
protected float[] latticeClipExtents
```
  - latticeClipBox
```
protected WildMagic.LibFoundation.Mathematics.Box3f latticeClipBox
```
  - animateLattices
```
private boolean animateLattices
```
  - animateStop
```
private boolean animateStop
```
  - takeScreenShot
```
private boolean takeScreenShot
```
  - screenShotRotateCount
```
private int screenShotRotateCount
```
  - animateCurve
```
private boolean animateCurve
```
  - animateSlice
```
protected boolean animateSlice
```
  - sliceDir
```
protected int sliceDir
```
  - animateLatticeModel
```
private LatticeModel animateLatticeModel
```
  - lattice
```
private VOIVector lattice
```
  - planeVOI
```
private VOI planeVOI
```
  - segmentIndex
```
private int segmentIndex
```
  - plane
```
private WildMagic.LibGraphics.SceneGraph.TriMesh plane
```
  - planeName
```
private java.lang.String planeName
```
  - screenShots
```
private java.util.Vector<java.awt.image.BufferedImage> screenShots
```
- Constructor Detail
  - VolumeTriPlanarRenderBase
```
public VolumeTriPlanarRenderBase()
```
    Default Constructor.
  - VolumeTriPlanarRenderBase
```
public VolumeTriPlanarRenderBase(VolumeImage kVolumeImageA)
```
    Construct a stand-alone renderer
    
    Parameters:
    
    kVolumeImageA - volume data and textures for ModelImage A.
  - VolumeTriPlanarRenderBase
```
public VolumeTriPlanarRenderBase(com.jogamp.opengl.util.Animator kAnimator,
                                 VolumeImage kVolumeImageA,
                                 VolumeImage kVolumeImageB)
```
    Construct the Volume/Surface/Tri-Planar renderer.
    
    Parameters:
    
    kParent - parent user-interface and frame.
    
    kAnimator - animator used to display the canvas.
    
    kVolumeImageA - volume data and textures for ModelImage A.
    
    kVolumeImageB - volume data and textures for ModelImage B.
  - VolumeTriPlanarRenderBase
```
public VolumeTriPlanarRenderBase(VolumeTriPlanarRenderBase kShared,
                                 com.jogamp.opengl.awt.GLCanvas kCanvas,
                                 VolumeImage kVolumeImageA,
                                 VolumeImage kVolumeImageB)
```
    Construct the Volume/Surface/Tri-Planar renderer.
    
    Parameters:
    
    kParent - parent user-interface and frame.
    
    kAnimator - animator used to display the canvas.
    
    kVolumeImageA - volume data and textures for ModelImage A.
    
    kVolumeImageB - volume data and textures for ModelImage B.
- Method Detail
  - initClass
```
public static boolean initClass()
```
  - newSharedCanvas
```
public com.jogamp.opengl.awt.GLCanvas newSharedCanvas()
```
  - addGeodesic
```
public void addGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface,
                        WildMagic.LibGraphics.SceneGraph.Geometry kNew,
                        int iGroup)
```
    Add a new geodesic component to the surface.
    
    Parameters:
    
    kSurface - the surface the geodesic component is added to.
    
    kNew - the new geodesic component.
    
    iGroup - the display group to add to.
  - addSurface
```
public void addSurface(SurfaceState kSurface)
```
    Add surfaces to the display list.
    
    Parameters:
    
    akSurfaces -
  - addSurface
```
public void addSurface(SurfaceState kSurface,
                       boolean isFileCoords)
```
    Add surfaces to the display list.
    
    Parameters:
    
    akSurfaces -
  - addSurface
```
public void addSurface(SurfaceState kSurface,
                       boolean computeSurfaceMask,
                       boolean isFileCoords)
```
  - addTract
```
public void addTract(VOIContour kContour,
                     WildMagic.LibGraphics.SceneGraph.Polyline kLine,
                     int iGroup)
```
    Add tract into the DTI display
    
    Parameters:
    
    kLine - polyline
    
    iGroup - counter number
    
    centerIndex - center index color
  - addVolumeVOI
```
public void addVolumeVOI(VolumeVOI kVOI)
```
  - applySculpt
```
public boolean applySculpt(boolean bAll)
```
    Apply the sculpt region to the volume.
  - blend
```
public void blend(java.lang.String kSurfaceName,
                  float fValue)
```
    Sets blending between imageA and imageB.
    
    Parameters:
    
    fValue - the blend value (0-1)
  - clearSculpt
```
public void clearSculpt()
```
    Clear the sculpt region.
  - CMPMode
```
public void CMPMode()
```
    Display the volume in Composite mode.
  - cropClipVolume
```
public void cropClipVolume()
```
    Crop the clipped volume.
  - Move
```
protected void Move()
```
    Description copied from class: GPURenderBase
    
    Updates the camera and displayed objects for rendering.
    
    Overrides:
    
    Move in class GPURenderBase
  - display
```
public void display(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Specified by:
    
    display in interface com.jogamp.opengl.GLEventListener
  - displayArbitraryClipPlane
```
public void displayArbitraryClipPlane(boolean bDisplay)
```
    Displays the arbitrary clip plane position.
    
    Parameters:
    
    bDisplay - on/off.
  - displayBoundingBox
```
public void displayBoundingBox(boolean bDisplay)
```
    Called from JPanelDisplay. Sets the bounding box display on/off.
    
    Parameters:
    
    bDisplay - on/off.
  - displayClipPlane
```
public void displayClipPlane(int iWhich,
                             boolean bDisplay)
```
    Called from JPanelClip. Sets the axis-aligned clip plane display on/off.
    
    Parameters:
    
    iWhich - the clip plane to set.
    
    bDisplay - on/off.
  - displayClipPlane
```
public void displayClipPlane(int iWhich,
                             boolean bDisplay,
                             WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Called from JPanelClip. Sets the axis-aligned clip plane display on/off and color.
    
    Parameters:
    
    iWhich - the clip plane to set.
    
    bDisplay - on/off.
    
    kColor - the clipping plane color.
  - displayNode
```
public void displayNode(WildMagic.LibGraphics.SceneGraph.Node kNode,
                        boolean bDisplay)
```
    Toggle display of the scene-graphe node on/off.
    
    Parameters:
    
    kNode - the node to toggle.
    
    bDisplay - on/off.
  - displayOrientationCube
```
public void displayOrientationCube(boolean bDisplay)
```
    Called from JPanelDisplay. Sets the orientation cube display on/off.
    
    Parameters:
    
    bDisplay - on/off.
  - displaySurface
```
public void displaySurface(boolean bDisplay)
```
    Toggle surface display on/off.
    
    Parameters:
    
    bDisplay -
  - displayVOIs
```
public void displayVOIs(boolean bDisplay)
```
    Toggle surface display on/off.
    
    Parameters:
    
    bDisplay -
  - displayVolumeRaycast
```
public void displayVolumeRaycast(boolean bDisplay)
```
    Toggle volume display on/off.
    
    Parameters:
    
    bDisplay -
  - displayVolumeSlices
```
public void displayVolumeSlices(boolean bDisplay)
```
    Toggle 3D Slice display on/off.
    
    Parameters:
    
    bDisplay -
  - toggleDisplayVolumeSlices
```
public void toggleDisplayVolumeSlices()
```
    Toggle 3D Slice display on/off.
  - toggleDisplaySurface
```
public void toggleDisplaySurface()
```
    Toggle Surface display on/off.
  - toggleDisplayVOI
```
public void toggleDisplayVOI()
```
    Toggle 3D VOI display on/off.
  - toggleDisplayVolume
```
public void toggleDisplayVolume()
```
    Toggle 3D Volume display on/off.
  - dispose
```
public void dispose(com.jogamp.opengl.GLAutoDrawable kDrawable)
```
    Description copied from class: GPURenderBase
    
    memory cleanup.
    
    Specified by:
    
    dispose in interface com.jogamp.opengl.GLEventListener
    
    Overrides:
    
    dispose in class GPURenderBase
  - initShared
```
protected void initShared(VolumeTriPlanarInterface kParent)
```
  - releaseShared
```
protected void releaseShared()
```
  - disposeShared
```
protected void disposeShared(VolumeImage imageA,
                             VolumeImage imageB)
```
  - drawVOI
```
public boolean drawVOI(VOIBase kVOI,
                       VolumeTriPlanarRenderBase kDisplay,
                       VolumeImage kVolumeImage,
                       WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)
```
  - DRRMode
```
public void DRRMode()
```
    Display the volume in DDR mode.
  - enableArbitraryClipPlane
```
public void enableArbitraryClipPlane(boolean bEnable,
                                     boolean bDisplay,
                                     WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Enables the arbitrary clip plane position.
    
    Parameters:
    
    bEnable - clipping enabled
    
    bDisplay - on/off.
    
    kColor - the arbitrary clip plane color.
  - enableClipPlane
```
public void enableClipPlane(int iWhich,
                            boolean bEnable,
                            boolean bDisplay)
```
    Enables the axis-aligned clipping planes.
    
    Parameters:
    
    iWhich - the clip plane to enable.
    
    bEnable - clipping enabled
    
    bDisplay - on/off.
  - enableEyeClipPlane
```
public void enableEyeClipPlane(boolean bEnable,
                               boolean bDisplay,
                               WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Enables the eye clip plane.
    
    Parameters:
    
    bEnable - clipping enabled
    
    bDisplay - on/off.
    
    kColor - the eye clip plane color.
  - enableEyeInvClipPlane
```
public void enableEyeInvClipPlane(boolean bEnable,
                                  boolean bDisplay,
                                  WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Enables the inverse-eye clip plane.
    
    Parameters:
    
    bEnable - clipping enabled
    
    bDisplay - on/off.
    
    kColor - the inverse-eye clip plane color.
  - enableGeodesic
```
public void enableGeodesic(boolean bEnable)
```
    Enable geodesic curve calculations/display.
    
    Parameters:
    
    bEnable -
  - enablePaint
```
public void enablePaint(WildMagic.LibFoundation.Mathematics.ColorRGBA kPaintColor,
                        int iBrushSize,
                        boolean bEnabled,
                        boolean bPaint,
                        boolean bDropper,
                        boolean bPaintCan,
                        boolean bErase)
```
    Enable painting on TriMesh surfaces.
    
    Parameters:
    
    kPaintColor - paint color.
    
    iBrushSize - brush size.
    
    bEnabled - painting on/off.
    
    bPaint - when true apply paint.
    
    bDropper - when true do dropper mode.
    
    bPaintCan - when true do paint can mode.
    
    bErase - when true erase.
  - enableSculpt
```
public void enableSculpt(boolean bSculpt)
```
    Enables and disables sculpting.
    
    Parameters:
    
    bSculpt - true to enable sculpting, false to disable.
  - eraseAllPaint
```
public void eraseAllPaint()
```
    Erase all surface paint.
  - extractMeshFromVolume
```
public void extractMeshFromVolume()
```
    Extract a TriMesh surface from the Volume Rendering.
  - getABBlend
```
public float getABBlend()
```
  - getArbitratyClip
```
public WildMagic.LibFoundation.Mathematics.Matrix3f getArbitratyClip()
```
  - getArbitratyClipOn
```
public boolean getArbitratyClipOn()
```
  - getContainingPanel
```
public javax.swing.JPanel getContainingPanel()
```
    Returns the container for this object. The container has a scroll pane and slider for the depth.
    
    Returns:
  - getGroupColor
```
public WildMagic.LibFoundation.Mathematics.ColorRGB getGroupColor(int groupID)
```
    Get the group color with given group ID.
    
    Parameters:
    
    groupID - given group id
    
    Returns:
    
    ColorRGB group color
  - getIPD
```
public float getIPD()
```
    Sets the inter-pupillary distance for stereo rendering.
    
    Parameters:
    
    fIPD - the IPD value.
  - getMaterial
```
public WildMagic.LibGraphics.Rendering.MaterialState getMaterial(java.lang.String kSurfaceName)
```
    Return the material properties of the given surface.
    
    Parameters:
    
    kSurfaceName - the surface to query.
    
    Returns:
    
    the material properties of the surface.
  - getOpacity
```
public float getOpacity(java.lang.String kSurfaceName)
```
    Return the opacity properties of the given surface.
    
    Parameters:
    
    kSurfaceName - the surface to query.
    
    Returns:
    
    the opacity value of the surface.
  - getSculpt
```
public Sculptor_WM getSculpt()
```
  - getSculptEnabled
```
public boolean getSculptEnabled()
```
    Returns true when sculpting is enabled.
    
    Returns:
    
    true when sculpting is enabled, false otherwise.
  - getSurface
```
public WildMagic.LibGraphics.SceneGraph.TriMesh getSurface(java.lang.String kSurfaceName)
```
    Return the TriMesh surface with the given name.
    
    Parameters:
    
    kSurfaceName - the name of the surface.
    
    Returns:
    
    TriMesh.
  - getVolumeSurface
```
public VolumeSurface getVolumeSurface(java.lang.String kSurfaceName)
```
    Return the TriMesh surface with the given name.
    
    Parameters:
    
    kSurfaceName - the name of the surface.
    
    Returns:
    
    TriMesh.
  - getSurfaceArea
```
public float getSurfaceArea(java.lang.String kSurfaceName)
```
    Return the surface area for the given TriMesh surface.
    
    Parameters:
    
    kSurfaceName - the surface name.
    
    Returns:
    
    the surface-area of the mesh.
  - getSurfaceAreaString
```
public java.lang.String getSurfaceAreaString(java.lang.String kSurfaceName)
```
    Return the surface area for the given TriMesh surface.
    
    Parameters:
    
    kSurfaceName - the surface name.
    
    Returns:
    
    the surface-area of the mesh.
  - getSurfaceCenter
```
public WildMagic.LibFoundation.Mathematics.Vector3f getSurfaceCenter(java.lang.String kSurfaceName)
```
    Return the center of the TriMesh surface.
    
    Parameters:
    
    kSurfaceName - the surface name.
    
    Returns:
    
    the calculated center.
  - getSurfaceVolume
```
public float getSurfaceVolume(java.lang.String kSurfaceName)
```
    Return the volume of the TriMesh surface.
    
    Parameters:
    
    kSurfaceName - the surface name.
    
    Returns:
    
    the calculated volume.
  - getSurfaceVolumeString
```
public java.lang.String getSurfaceVolumeString(java.lang.String kSurfaceName)
```
    Return the volume of the TriMesh surface.
    
    Parameters:
    
    kSurfaceName - the surface name.
    
    Returns:
    
    the calculated volume.
  - getTranslateSurface
```
public WildMagic.LibFoundation.Mathematics.Vector3f getTranslateSurface(java.lang.String kSurfaceName)
```
    Return the translation vector for the surface with the given name.
    
    Parameters:
    
    kSurfaceName - the surface to move.
    
    Returns:
    
    the translation vector
  - init
```
public void init(com.jogamp.opengl.GLAutoDrawable arg0)
```
    Part of the GLEventListener interface. Init is called once when the GLCanvas is first displayed. Called again if the GLCanvas is removed from the frame and added to another window or panel. Initializes the display.
    
    Specified by:
    
    init in interface com.jogamp.opengl.GLEventListener
    
    Parameters:
    
    arg0 - GLCanvas
  - setView
```
public void setView(WildMagic.LibFoundation.Mathematics.Vector3f[] basisVectors)
```
  - resetView
```
public void resetView()
```
  - init
```
public void init()
```
  - invertSculpt
```
public void invertSculpt()
```
    Invert the sculpt region.
  - rollbackToCenter
```
public void rollbackToCenter()
```
    Roll back the image back to center, reset the camera view close to original view.
  - keyPressed
```
public void keyPressed(java.awt.event.KeyEvent e)
```
    Part of the KeyListener interface. Pressing 'b' toggles displaying the proxy-geometry versus the ray-traced volume.
    
    Specified by:
    
    keyPressed in interface java.awt.event.KeyListener
    
    Overrides:
    
    keyPressed in class GPURenderBase
    
    Parameters:
    
    e - the key event.
  - MIPMode
```
public void MIPMode()
```
    Display the volume in MIP mode.
  - mouseClicked
```
public void mouseClicked(java.awt.event.MouseEvent arg0)
```
    Specified by:
    
    mouseClicked in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseClicked in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
  - mouseDragged
```
public void mouseDragged(java.awt.event.MouseEvent e)
```
    Rotates the object with a virtual trackball:
    
    Specified by:
    
    mouseDragged in interface java.awt.event.MouseMotionListener
    
    Overrides:
    
    mouseDragged in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    
    Parameters:
    
    e - the MouseEvent
  - mousePressed
```
public void mousePressed(java.awt.event.MouseEvent e)
```
    Rotates the object with a virtual trackball:
    
    Specified by:
    
    mousePressed in interface java.awt.event.MouseListener
    
    Overrides:
    
    mousePressed in class GPURenderBase
    
    Parameters:
    
    e - the MouseEvent
  - mouseReleased
```
public void mouseReleased(java.awt.event.MouseEvent e)
```
    Rotates the object with a virtual trackball:
    
    Specified by:
    
    mouseReleased in interface java.awt.event.MouseListener
    
    Overrides:
    
    mouseReleased in class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D
    
    Parameters:
    
    e - the MouseEvent
  - MULTIHISTOMode
```
public void MULTIHISTOMode(boolean bOn)
```
    Display the volume in Mullti-histo mode.
  - pickCorrespondence
```
public void pickCorrespondence(boolean bOn)
```
    Enables/disables picking correspondence points between the mesh and BrainSurfaceFlattener render.
    
    Parameters:
    
    bOn -
  - play4D
```
public void play4D(boolean bOn)
```
  - addAnimationVOIs
```
public void addAnimationVOIs(VOIVector vois)
```
  - play4DVOIs
```
public void play4DVOIs(boolean bOn)
```
  - play4DVOIs
```
public boolean play4DVOIs()
```
  - startStopVOIAnimation
```
public void startStopVOIAnimation()
```
  - startRecording
```
public void startRecording()
```
  - setAnnotationVOIColor
```
public void setAnnotationVOIColor(java.lang.String name,
                                  WildMagic.LibFoundation.Mathematics.ColorRGB color)
```
  - redrawSurfaceTexture
```
public void redrawSurfaceTexture()
```
    Causes the texture representation of all the surface meshes to be recalculated.
  - reloadShaders
```
public void reloadShaders()
```
    Called by the ApplicationGUI. Causes the current shader to be reloaded from file, compiled and applied to the proxy-geometry.
    
    Overrides:
    
    reloadShaders in class WildMagic.LibApplications.OpenGLApplication.Application
  - removeAllGeodesic
```
public void removeAllGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface)
```
    Removes all geodesic components from the given surface.
    
    Parameters:
    
    kSurface -
  - removeGeodesic
```
public void removeGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kSurface,
                           int iNode,
                           int iGroup)
```
    Removes the specific geodesic component from the given surface.
    
    Parameters:
    
    kSurface -
    
    iNode -
    
    iGroup -
  - getPolylines
```
public java.util.Vector<VOIContour> getPolylines(int iGroup)
```
  - removePolyline
```
public void removePolyline(int iGroup)
```
    Removes the specified polyline tract group.
    
    Parameters:
    
    iGroup - the group of polylines to remove.
  - removeSurface
```
public void removeSurface(java.lang.String kSurfaceName)
```
    Sets blending between imageA and imageB.
    
    Parameters:
    
    fValue - the blend value (0-1)
  - removeAll
```
public void removeAll(java.lang.String kSurfaceName)
```
  - removeAllSurfaces
```
public void removeAllSurfaces()
```
  - replaceGeodesic
```
public void replaceGeodesic(WildMagic.LibGraphics.SceneGraph.TriMesh kOld,
                            WildMagic.LibGraphics.SceneGraph.TriMesh kNew)
```
    When the Geodesic object cuts the mesh along an open curve, the old mesh changes, but does not need to be deleted and no new mesh needs to be added. This function allows the Geodesic object to replace the original mesh with the sliced mesh in the surface renderer. ReplaceMesh is also used to undo cutting operations.
    
    Parameters:
    
    kOld - TriMesh old surface mesh
    
    kNew - TriMesh new surface mesh
  - reshape
```
public void reshape(com.jogamp.opengl.GLAutoDrawable arg0,
                    int iX,
                    int iY,
                    int iWidth,
                    int iHeight)
```
    Description copied from class: GPURenderBase
    
    Part of the GLEventListener interface. Called when the GLCanvas is resized.
    
    Specified by:
    
    reshape in interface com.jogamp.opengl.GLEventListener
    
    Overrides:
    
    reshape in class GPURenderBase
    
    Parameters:
    
    arg0 - the GLCanvas
    
    iX - the new x-position in screen coordinates.
    
    iY - the new y-position in screen coordinates.
    
    iWidth - the new width
    
    iHeight - the new height
  - save
```
public boolean save(FileWriteOptions options,
                    int filterType)
```
    Save the sculpted volume.
    
    Parameters:
    
    options - file writing options
    
    filtertype -
    
    Returns:
    
    boolean, true on sucess.
  - saveCroppedImage
```
public void saveCroppedImage()
```
    Copies the volume data from the texture representation into the ModelImage and writes it to disk.
  - selfShadow
```
public void selfShadow(boolean bShadow)
```
    Enables/Disables self-shadowing in the Surface mode.
    
    Parameters:
    
    bShadow - shadow on/off.
  - setABBlend
```
public void setABBlend(float fValue)
```
    Sets blending between imageA and imageB.
    
    Parameters:
    
    fValue - the blend value (0-1)
  - setAnimationSpeed
```
public void setAnimationSpeed(float fValue)
```
  - setAnimationSpeed
```
public void setAnimationSpeed(int value)
```
  - setArbColor
```
public void setArbColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the arbitrary clip plane color.
    
    Parameters:
    
    kColor - the new color.
  - setArbitraryClipPlane
```
public void setArbitraryClipPlane(float f4,
                                  boolean bEnable,
                                  float thickness)
```
    Enables the arbitrary clip plane position.
    
    Parameters:
    
    f4 - clip position (same value as aSlice in JPanelClip)
  - setArbitratyClip
```
public void setArbitratyClip(WildMagic.LibFoundation.Mathematics.Matrix3f kRotate)
```
  - setArbitratyClip
```
public void setArbitratyClip(WildMagic.LibFoundation.Mathematics.Matrix3f kRotate,
                             boolean on)
```
  - setBackface
```
public void setBackface(java.lang.String kSurfaceName,
                        boolean bOn)
```
    Turn backface culling on/off for the given surface.
    
    Parameters:
    
    kSurfaceName - surface name.
    
    bOn -
  - setBackgroundColor
```
public void setBackgroundColor(WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)
```
    Sets the background color.
    
    Parameters:
    
    kColor - new background color.
  - setBoundingBoxColor
```
public void setBoundingBoxColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Called from JPanelDisplay. Sets the bounding box color.
    
    Parameters:
    
    kColor - bounding box color.
  - setBoundingBoxColor
```
public void setBoundingBoxColor(int i,
                                WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the color for the input slice frame.
    
    Parameters:
    
    i - , the slice bounding frame.
    
    color - the new color.
  - setCenter
```
public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
```
    Sets the position of the 3D slices.
    
    Parameters:
    
    kCenter - the intersection point of the three slices.
  - setClipping
```
public void setClipping(java.lang.String kSurfaceName,
                        boolean bClip)
```
    Enable clipping for the given surface.
    
    Parameters:
    
    kSurfaceName - the surface to modify.
    
    bClip - true enables clipping, false disables clipping.
  - getClip
```
public WildMagic.LibFoundation.Mathematics.Vector3f getClip()
```
  - getClipEnable
```
public boolean[] getClipEnable()
```
  - getClipAEEnable
```
public boolean[] getClipAEEnable()
```
  - getClipDisplay
```
public boolean[] getClipDisplay()
```
  - getClipInv
```
public WildMagic.LibFoundation.Mathematics.Vector3f getClipInv()
```
  - getClipInvEnable
```
public boolean[] getClipInvEnable()
```
  - getClipInvDisplay
```
public boolean[] getClipInvDisplay()
```
  - getClipColor
```
public java.awt.Color[] getClipColor()
```
  - setClipPlane
```
public void setClipPlane(int iWhich,
                         float fValue,
                         boolean bEnable)
```
    Called from JPanelClip. Sets the axis-aligned clip plane.
    
    Parameters:
    
    iWhich - the clip plane to set.
    
    fValue - the new position of the clip plane (the same value as the slider in JPanelClip).
  - setClipPlaneColor
```
public void setClipPlaneColor(int iWhich,
                              WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the axis-aligned clip plane color.
    
    Parameters:
    
    iWhich - one of the 6 clip planes
    
    kColor - the new color.
  - setColor
```
public void setColor(java.lang.String kSurfaceName,
                     WildMagic.LibFoundation.Mathematics.ColorRGB kColor,
                     boolean bUpdate)
```
    Parameters:
    
    kSurfaceName -
    
    kColor -
    
    bUpdate -
  - SetCustomBlend
```
public void SetCustomBlend(int iBlendEquation,
                           int iLogicOp,
                           int iSrcBlend,
                           int iDstBlend,
                           WildMagic.LibFoundation.Mathematics.ColorRGBA kColor)
```
  - setDisplayAllGlyphs
```
public void setDisplayAllGlyphs(boolean bDisplay)
```
    Turns on/off displaying all the glyphs.
    
    Parameters:
    
    bDisplay - when true display all the glyphs in the volume.
  - setDisplayArrows
```
public void setDisplayArrows(boolean bDisplay)
```
    Turns on/off displaying the fiber bundle tracts with 3D arrows.
    
    Parameters:
    
    bDisplay - when true display the tracts with 3D arrows.
  - setDisplayCylinders
```
public void setDisplayCylinders(boolean bDisplay)
```
    Turns on/off displaying the fiber bundle tracts with ellipsoids.
    
    Parameters:
    
    bDisplay - when true display the tracts with Cylinders.
  - setDisplayEllipsoids
```
public void setDisplayEllipsoids(boolean bDisplay)
```
    Turns on/off displaying the fiber bundle tracts with ellipsoids.
    
    Parameters:
    
    bDisplay - when true display the tracts with ellipsods.
  - setDisplayTubes
```
public void setDisplayTubes(boolean bDisplay)
```
    Turns on/off displaying the fiber bundle tracts with tubes.
    
    Parameters:
    
    bDisplay - when true display the tracts with tubes.
  - setDrawingShape
```
public void setDrawingShape(int shape)
```
    Sets the sculpt drawing shape.
    
    Parameters:
    
    shape - (0 = free-hand, 1 = rectangular)
  - setDTIImage
```
public void setDTIImage(ModelImage kDTIImage,
                        ModelImage kEigenVectorImage,
                        ModelImage kEigenValueImage)
```
    Sets the DTI Image for displaying the tensors as ellipsoids.
    
    Parameters:
    
    kDTIImage - .
  - setEllipseMod
```
public void setEllipseMod(int iMod)
```
    Set the m_iEllipsoidMod value.
    
    Parameters:
    
    iMod - new m_iEllipsoidMod value.
  - setEyeClipPlane
```
public void setEyeClipPlane(float f4,
                            boolean bDisplay,
                            boolean bEnable)
```
    Sets the eye clip plane position.
    
    Parameters:
    
    f4 - clip position (same value as sSlice in JPanelClip)
    
    bDisplay - on/off.
  - setEyeColor
```
public void setEyeColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the eye clip plane color.
    
    Parameters:
    
    kColor - the new color.
  - setEyeInvClipPlane
```
public void setEyeInvClipPlane(float f4,
                               boolean bDisplay,
                               boolean bEnable)
```
    Sets the inverse-eye clip plane position.
    
    Parameters:
    
    f4 - clip position (same value as sSliceInv in JPanelClip)
    
    bDisplay - on/off.
  - setEyeInvColor
```
public void setEyeInvColor(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the inverse-eye clip plane color.
    
    Parameters:
    
    kColor - the new color.
  - getGradientMagnitude
```
public boolean getGradientMagnitude()
```
  - setGradientMagnitude
```
public void setGradientMagnitude(boolean bShow)
```
    Enables/Disables Gradient Magnitude filter.
    
    Parameters:
    
    bShow - gradient magnitude filter on/off
  - setImages
```
public void setImages(VolumeImage imageA)
```
  - setImageB
```
public void setImageB(VolumeImage imageB)
```
  - setHyperStack
```
public void setHyperStack(VolumeImage[] images,
                          WildMagic.LibGraphics.Rendering.Texture colormap)
```
  - setImageOn
```
public void setImageOn(int which,
                       boolean on)
```
  - setImageNew
```
public void setImageNew(java.lang.String kSurfaceName,
                        ModelImage kImage)
```
    Sets the ModelImage to use as an alternative to the volume ModelImage for surface texturing.
    
    Parameters:
    
    kSurfaceName - the surface to modify.
    
    kImage - the alternate ModelImage to use for the surface texture.
  - setIntenstityLevel
```
public void setIntenstityLevel(int iLevel)
```
    Set intensity level for GPU-based surface extraction.
    
    Parameters:
    
    iLevel -
  - setIPD
```
public void setIPD(float fIPD)
```
    Sets the inter-pupillary distance for stereo rendering.
    
    Parameters:
    
    fIPD - the IPD value.
  - setLUTNew
```
public void setLUTNew(java.lang.String kSurfaceName,
                      ModelStorageBase kLUT)
```
    Sets the LUT to use as an alternative to the volume lut for surface texturing.
    
    Parameters:
    
    kSurfaceName - the surface to modify.
    
    kLUT - the new LUT.
    
    kRGBT - the new ModelRGB (for color images).
  - setMaterial
```
public void setMaterial(java.lang.String kSurfaceName,
                        WildMagic.LibGraphics.Rendering.MaterialState kMaterial,
                        boolean bUpdate)
```
    Sets the material for the given surface.
    
    Parameters:
    
    kSurfaceName - the surface to update.
    
    kMaterial - the new material.
  - setPickable
```
public void setPickable(java.lang.String kSurfaceName,
                        boolean bOn)
```
    Enable surface picking for the given surface.
    
    Parameters:
    
    kSurfaceName - surface name.
    
    bOn - picking on/off.
  - setPolygonMode
```
public void setPolygonMode(java.lang.String kSurfaceName,
                           WildMagic.LibGraphics.Rendering.WireframeState.FillMode eMode)
```
    Set the polygon mode (FILL, LINE, POINT) for the given surface.
    
    Parameters:
    
    kSurfaceName - the surface to modify.
    
    eMode - FILL, LINE, or POINT.
  - setPolylineColor
```
public void setPolylineColor(int iGroup,
                             WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the polyline color for the specified fiber bundle tract group.
    
    Parameters:
    
    iGroup - the fiber bundle group to set.
    
    kColor - the new polyline color for the specified fiber bundle tract group.
  - setRGBTA
```
public void setRGBTA(ModelRGB RGBT)
```
  - setRGBTB
```
public void setRGBTB(ModelRGB RGBT)
```
  - setSliceOpacity
```
public void setSliceOpacity(int i,
                            float fAlpha)
```
    Set the transparency value for the slice.
    
    Parameters:
    
    i - the slice to modify.
    
    fAlpha - the new transparency value.
  - setStereo
```
public void setStereo(int iWhich)
```
    Enable/disable stereo rendering.
    
    Parameters:
    
    bEnable -
  - setSurfaceTexture
```
public void setSurfaceTexture(java.lang.String kSurfaceName,
                              boolean bOn,
                              boolean bUseNewImage,
                              boolean bUseNewLUT)
```
    Turns on surface texture display for the given surface. The user can use a separate ModelImage and LUT than the one displayed in the volume renderer.
    
    Parameters:
    
    kSurfaceName - the name of the surface to texture.
    
    bOn - texture on/off.
    
    bUseNewImage - when false use the current ModelImage, when true the user specifies the model image.
    
    bUseNewLUT - when false use the current LUT, when true the user specifies the LUT.
  - setVolumeBlend
```
public void setVolumeBlend(float fBlend)
```
    Sets the blend factor for displaying the ray-cast volume with other objects in the scene.
    
    Parameters:
    
    fBlend - the blend factor for the ray-cast volume.
  - setVolumeColor
```
public void setVolumeColor(boolean flag)
```
  - setVolumeSamplesMouseDragged
```
public int setVolumeSamplesMouseDragged(float fSample)
```
    Set the sampling rate when the mouse is Dragged.
  - setVolumeSamplesMouseReleased
```
public int setVolumeSamplesMouseReleased(float fSample)
```
    Set the sampling rate when the mouse is released.
  - setMouseTranslationSpeed
```
public void setMouseTranslationSpeed(float translationSpeed)
```
    Set the mouse translation speed from the translation control slider
    
    Parameters:
    
    translationSpeed - mouse translation speed
    
    rotationSpeed - mouse rotation speed
  - setMouseRotationSpeed
```
public void setMouseRotationSpeed(float rotationSpeed)
```
    Set the mouse rotation speed from the rotation control slider
    
    Parameters:
    
    rotationSpeed - mouse rotation speed
  - setMouseZoomSpeed
```
public void setMouseZoomSpeed(float zoomSpeed)
```
    Set the mouse zoom speed from the zoom control slider
    
    Parameters:
    
    zoomSpeed - mouse zoom speed
  - showBoundingBox
```
public void showBoundingBox(int i,
                            boolean bShow)
```
    Turns on/off displaying the bounding box for the given plane.
    
    Parameters:
    
    i - the plane index (0-3) in file coordinates.
    
    bShow - when true, the bounding box is displayed.
  - showSlice
```
public void showSlice(int i,
                      boolean bShow)
```
    Turns on/off displaying the given plane.
    
    Parameters:
    
    i - the plane index (0-3) in file coordinates.
    
    bShow - when true, the plane is displayed.
  - smoothMesh
```
public void smoothMesh(java.lang.String kSurfaceName,
                       int iteration,
                       float alpha,
                       boolean volumeLimit,
                       float volumePercent)
```
    Smooth the given surface.
    
    Parameters:
    
    kSurfaceName - the name of the surface to smooth.
    
    iteration - smooth iterations.
    
    alpha - smooth factor.
    
    volumeLimit - whether to use a volume % change limit.
    
    volumePercent - the % volume change limiting factor
  - smoothThree
```
public void smoothThree(java.lang.String kSurfaceName,
                        int iteration,
                        float lambda,
                        float mu)
```
    Smooth the given surface.
    
    Parameters:
    
    kSurfaceName - the name of the surface to smooth.
    
    iteration - smooth iterations.
    
    lambda - smooth factor.
    
    mu - smooth factor.
  - smoothTwo
```
public void smoothTwo(java.lang.String kSurfaceName,
                      int iteration,
                      float fStiffness,
                      boolean volumeLimit,
                      float volumePercent)
```
    Smooth the given surface.
    
    Parameters:
    
    kSurfaceName - the name of the surface to smooth.
    
    iteration - smooth iterations.
    
    fStiffness - stiffness factor.
    
    volumeLimit - whether to use a volume % change limit.
    
    volumePercent - the % volume change limiting factor.
  - SURFASTMode
```
public void SURFASTMode()
```
    Display the volume in Surface mode.
  - SURMode
```
public void SURMode()
```
    Display the volume in Composite Surface mode.
  - toggleGeodesicPathDisplay
```
public void toggleGeodesicPathDisplay(java.lang.String kSurfaceName,
                                      int iWhich)
```
    Switches between different ways of displaying the geodesic path (Euclidean, Geodesic, or Mesh).
    
    Parameters:
    
    kSurfaceName - the surface the path is on.
    
    iWhich - the type of display.
  - translateSurface
```
public void translateSurface(java.lang.String kSurfaceName,
                             WildMagic.LibFoundation.Mathematics.Vector3f kTranslate)
```
    Changes the translation vector for the surface with the given name.
    
    Parameters:
    
    kSurfaceName - the surface to move.
    
    kTranslate - the new translation vector
  - undoSculpt
```
public void undoSculpt(boolean bAll)
```
    Undo applying the sculpt region to the volume.
  - updateData
```
public void updateData()
```
    Causes the VolumeShader to update the copy of the ModelImage on the GPU.
    
    Parameters:
    
    kImage - the new image.
  - updateLevWidgetState
```
public void updateLevWidgetState(java.util.Vector<ClassificationWidget> kLWS)
```
  - CopyShared
```
private void CopyShared()
```
    Called by the init() function. Creates and initialized the scene-graph.
    
    Parameters:
    
    arg0 - the GLCanvas
  - CreateRenderTarget
```
protected void CreateRenderTarget(com.jogamp.opengl.GLAutoDrawable kDrawable,
                                  int iWidth,
                                  int iHeight,
                                  boolean forceReload)
```
    Creates the three render-to-texture targets for rendering semi-transparent surfaces. Creates the screen-space polygon and OrderIndTransparencyEffect that display the final result. The first render target is for the solid objects. Second render target is for translucent objects. Third render target is for accumulating the count of translucent objects per-pixel.
    
    Parameters:
    
    arg0 -
    
    iWidth -
    
    iHeight -
  - CreateScene
```
protected void CreateScene()
```
    Called by the init() function. Creates and initialized the scene-graph.
  - reCreateScene
```
public void reCreateScene(VolumeImage image)
```
    Called by the init() function. Creates and initialized the scene-graph.
  - reCreateScene
```
public void reCreateScene(VolumeImage imageA,
                          VolumeImage imageB)
```
  - doClip
```
protected void doClip(boolean bEnable)
```
    Calculates the rotation for the arbitrary clip plane.
    
    Parameters:
    
    bEnable - arbitrary clip plane on/off.
  - getHistogramLUTTextureIndex
```
public static int getHistogramLUTTextureIndex(java.lang.String kCommand)
```
  - getHistogramLUTTexture
```
public static WildMagic.LibGraphics.Rendering.Texture getHistogramLUTTexture(int index,
                                                                             boolean bReverse)
```
  - initLUT
```
private void initLUT(WildMagic.LibGraphics.Rendering.Texture[] m_akLUTTexture,
                     ModelLUT kLUT,
                     int index)
```
  - loadShared
```
private void loadShared()
```
  - Render
```
protected void Render(com.jogamp.opengl.GLAutoDrawable kDraw)
```
    Render the display list objects without the raycast volume.
  - RenderSculpt
```
private void RenderSculpt()
```
    Render the sculpt image.
  - RenderWithTransparency
```
private void RenderWithTransparency(boolean bPreRender,
                                    WildMagic.LibFoundation.Mathematics.Vector2d[] sortedList)
```
    Rendering multiple translucent surfaces is accomplished with the following steps: 1. A FrameBuffer Object (FBO) is created with three render-to-texture targets, and a depth buffer. 2. The first render target is activated. Solid objects are rendered: writing color and depth information to the FBO target1. The color information displays the solid objects, the depth information enables the solid objects to properly occlude the translucent objects. 3. The second and third render targets are activated. Translucent objects are rendered: writing accumulated color and alpha to the second target and the number of overlapping surfaces per pixel to the third target. In this pass the depth buffer is read-only. 4. Rendering to the three texture targets is disabled. 5. A screen-space polygon is rendered, it reads the three textures generated in the previous pass. The first texture contains the color from the solid objects, the next two textures contain the color information and weighted-average for rendering the translucent textures.
    
    Parameters:
    
    bPreRender - when true rendering into the VolumeRayCast back-image texture for compositing with the VolumeRayCast rendering.
  - update4D
```
protected void update4D(boolean bForward)
```
  - update4DVOIs
```
protected void update4DVOIs(boolean bForward)
```
  - updateCenterOnDisplay
```
protected void updateCenterOnDisplay()
```
  - updateVOIs
```
protected void updateVOIs(VOIVector kVOIs)
```
  - deleteVOIs
```
public void deleteVOIs(VOIVector kVOIs)
```
  - Pick
```
protected void Pick()
```
    Picking. If a display list object has picking enabled, find the picked polygon based on the mouse position.
  - UpdateSceneRotation
```
protected void UpdateSceneRotation()
```
    Description copied from class: GPURenderBase
    
    Updates the displayed objects based on any user mouse rotation.
    
    Overrides:
    
    UpdateSceneRotation in class GPURenderBase
  - NormalKernel
```
void NormalKernel(float[] a,
                  float[] b,
                  int width,
                  int height,
                  int depth,
                  int color,
                  int numElements)
```
  - createContainer
```
private void createContainer(com.jogamp.opengl.awt.GLCanvas canvas)
```
    Creates the containing JPanel that will display this object. The JPanel contains a scroll pane with both horizontal and vertical scroll bars and a horizontal slider for changing where the slice plane intersects the volume in depth.
    
    Parameters:
    
    imageComponent -
  - stateChanged
```
public void stateChanged(javax.swing.event.ChangeEvent arg0)
```
    Specified by:
    
    stateChanged in interface javax.swing.event.ChangeListener
  - toggleNavigation
```
public void toggleNavigation(boolean _isNavigationEnabled)
```
    Toggle navigation fly-thru tracking mode
    
    Parameters:
    
    _isNavigationEnabled - is Navigation checkbox selected or not.
  - setPlaneConstant
```
public void setPlaneConstant(float constant)
```
    Set the VolumeRayCast front clipping plane constant
    
    Parameters:
    
    constant - front clipping plane constant
  - updateSphere
```
protected static void updateSphere(WildMagic.LibGraphics.SceneGraph.TriMesh sphere,
                                   float x,
                                   float y,
                                   float z,
                                   WildMagic.LibFoundation.Mathematics.ColorRGBA c)
```
  - applyClipFilter
```
protected void applyClipFilter(boolean clip)
```
  - setLatticeClip
```
public void setLatticeClip(boolean clip,
                           WildMagic.LibFoundation.Mathematics.Vector3f pos,
                           WildMagic.LibFoundation.Mathematics.Vector3f[] axes,
                           float[] extents)
```
  - clipAnnotations
```
protected boolean clipAnnotations(VOIWormAnnotation text)
```
  - addAnimationLattice
```
public void addAnimationLattice(VOIVector latticeAnim)
```
  - createSamplePlane
```
private void createSamplePlane(VOIBase box)
```
  - addSphereVOIs
```
public void addSphereVOIs(VOI annotations)
```
  - writeData
```
private void writeData(java.lang.String fileName)
```

Class VolumeTriPlanarRenderBase

Nested Class Summary

Field Summary

Fields inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Fields inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.renderer.WildMagic.GPURenderBase

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication3D

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.JavaApplication

Methods inherited from class WildMagic.LibApplications.OpenGLApplication.Application

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.event.KeyListener

Methods inherited from interface java.awt.event.MouseListener

Methods inherited from interface java.awt.event.MouseMotionListener

Field Detail

serialVersionUID

glp

caps

gl_width

gl_height

sharedRenderer

sharedDrawable

init

m_kSculptor

m_afArbEquation

m_afArbEquationInv

m_kArbitraryClip

m_kArbitraryClipInv

m_bArbClipOn

m_bDisplaySecond

m_kSlices

m_akSlicesColor

m_kVolumeRayCast

m_kVolumeClip

m_kDTIDisplay

m_kVolumeBox

m_kVolumeCube

m_bFirstRender

m_bFirstDisplay

m_bResetImages

m_bPaintEnabled

m_bPaint

m_bErase

m_bDropper

m_bPaintCan

m_kPaintColor

m_iBrushSize

m_bGeodesicEnabled

m_iStereo

m_bPickCorrespondence

m_bCrop

m_iExtractLevel

fSample_mouseReleased

fSample_mouseDragged

m_bPlay4D

m_bPlay4DVOIs

m_fAnimateRate

m_iAnimateCount

m_kFBO

m_spkPlaneEffect

m_pkPlane

m_pkScreenCamera

m_kShared

m_bUpdateCenterOnDisplay

m_kNewCenter

m_bDisplay

m_akSceneTarget

m_bWriteImage

ms_NumHistogramLUTs

ms_akLUTTexture

container

isNavigationEnabled

navigationBehavior

annotatePtsCounter

annotatePtsList

m_kNormalColorPathUnvisited

m_kFlyPathGraphCurve

isPathPlanningEnabled