Package gov.nih.mipav.view.renderer.WildMagic.WormUntwisting

Class VOIWormAnnotation

java.lang.Object

java.util.AbstractCollection<WildMagic.LibFoundation.Mathematics.Vector3f>

java.util.AbstractList<WildMagic.LibFoundation.Mathematics.Vector3f>

java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>

gov.nih.mipav.model.structures.VOIBase

gov.nih.mipav.model.structures.VOIText

gov.nih.mipav.view.renderer.WildMagic.WormUntwisting.VOIWormAnnotation

All Implemented Interfaces:

Serializable, Cloneable, Iterable<WildMagic.LibFoundation.Mathematics.Vector3f>, Collection<WildMagic.LibFoundation.Mathematics.Vector3f>, List<WildMagic.LibFoundation.Mathematics.Vector3f>, RandomAccess, SequencedCollection<WildMagic.LibFoundation.Mathematics.Vector3f>

public class VOIWormAnnotation
extends VOIText

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
private boolean	isCurveAnnotation
private boolean	isSeamCell
private int	latticeSegment
private float	minDistance
private float	minUntwistDistance
private WildMagic.LibFoundation.Mathematics.Vector3f	minUntwistPt
private boolean	modified
private boolean	retwist
private boolean	selected
private WildMagic.LibFoundation.Mathematics.Vector3f	selectionOffset
private static final long	serialVersionUID
private VOIContour[]	showSelected
private VOI	showSelectedVOI
private int	slice
private WildMagic.LibFoundation.Mathematics.Vector3f	untwistPt

Fields inherited from class gov.nih.mipav.model.structures.VOIBase

active, autoLabel, averagePt, cenMassPt, cenMassPtB, cenMassPtG, cenMassPtR, CIRCLE, closed, display, DOWN, fixed, gcPt, label, lastPoint, LEFT, LEFT_MIDDLE, LOWER_LEFT, LOWER_MIDDLE, LOWER_RIGHT, m_akImageMinMax, m_bQuickLUT, m_bReloadPoints, m_bSplit, m_bUpdateAverage, m_bUpdateBounds, m_bUpdateGeometricCenter, m_bUpdateMask, m_bUpdatePlane, m_iAnchorIndex, m_iPlane, m_iVOIType, m_kColor, m_kPositionSum, m_kVolumeVOI, nearBoundPoint, nearPoint, NOT_A_PLANE, NOT_A_POINT, numPixels, process, RIGHT, RIGHT_MIDDLE, SQUARE, UNKNOWN_SUBTYPE, UP, UPPER_LEFT, UPPER_MIDDLE, UPPER_RIGHT, voiGroup, volumeDisplayRange, XPLANE, YPLANE, ZPLANE

Fields inherited from class java.util.Vector

capacityIncrement, elementCount, elementData

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor	Description
VOIWormAnnotation()
VOIWormAnnotation(VOIText kVOI)
VOIWormAnnotation(VOIWormAnnotation kVOI)
VOIWormAnnotation(Vector<WildMagic.LibFoundation.Mathematics.Vector3f> kPositions)
VOIWormAnnotation(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)

Method Summary

Modifier and Type	Method	Description
VOIWormAnnotation	clone()
void	copy(VOIWormAnnotation kVOI)
void	display(boolean show)	Turns the display setting on/off for the VolumeVOI displayed in the volume renderer.
void	dispose()	Deletes local data members.
int	getLatticeSegment()
WildMagic.LibFoundation.Mathematics.Vector3f	getSelectionOffset()
int	getSlice()
WildMagic.LibFoundation.Mathematics.Vector3f	getUntwistTest()
WildMagic.LibFoundation.Mathematics.Vector3f	getUntwistTestNoBounds()
boolean	isCurveAnnotation()
boolean	isSeamCell()
boolean	isSelected()
private void	makeSelectionFrame(WildMagic.LibFoundation.Mathematics.Vector3f right, WildMagic.LibFoundation.Mathematics.Vector3f up, WildMagic.LibFoundation.Mathematics.Vector3f center, float diameter, VOIContour ellipse)	Generates the VOI that highlights which point (lattice or annotation) is currently selected by the user.
boolean	modified()
void	modified(boolean modified)
boolean	retwist()
void	retwist(boolean retwist)
void	setCurveAnnotation(boolean isCurve)
void	setLatticeSegment(int segment)
void	setSeamCell(boolean isSeam)
void	setSelected(boolean select)
void	setSelectionOffset(WildMagic.LibFoundation.Mathematics.Vector3f selection)
void	untwistTest(WildMagic.LibFoundation.Mathematics.Vector3f pt, float distance)
void	untwistTestNoBounds(WildMagic.LibFoundation.Mathematics.Vector3f pt, float distance)
void	updateSelected(ModelImage image)

Methods inherited from class gov.nih.mipav.model.structures.VOIText

exportPoint, getBackgroundColor, getColor, getColorString, getComments, getDisplay, getFontDescriptors, getFontName, getFontSize, getLocationString, getNote, getText, getTextFont, getTextWidth, moveVOIPoint, setBackgroundColor, setColor, setComments, setFontDescriptors, setFontName, setFontSize, setNote, setText, setTextFont, setTextWidth, setUseMarker, update, updateText, useMarker, xCor, yCor

Methods inherited from class gov.nih.mipav.model.structures.VOIBase

addElement, addElement, area, areaTwice, calcIntensity, calcIntensity, calcIntensityThreshold, calcRGBIntensity, calcRGBIntensity, calcRGBIntensityThreshold, contain, contains, contains, contains, createVolumeVOI, cycleActivePt, delete, deleteVolumeVOI, distanceToVOI, equals, exportArrays, exportArrays, fillVolume, findPositionAndCurvature, findPositionAndIntensity, findPositionAndIntensity, findVOIIndentations2D, getActivePt, getAllContourPoints, getAnchor, getAverage, getBounds, getBounds, getCenterOfMass, getCenterOfMass, getCenterOfMassB, getCenterOfMassG, getCenterOfMassR, getContourID, getDoGeometricCenterLabel, getGeometricCenter, getGeometricCenterA, getGroup, getImageBoundingBox, getLabel, getLastNumPixels, getLengthPtToPt, getLengthPtToPt, getLengthString, getMaskPositions, getName, getNearBoundPoint, getNearPoint, getNumVoxels, getPlane, getProcess, getSelectedPoint, getSubtype, getTotalLengthString, getType, getVolumeDisplayRange, getVolumeVOI, importArrays, importArrays, importPoints, isActive, isClosed, isFixed, isM_bUpdateBounds, isM_bUpdateGeometricCenter, isQuickLUT, isSplit, nearLine, nearLine, planeFit, reloadPoints, setActive, setAnchor, setClosed, setDoGeometricCenterLabel, setFixed, setGroup, setLabel, setMask, setMaskSlice, setNearBoundPoint, setNearPoint, setPlane, setProcess, setQuickLUT, setSelectedPoint, setSplit, setSubtype, setVOIIntensities, setVOIIntensities, setVolumeDisplayRange, slice, slice, transform, trimPoints, update, update

Methods inherited from class java.util.Vector

add, add, addAll, addAll, addElement, capacity, clear, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, firstElement, forEach, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, iterator, lastElement, lastIndexOf, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, removeIf, removeRange, replaceAll, retainAll, set, setElementAt, setSize, size, sort, spliterator, subList, toArray, toArray, toString, trimToSize

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

parallelStream, stream, toArray

Methods inherited from interface java.util.List

addFirst, addLast, getFirst, getLast, removeFirst, removeLast, reversed

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

retwist

private boolean retwist

modified

private boolean modified

latticeSegment

private int latticeSegment

slice

private int slice

selected

private boolean selected

showSelectedVOI

private VOI showSelectedVOI

showSelected

private VOIContour[] showSelected

selectionOffset

private WildMagic.LibFoundation.Mathematics.Vector3f selectionOffset

isCurveAnnotation

private boolean isCurveAnnotation

isSeamCell

private boolean isSeamCell

untwistPt

private WildMagic.LibFoundation.Mathematics.Vector3f untwistPt

minDistance

private float minDistance

minUntwistPt

private WildMagic.LibFoundation.Mathematics.Vector3f minUntwistPt

minUntwistDistance

private float minUntwistDistance

Constructor Details

VOIWormAnnotation

public VOIWormAnnotation()

VOIWormAnnotation

public VOIWormAnnotation(WildMagic.LibFoundation.Mathematics.Vector3f kPosition)

VOIWormAnnotation

public VOIWormAnnotation(Vector<WildMagic.LibFoundation.Mathematics.Vector3f> kPositions)

VOIWormAnnotation

public VOIWormAnnotation(VOIText kVOI)

VOIWormAnnotation

public VOIWormAnnotation(VOIWormAnnotation kVOI)

Method Details

copy

public void copy(VOIWormAnnotation kVOI)

clone

public VOIWormAnnotation clone()

Overrides:

clone in class VOIText

dispose

public void dispose()

Description copied from class: VOIBase

Deletes local data members.

Overrides:

dispose in class VOIBase

modified

public void modified(boolean modified)

modified

public boolean modified()

retwist

public void retwist(boolean retwist)

retwist

public boolean retwist()

getSlice

public int getSlice()

getLatticeSegment

public int getLatticeSegment()

setLatticeSegment

public void setLatticeSegment(int segment)

isSeamCell

public boolean isSeamCell()

setSeamCell

public void setSeamCell(boolean isSeam)

setCurveAnnotation

public void setCurveAnnotation(boolean isCurve)

isCurveAnnotation

public boolean isCurveAnnotation()

setSelected

public void setSelected(boolean select)

isSelected

public boolean isSelected()

setSelectionOffset

public void setSelectionOffset(WildMagic.LibFoundation.Mathematics.Vector3f selection)

getSelectionOffset

public WildMagic.LibFoundation.Mathematics.Vector3f getSelectionOffset()

untwistTest

public void untwistTest(WildMagic.LibFoundation.Mathematics.Vector3f pt,
 float distance)

getUntwistTest

public WildMagic.LibFoundation.Mathematics.Vector3f getUntwistTest()

untwistTestNoBounds

public void untwistTestNoBounds(WildMagic.LibFoundation.Mathematics.Vector3f pt,
 float distance)

getUntwistTestNoBounds

public WildMagic.LibFoundation.Mathematics.Vector3f getUntwistTestNoBounds()

updateSelected

public void updateSelected(ModelImage image)

display

public void display(boolean show)

Turns the display setting on/off for the VolumeVOI displayed in the volume renderer.

Overrides:

display in class VOIBase

Parameters:

show -

makeSelectionFrame

private void makeSelectionFrame(WildMagic.LibFoundation.Mathematics.Vector3f right,
 WildMagic.LibFoundation.Mathematics.Vector3f up,
 WildMagic.LibFoundation.Mathematics.Vector3f center,
 float diameter,
 VOIContour ellipse)

Generates the VOI that highlights which point (lattice or annotation) is currently selected by the user.

Parameters:

right -

up -

center -

diameter -

ellipse -