Package gov.nih.mipav.view.dialogs

Class JDialogExtractSlicesVolumes

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogExtractSlicesVolumes
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogExtractSlicesVolumes extends JDialogScriptableBase implements AlgorithmInterface
Creates the dialog to remove separate slices in an image. Dialog asks which slices the user wishes to remove; note that in 4D since the slices are removed for a constant z value but different time values no volumes are removed. it provides buttons to mark all slices for removal and to de-select any slices from image removal; it gives options to remove or to cancel. Allows 3D or 4D images; 2D images would not make sense with this operation.**(as of 25 Oct, does not yet rename removed slice image when saving)**(as of 1 November, does not yet process the more complicated DICOM images completely.
Version:
v0.12 1 Nov 1999 (processes most images)
Author:
David Parsons (parsonsd@cbel.cit.nih.gov) (with vast help from M.McAuliffe)
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      Use serialVersionUID for interoperability.
      See Also:

    • checkboxList

      private JCheckBox[] checkboxList
      DOCUMENT ME!

    • checkboxPanel

      private JPanel checkboxPanel
      DOCUMENT ME!

    • checkButton

      private JButton checkButton
      DOCUMENT ME!

    • checkEvenButton

      private JButton checkEvenButton
      DOCUMENT ME!

    • checkListExtract

      private boolean[] checkListExtract
      DOCUMENT ME!

    • checkOddButton

      private JButton checkOddButton
      DOCUMENT ME!

    • exampleLabel

      private JLabel exampleLabel
      DOCUMENT ME!

    • exampleLabel2

      private JLabel exampleLabel2
      DOCUMENT ME!

    • extractedImages

      private ModelImage[] extractedImages
      DOCUMENT ME!

    • extractSlicesAlgo

      private AlgorithmExtractSlicesVolumes extractSlicesAlgo
      DOCUMENT ME!

    • nSlices

      private int nSlices
      DOCUMENT ME!

    • numChecked

      private int numChecked
      DOCUMENT ME!

    • rangeField

      private JTextField rangeField
      DOCUMENT ME!

    • scrollPane

      private JScrollPane scrollPane
      DOCUMENT ME!

    • srcImage

      private ModelImage srcImage
      DOCUMENT ME!

    • unCheckButton

      private JButton unCheckButton
      DOCUMENT ME!

    • useRange

      private JCheckBox useRange
      DOCUMENT ME!

  • Constructor Details

    • JDialogExtractSlicesVolumes

      public JDialogExtractSlicesVolumes()
      Empty constructor needed for dynamic instantiation (used during scripting).

    • JDialogExtractSlicesVolumes

      public JDialogExtractSlicesVolumes(Frame theParentFrame, ModelImage im)
      Creates new dialog for removing slices.
      Parameters:
      theParentFrame - Parent frame
      im - Source image

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • itemStateChanged

      public void itemStateChanged(ItemEvent event)
      Unchanged.
      Specified by:
      itemStateChanged in interface ItemListener
      Overrides:
      itemStateChanged in class JDialogBase
      Parameters:
      event - DOCUMENT ME!

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call the Remove Slices algorithm based on what type of image this is and whether or not there is a separate destination image.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • getSliceRangeString

      private static String getSliceRangeString(boolean[] extractList)
      Converts from a boolean array marking which slices should be extracted to a (more compact) range string indicating which slices should be extracted.
      Parameters:
      extractList - The boolean array indicating slices to extract.
      Returns:
      A range string of comma-separated slice numbers (0-based) and/or slice ranges; ex. '0-4,5,7,10,25-31'.

    • parseRangeString

      private static boolean[] parseRangeString(int numSlices, String rangeStr)
      Extract the slices that should be extracted from a range string.
      Parameters:
      numSlices - The number of slices in the image being processed.
      rangeStr - The range string to parse; ex. '1-10,13,20-32'.
      Returns:
      An array of booleans for every slice in the image, where true indicates a slice that should be extracted.

    • init

      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.