Package gov.nih.mipav.view.dialogs
Class JDialogLocalVariance
- java.lang.Object
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- java.awt.Component
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- java.awt.Container
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- java.awt.Window
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- java.awt.Dialog
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- javax.swing.JDialog
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- gov.nih.mipav.view.dialogs.JDialogBase
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- gov.nih.mipav.view.dialogs.JDialogScriptableBase
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- gov.nih.mipav.view.dialogs.JDialogLocalVariance
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- All Implemented Interfaces:
AlgorithmInterface
,ScriptableActionInterface
,DialogDefaultsInterface
,ActionDiscovery
,java.awt.event.ActionListener
,java.awt.event.FocusListener
,java.awt.event.ItemListener
,java.awt.event.WindowListener
,java.awt.image.ImageObserver
,java.awt.MenuContainer
,java.io.Serializable
,java.util.EventListener
,javax.accessibility.Accessible
,javax.swing.RootPaneContainer
,javax.swing.WindowConstants
public class JDialogLocalVariance extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
Dialog to get user input, then call the algorithm. The user has the option to generate a new image or replace the source image. In addition the user can select having the algorithm applied to whole image or to the VOI regions. It should be noted that the algorithms are executed in their own thread.- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
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Nested classes/interfaces inherited from class javax.swing.JDialog
javax.swing.JDialog.AccessibleJDialog
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Nested classes/interfaces inherited from class java.awt.Dialog
java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
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Nested classes/interfaces inherited from class java.awt.Window
java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
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Field Summary
Fields Modifier and Type Field Description private javax.swing.JRadioButton
bySlice
DOCUMENT ME!private javax.swing.JComboBox
comboBoxKernelSize
DOCUMENT ME!private ModelImage
image
DOCUMENT ME!private boolean
image25D
false = apply algorithm only to VOI regions.private int
kernelSize
DOCUMENT ME!private JPanelAlgorithmOutputOptions
outputPanel
DOCUMENT ME!private ModelImage
resultImage
DOCUMENT ME!private java.lang.String[]
titles
DOCUMENT ME!private ViewUserInterface
userInterface
DOCUMENT ME!private AlgorithmLocalVariance
varAlgo
DOCUMENT ME!private javax.swing.JRadioButton
wholeVolume
DOCUMENT ME!-
Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters
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Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager
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Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled
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Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
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Constructor Summary
Constructors Constructor Description JDialogLocalVariance()
Empty constructor needed for dynamic instantiation (used during scripting).JDialogLocalVariance(java.awt.Frame theParentFrame, ModelImage im)
Creates a new JDialogLocalVariance object.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.void
algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented.private void
buildKernelSizeComboBox(boolean singleSlices)
Creates the combo-box that allows user to select the size of the kernel (mask).protected void
callAlgorithm()
Once all the necessary variables are set, call the local variance algorithm based on what type of image this is and whether or not there is a separate destination image.ParameterTable
createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).ParameterTable
createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).private void
determineKernelSize()
Associate one side of the kernel size with selectBox choice.protected void
doPostAlgorithmActions()
Store the result image in the script runner's image table now that the action execution is finished.ActionMetadata
getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.java.lang.String
getOutputImageName(java.lang.String imageParamName)
Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).ModelImage
getResultImage()
Accessor that returns the image.private void
init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.boolean
isActionComplete()
Returns whether the action has successfully completed its execution.protected void
setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.void
setImage25D(boolean flag)
Accessor that sets the slicing flag.void
setKernelSize(int size)
Accessor that sets the kernel size.private boolean
setVariables()
Use the GUI results to set up the variables needed to run the algorithm.protected void
storeParamsFromGUI()
Record the parameters just used to run this algorithm in a script.-
Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete
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Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
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Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
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Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack
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Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
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Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
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Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun
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Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun
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Field Detail
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bySlice
private javax.swing.JRadioButton bySlice
DOCUMENT ME!
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comboBoxKernelSize
private javax.swing.JComboBox comboBoxKernelSize
DOCUMENT ME!
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image
private ModelImage image
DOCUMENT ME!
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image25D
private boolean image25D
false = apply algorithm only to VOI regions.
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kernelSize
private int kernelSize
DOCUMENT ME!
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varAlgo
private AlgorithmLocalVariance varAlgo
DOCUMENT ME!
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outputPanel
private JPanelAlgorithmOutputOptions outputPanel
DOCUMENT ME!
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resultImage
private ModelImage resultImage
DOCUMENT ME!
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titles
private java.lang.String[] titles
DOCUMENT ME!
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userInterface
private ViewUserInterface userInterface
DOCUMENT ME!
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wholeVolume
private javax.swing.JRadioButton wholeVolume
DOCUMENT ME!
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Constructor Detail
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JDialogLocalVariance
public JDialogLocalVariance()
Empty constructor needed for dynamic instantiation (used during scripting).
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JDialogLocalVariance
public JDialogLocalVariance(java.awt.Frame theParentFrame, ModelImage im)
Creates a new JDialogLocalVariance object.- Parameters:
theParentFrame
- Parent frame.im
- Source image.
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Method Detail
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actionPerformed
public void actionPerformed(java.awt.event.ActionEvent event)
Closes dialog box when the OK button is pressed and calls the algorithm.- Specified by:
actionPerformed
in interfacejava.awt.event.ActionListener
- Overrides:
actionPerformed
in classJDialogBase
- Parameters:
event
- Event that triggers function.
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algorithmPerformed
public void algorithmPerformed(AlgorithmBase algorithm)
This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.- Specified by:
algorithmPerformed
in interfaceAlgorithmInterface
- Parameters:
algorithm
- Algorithm that caused the event.
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getResultImage
public ModelImage getResultImage()
Accessor that returns the image.- Returns:
- The result image.
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setImage25D
public void setImage25D(boolean flag)
Accessor that sets the slicing flag.- Parameters:
flag
-true
indicates slices should be processed independently.
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setKernelSize
public void setKernelSize(int size)
Accessor that sets the kernel size.- Parameters:
size
- Value to set size to (3 == 3x3, 5 == 5x5, etc.)
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callAlgorithm
protected void callAlgorithm()
Once all the necessary variables are set, call the local variance algorithm based on what type of image this is and whether or not there is a separate destination image.- Specified by:
callAlgorithm
in classJDialogScriptableBase
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doPostAlgorithmActions
protected void doPostAlgorithmActions()
Store the result image in the script runner's image table now that the action execution is finished.- Overrides:
doPostAlgorithmActions
in classJDialogScriptableBase
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setGUIFromParams
protected void setGUIFromParams()
Set the dialog GUI using the script parameters while running this algorithm as part of a script.- Specified by:
setGUIFromParams
in classJDialogScriptableBase
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storeParamsFromGUI
protected void storeParamsFromGUI() throws ParserException
Record the parameters just used to run this algorithm in a script.- Specified by:
storeParamsFromGUI
in classJDialogScriptableBase
- Throws:
ParserException
- If there is a problem creating/recording the new parameters.
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buildKernelSizeComboBox
private void buildKernelSizeComboBox(boolean singleSlices)
Creates the combo-box that allows user to select the size of the kernel (mask).- Parameters:
singleSlices
- DOCUMENT ME!
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determineKernelSize
private void determineKernelSize()
Associate one side of the kernel size with selectBox choice.
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init
private void init()
Sets up the GUI (panels, buttons, etc) and displays it on the screen.
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setVariables
private boolean setVariables()
Use the GUI results to set up the variables needed to run the algorithm.- Returns:
true
if parameters set successfully,false
otherwise.
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getActionMetadata
public ActionMetadata getActionMetadata()
Return meta-information about this discoverable action for categorization and labeling purposes.- Specified by:
getActionMetadata
in interfaceActionDiscovery
- Returns:
- Metadata for this action.
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createInputParameters
public ParameterTable createInputParameters()
Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used insetGUIFromParams()
).- Specified by:
createInputParameters
in interfaceActionDiscovery
- Returns:
- A parameter table listing the inputs of this algorithm.
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createOutputParameters
public ParameterTable createOutputParameters()
Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).- Specified by:
createOutputParameters
in interfaceActionDiscovery
- Returns:
- A parameter table listing the outputs of this algorithm.
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getOutputImageName
public java.lang.String getOutputImageName(java.lang.String imageParamName)
Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).- Specified by:
getOutputImageName
in interfaceActionDiscovery
- Parameters:
imageParamName
- The output image parameter label for which to get the image name.- Returns:
- The image name of the requested output image parameter label.
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isActionComplete
public boolean isActionComplete()
Returns whether the action has successfully completed its execution.- Specified by:
isActionComplete
in interfaceActionDiscovery
- Returns:
- True, if the action is complete. False, if the action failed or is still running.
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