Package gov.nih.mipav.view.renderer.WildMagic.Interface

Class FileInfoSurfaceGiftiXML_WM

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoXML

gov.nih.mipav.model.file.FileInfoSurfaceRefXML

gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

All Implemented Interfaces:

Serializable, Cloneable

public class FileInfoSurfaceGiftiXML_WM
extends FileInfoSurfaceRefXML

This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.

See Also:

• FileIO
• FileInfoXML
• FileSurfaceXML
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private Vector<Integer>	connectivity	Vector to hold the connection index.
private Vector<WildMagic.LibFoundation.Mathematics.Vector3f>	coordinates	Vector to hold the 3D coordinate positions
private WildMagic.LibGraphics.Rendering.MaterialState	m_kMaterial	Material properties of the surface:.
private static final long	serialVersionUID

Fields inherited from class gov.nih.mipav.model.file.FileInfoXML

imageDataFileName, imageDescription

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoSurfaceGiftiXML_WM(String name, String directory, int format)	Main constructor for FileInfoSurfaceXML.

Method Summary

Modifier and Type	Method	Description
void	finalize()	Prepares the class for cleanup.
Vector<Integer>	getConnectivity()	Get the connectivity vector.
Vector<WildMagic.LibFoundation.Mathematics.Vector3f>	getCoordinate()	Get the coordinate vector.
WildMagic.LibGraphics.Rendering.MaterialState	getMaterial()	Returns the material properties for the surface:.
void	setAmbient(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)	Sets the ambient color of the surface:.
void	setConnectivity(Vector<Integer> conn)	Set the default connectivity vector.
void	setCoordinate(Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coords)	Set the default coordinate vector.
void	setDiffuse(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)	Sets the diffuse color of the surface:.
void	setEmissive(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)	Sets the emissive color of the surface:.
void	setMaterial(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)	Sets the material properties for the surface:.
void	setShininess(float fShininess)	Sets the surface shininess:.
void	setSpecular(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)	Sets the specular color of the surface:.
void	updateFileInfos(FileInfoXML fInfo)	Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

Methods inherited from class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

displayAboutInfo, getID, getLevelDetail, getOpacity, getSurfaceFileName, getType, setID, setLevelDetail, setOpacity, setSurfaceFileName, setType

Methods inherited from class gov.nih.mipav.model.file.FileInfoXML

appendImageDescription, getImageDataFileName, getImageDescription, setImageDataFileName, setImageDescription

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

serialVersionUID

private static final long serialVersionUID

See Also:

• Constant Field Values

m_kMaterial

private WildMagic.LibGraphics.Rendering.MaterialState m_kMaterial

Material properties of the surface:.

coordinates

private Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordinates

Vector to hold the 3D coordinate positions

connectivity

private Vector<Integer> connectivity

Vector to hold the connection index.

Constructor Details

FileInfoSurfaceGiftiXML_WM

public FileInfoSurfaceGiftiXML_WM(String name,
 String directory,
 int format)

Main constructor for FileInfoSurfaceXML.

Parameters:

name - String file name

directory - String file directory

format - int file format (data type)

Method Details

setCoordinate

public void setCoordinate(Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coords)

Set the default coordinate vector.

setConnectivity

public void setConnectivity(Vector<Integer> conn)

Set the default connectivity vector.

Parameters:

conn -

getCoordinate

public Vector<WildMagic.LibFoundation.Mathematics.Vector3f> getCoordinate()

Get the coordinate vector.

Returns:

coordinate

getConnectivity

public Vector<Integer> getConnectivity()

Get the connectivity vector.

Returns:

connectivity.

finalize

public void finalize()

Prepares the class for cleanup.

Overrides:

finalize in class FileInfoSurfaceRefXML

getMaterial

public WildMagic.LibGraphics.Rendering.MaterialState getMaterial()

Returns the material properties for the surface:.

Returns:

material properties for the surface.

setAmbient

public void setAmbient(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)

Sets the ambient color of the surface:.

Parameters:

kColor - the ambient color of the surface.

setDiffuse

public void setDiffuse(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)

Sets the diffuse color of the surface:.

Parameters:

kColor - the diffuse color of the surface.

setEmissive

public void setEmissive(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)

Sets the emissive color of the surface:.

Parameters:

kColor - the emissive color of the surface.

setMaterial

public void setMaterial(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)

Sets the material properties for the surface:.

Parameters:

kMaterial - material properties for the surface.

setShininess

public void setShininess(float fShininess)

Sets the surface shininess:.

Parameters:

fShininess - surface shininess.

setSpecular

public void setSpecular(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)

Sets the specular color of the surface:.

Parameters:

kColor - specular color of the surface.

updateFileInfos

public void updateFileInfos(FileInfoXML fInfo)

Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

Overrides:

updateFileInfos in class FileInfoSurfaceRefXML

Parameters:

fInfo - FileInfoSurfaceRefXML file info to be copied into