java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.file.FileInfoBase
  - - gov.nih.mipav.model.file.FileInfoXML
    - - gov.nih.mipav.model.file.FileInfoSurfaceRefXML
      - gov.nih.mipav.view.renderer.WildMagic.Interface.FileInfoSurfaceGiftiXML_WM

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class FileInfoSurfaceGiftiXML_WM
extends FileInfoSurfaceRefXML
```
This structure contains the information that describes how an XML surface (see surface.xsd and FileSurfaceXML.java) is stored on disk.

See Also:

FileIO, FileInfoXML, FileSurfaceXML, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase
  FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields
Modifier and Type	Field	Description
`private java.util.Vector<java.lang.Integer>`	`connectivity`	Vector to hold the connection index.
`private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`coordinates`	Vector to hold the 3D coordinate positions
`private WildMagic.LibGraphics.Rendering.MaterialState`	`m_kMaterial`	Material properties of the surface:.
`private static long`	`serialVersionUID`

Fields inherited from class gov.nih.mipav.model.file.FileInfoXML
imageDataFileName, imageDescription

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase
ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors
Constructor	Description
`FileInfoSurfaceGiftiXML_WM(java.lang.String name, java.lang.String directory, int format)`	Main constructor for FileInfoSurfaceXML.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares the class for cleanup.
`java.util.Vector<java.lang.Integer>`	`getConnectivity()`	Get the connectivity vector.
`java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f>`	`getCoordinate()`	Get the coordinate vector.
`WildMagic.LibGraphics.Rendering.MaterialState`	`getMaterial()`	Returns the material properties for the surface:.
`void`	`setAmbient(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the ambient color of the surface:.
`void`	`setConnectivity(java.util.Vector<java.lang.Integer> conn)`	Set the default connectivity vector.
`void`	`setCoordinate(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coords)`	Set the default coordinate vector.
`void`	`setDiffuse(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the diffuse color of the surface:.
`void`	`setEmissive(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the emissive color of the surface:.
`void`	`setMaterial(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)`	Sets the material properties for the surface:.
`void`	`setShininess(float fShininess)`	Sets the surface shininess:.
`void`	`setSpecular(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)`	Sets the specular color of the surface:.
`void`	`updateFileInfos(FileInfoXML fInfo)`	Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.

Methods inherited from class gov.nih.mipav.model.file.FileInfoSurfaceRefXML
displayAboutInfo, getID, getLevelDetail, getOpacity, getSurfaceFileName, getType, setID, setLevelDetail, setOpacity, setSurfaceFileName, setType

Methods inherited from class gov.nih.mipav.model.file.FileInfoXML
appendImageDescription, getImageDataFileName, getImageDescription, setImageDataFileName, setImageDescription

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase
copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
clone, nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    See Also:
    
    Constant Field Values
  - m_kMaterial
```
private WildMagic.LibGraphics.Rendering.MaterialState m_kMaterial
```
    Material properties of the surface:.
  - coordinates
```
private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coordinates
```
    Vector to hold the 3D coordinate positions
  - connectivity
```
private java.util.Vector<java.lang.Integer> connectivity
```
    Vector to hold the connection index.
- Constructor Detail
  - FileInfoSurfaceGiftiXML_WM
```
public FileInfoSurfaceGiftiXML_WM(java.lang.String name,
                                  java.lang.String directory,
                                  int format)
```
    Main constructor for FileInfoSurfaceXML.
    
    Parameters:
    
    name - String file name
    
    directory - String file directory
    
    format - int file format (data type)
- Method Detail
  - setCoordinate
```
public void setCoordinate(java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> coords)
```
    Set the default coordinate vector.
  - setConnectivity
```
public void setConnectivity(java.util.Vector<java.lang.Integer> conn)
```
    Set the default connectivity vector.
    
    Parameters:
    
    conn -
  - getCoordinate
```
public java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> getCoordinate()
```
    Get the coordinate vector.
    
    Returns:
    
    coordinate
  - getConnectivity
```
public java.util.Vector<java.lang.Integer> getConnectivity()
```
    Get the connectivity vector.
    
    Returns:
    
    connectivity.
  - finalize
```
public void finalize()
```
    Prepares the class for cleanup.
    
    Overrides:
    
    finalize in class FileInfoSurfaceRefXML
  - getMaterial
```
public WildMagic.LibGraphics.Rendering.MaterialState getMaterial()
```
    Returns the material properties for the surface:.
    
    Returns:
    
    material properties for the surface.
  - setAmbient
```
public void setAmbient(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the ambient color of the surface:.
    
    Parameters:
    
    kColor - the ambient color of the surface.
  - setDiffuse
```
public void setDiffuse(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the diffuse color of the surface:.
    
    Parameters:
    
    kColor - the diffuse color of the surface.
  - setEmissive
```
public void setEmissive(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the emissive color of the surface:.
    
    Parameters:
    
    kColor - the emissive color of the surface.
  - setMaterial
```
public void setMaterial(WildMagic.LibGraphics.Rendering.MaterialState kMaterial)
```
    Sets the material properties for the surface:.
    
    Parameters:
    
    kMaterial - material properties for the surface.
  - setShininess
```
public void setShininess(float fShininess)
```
    Sets the surface shininess:.
    
    Parameters:
    
    fShininess - surface shininess.
  - setSpecular
```
public void setSpecular(WildMagic.LibFoundation.Mathematics.ColorRGB kColor)
```
    Sets the specular color of the surface:.
    
    Parameters:
    
    kColor - specular color of the surface.
  - updateFileInfos
```
public void updateFileInfos(FileInfoXML fInfo)
```
    Used to propagate all FileInfoSurfaceRefXML private variables to other FileInfosSurfaceRefXML.
    
    Overrides:
    
    updateFileInfos in class FileInfoSurfaceRefXML
    
    Parameters:
    
    fInfo - FileInfoSurfaceRefXML file info to be copied into

Class FileInfoSurfaceGiftiXML_WM

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileInfoXML

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileInfoSurfaceRefXML

Methods inherited from class gov.nih.mipav.model.file.FileInfoXML

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

m_kMaterial

coordinates

connectivity

Constructor Detail

FileInfoSurfaceGiftiXML_WM

Method Detail

setCoordinate

setConnectivity

getCoordinate

getConnectivity

finalize

getMaterial

setAmbient

setDiffuse

setEmissive

setMaterial

setShininess

setSpecular

updateFileInfos