Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmConvert3Dto4D

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmConvert3Dto4D

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmConvert3Dto4D
extends AlgorithmBase

Converts a 3D dataset that is really a 4D dataset into a 4D dataset.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private float	resol3	resolution of the 3rd dimension.
private float	resol4	resolution of the 4rd dimension.
private int	resolUnit3	units of measure for the 3rd dimension.
private int	resolUnit4	units of measure for the 4th dimension.
private int	volumeLength	number of slices in the 3rd dimension. 4th dim length = sourceImage.3rd_dim / volumeLength

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmConvert3Dto4D(ModelImage srcImg, int volumeLength, float res3, float res4, int unit3, int unit4)	Constructs new algorithm and sets source.

Method Summary

Modifier and Type	Method	Description
private void	convert3Dto4D()	Converts a 3D dataset that is really a 4D dataset into a 4D dataset.
void	finalize()	Prepares this class for destruction.
ModelImage	getResultImage()	Returns result image.
void	runAlgorithm()	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

resol3

private float resol3

resolution of the 3rd dimension.

resol4

private float resol4

resolution of the 4rd dimension.

resolUnit3

private int resolUnit3

units of measure for the 3rd dimension.

resolUnit4

private int resolUnit4

units of measure for the 4th dimension.

volumeLength

private int volumeLength

number of slices in the 3rd dimension. 4th dim length = sourceImage.3rd_dim / volumeLength

Constructor Details

AlgorithmConvert3Dto4D

public AlgorithmConvert3Dto4D(ModelImage srcImg,
 int volumeLength,
 float res3,
 float res4,
 int unit3,
 int unit4)

Constructs new algorithm and sets source.

Parameters:

srcImg - source image model

volumeLength - the 3D image will be chopped upto to volumes of this length volumeLength should divide evenly (without remainder) into the 3rd dimension length of the original image.

res3 - resolution of the 3rd dimension

res4 - resolution of the 4rd dimension

unit3 - units of measure for the 3rd dimension

unit4 - units of measure for the 4rd dimension

copyAllInfo - whether all file information is copied

Method Details

finalize

public void finalize()

Prepares this class for destruction.

Overrides:

finalize in class AlgorithmBase

getResultImage

public ModelImage getResultImage()

Returns result image.

Returns:

destImage

runAlgorithm

public void runAlgorithm()

Starts the program.

Specified by:

runAlgorithm in class AlgorithmBase

convert3Dto4D

private void convert3Dto4D()

Converts a 3D dataset that is really a 4D dataset into a 4D dataset.