java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogConstrainedOAR3D

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogConstrainedOAR3D
extends JDialogScriptableBase
implements AlgorithmInterface
```
Dialog to get user input, then call algorithm RegistrationOAR3D. The user must designate a reference image, a type of cost function, the degrees of freedom used in the registration, and the range and rate of the coarse and fine samples. These are set to defaults most likely to give a fast and accurate registration. The user may also select weighted images to discount parts of the reference and input images in the registration. These must be the same size as their respective originals - i.e., the reference weight image must be the same size as the reference image. The user can select to display the registered image. Regardless of whether this is selected, the matrix will be stored in a file in the user's working directory and also in the original image's transformation matrix.

Author:

Neva Cherniavsky

See Also:

AlgorithmCostFunctions, AlgorithmConstrainedOAR3D, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private javax.swing.JDialog`	`advancedDialog`	Variables for Advanced Settings dialog.
`private int`	`bracketBound`	DOCUMENT ME!
`private int`	`bracketBound_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`bracketBoundText`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonWeightInput`	DOCUMENT ME!
`private javax.swing.JButton`	`buttonWeightRef`	DOCUMENT ME!
`private boolean`	`calcCOG`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`calcCOGCheckbox`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelX`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelY`	DOCUMENT ME!
`private javax.swing.JPanel`	`coarsePanelZ`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxCostFunct`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxDOF`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxImage`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxInterp`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxInterp2`	DOCUMENT ME!
`private javax.swing.JComboBox`	`comboBoxSearchAlgo`
`private int`	`cost`	DOCUMENT ME!
`private java.lang.String`	`costName`	DOCUMENT ME!
`private int`	`dataType`
`private java.lang.String`	`directoryWInput`	DOCUMENT ME!
`private java.lang.String`	`directoryWRef`	DOCUMENT ME!
`private boolean`	`displayTransform`	DOCUMENT ME!
`private boolean`	`doColor`	DOCUMENT ME!
`private int`	`DOF`	DOCUMENT ME!
`private boolean`	`doSubsample`	DOCUMENT ME!
`private boolean`	`fastMode`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`fastModeCheckbox`	DOCUMENT ME!
`private java.lang.String`	`fileNameWInput`	DOCUMENT ME!
`private java.lang.String`	`fileNameWRef`	DOCUMENT ME!
`private float`	`fillValue`
`private java.awt.GridBagConstraints`	`gbc`	DOCUMENT ME!
`private double`	`imageMax`
`private double`	`imageMin`
`private ModelImage`	`inputWeightImage`	DOCUMENT ME!
`private int`	`interp`	DOCUMENT ME!
`private int`	`interp2`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelInterp2`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelTranslateRangeX`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelTranslateRangeY`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelTranslateRangeZ`	DOCUMENT ME!
`private boolean`	`limitTranslation`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`limitTranslationCheckbox`	DOCUMENT ME!
`private ModelImage`	`matchImage`	DOCUMENT ME!
`private javax.swing.JComboBox`	`matrixComboBox`
`private java.lang.String`	`matrixDirectory`
`private javax.swing.JLabel`	`matrixLabel`
`private int`	`maxIterations`	DOCUMENT ME!
`private int`	`maxIterations_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`maxIterationsText`	DOCUMENT ME!
`private float[][]`	`maxLimits`	when done debugging: private boolean limitTranslation = false, oneTransLimit = false;.
`private boolean`	`maxOfMinResol`	DOCUMENT ME!
`private javax.swing.JTextField`	`maxTransTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`maxTransTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`maxTransTextZ`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`minMaxCheckbox`	DOCUMENT ME!
`private javax.swing.JTextField`	`minTransTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`minTransTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`minTransTextZ`	DOCUMENT ME!
`private javax.swing.JLabel`	`mmLabelX`	DOCUMENT ME!
`private javax.swing.JLabel`	`mmLabelY`	DOCUMENT ME!
`private javax.swing.JLabel`	`mmLabelZ`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`noneRadio`	DOCUMENT ME!
`private javax.swing.JTextField`	`numberCoarseTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`numberCoarseTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`numberCoarseTextZ`	DOCUMENT ME!
`private int`	`numCoarseX`	DOCUMENT ME!
`private int`	`numCoarseY`	DOCUMENT ME!
`private int`	`numCoarseZ`	DOCUMENT ME!
`private int`	`numMinima`	DOCUMENT ME!
`private int`	`numMinima_def`	DOCUMENT ME!
`private javax.swing.JTextField`	`numMinText`	DOCUMENT ME!
`private boolean`	`oneTransLimit`	DOCUMENT ME!
`private javax.swing.JComboBox`	`outOfBoundsComboBox`
`private int`	`outOfBoundsIndex`	Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
`private javax.swing.JLabel`	`outOfBoundsLabel`
`private ModelImage`	`refImage`	DOCUMENT ME!
`private ModelImage`	`refWeightImage`	DOCUMENT ME!
`private AlgorithmConstrainedOAR3D`	`reg3`
`private AlgorithmConstrainedELSUNCOAR3D`	`reg3E`	DOCUMENT ME!
`private ModelImage`	`resultImage`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateBeginTextZ`	DOCUMENT ME!
`private float`	`rotateBeginX`	private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
`private float`	`rotateBeginY`	DOCUMENT ME!
`private float`	`rotateBeginZ`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextX`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextY`	DOCUMENT ME!
`private javax.swing.JTextField`	`rotateEndTextZ`	DOCUMENT ME!
`private float`	`rotateEndX`	private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
`private float`	`rotateEndY`	DOCUMENT ME!
`private float`	`rotateEndZ`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotatePanel`	Variables for Rotation and Translation bounds.
`private javax.swing.JPanel`	`rotateRangePanelX`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotateRangePanelY`	DOCUMENT ME!
`private javax.swing.JPanel`	`rotateRangePanelZ`	DOCUMENT ME!
`private float`	`rotateRangeX`	private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
`private float`	`rotateRangeY`	DOCUMENT ME!
`private float`	`rotateRangeZ`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`sampleCheckbox`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JTextField`	`textInput`	DOCUMENT ME!
`private javax.swing.JTextField`	`textRef`	DOCUMENT ME!
`private javax.swing.JLabel`	`toLabelX`	DOCUMENT ME!
`private javax.swing.JLabel`	`toLabelY`	DOCUMENT ME!
`private javax.swing.JLabel`	`toLabelZ`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`transformCheckbox`	DOCUMENT ME!
`private javax.swing.JPanel`	`translatePanel`	DOCUMENT ME!
`private javax.swing.JPanel`	`translateRangePanelX`	private JPanel finePanelX, finePanelY, finePanelZ;.
`private javax.swing.JPanel`	`translateRangePanelY`	private JPanel finePanelX, finePanelY, finePanelZ;.
`private javax.swing.JPanel`	`translateRangePanelZ`	private JPanel finePanelX, finePanelY, finePanelZ;.
`private float[][]`	`transLimits`	DOCUMENT ME!
`private ViewUserInterface`	`UI`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`universalRotationCheckbox`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`universalTranslationCheckbox`	DOCUMENT ME!
`private boolean`	`useELSUNC`
`private javax.swing.JLabel`	`userDirectoryLabel`
`private javax.swing.JTextField`	`userDirectoryText`
`private javax.swing.JLabel`	`valueLabel`
`private javax.swing.JTextField`	`valueText`
`private javax.swing.JRadioButton`	`voiRadio`	DOCUMENT ME!
`private boolean`	`voisOnly`	DOCUMENT ME!
`private boolean`	`weighted`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`weightRadio`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`xRRadio`	DOCUMENT ME!
`private boolean`	`xRSelected`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`yRRadio`	DOCUMENT ME!
`private boolean`	`yRSelected`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`zRRadio`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogConstrainedOAR3D()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogConstrainedOAR3D(java.awt.Frame theParentFrame, ModelImage im)`	Creates new dialog for user to choose type of linear image registration algorithm to run.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`private javax.swing.JDialog`	`buildAdvancedDialog(int bracketBound, int maxIter, int numMinima, boolean limitTrans, boolean oneTrans)`	Build advanced settings dialog.
`private javax.swing.JComboBox`	`buildImgComboBox(ModelImage image)`	Builds a list of images.
`protected void`	`callAlgorithm()`	Calls the algorithm with the set-up parameters.
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`private void`	`enableTranslationsYZ(boolean state)`	DOCUMENT ME!
`private void`	`enableTranslationX(boolean state)`	DOCUMENT ME!
`ModelImage`	`getResultImage()`	Accessor to get the result image.
`private void`	`init()`	Initializes the GUI components and displays the dialog.
`void`	`itemStateChanged(java.awt.event.ItemEvent event)`	Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
`void`	`setAdvancedSettings(int bracketBound, int maxIterations, int numMinima)`	Accessor to set the advanced settings.
`void`	`setCalcCOG(boolean flag)`	Accessor to set the whether or not to calculate the center of gravity (mass).
`void`	`setCoarseBeginX(float x)`	Accessor to set the coarse sample beginX.
`void`	`setCoarseBeginY(float y)`	Accessor to set the coarse sample beginY.
`void`	`setCoarseBeginZ(float z)`	Accessor to set the coarse sample beginZ.
`void`	`setCoarseEndX(float x)`	Accessor to set the coarse sample endX.
`void`	`setCoarseEndY(float y)`	Accessor to set the coarse sample endY.
`void`	`setCoarseEndZ(float z)`	Accessor to set the coarse sample endZ.
`void`	`setCostChoice(int x)`	Accessor to set the choice of cost function.
`void`	`setDisplayTransform(boolean flag)`	Accessor to set the display transform flag.
`void`	`setDOF(int x)`	Accessor to set the degrees of freedom.
`void`	`setFastMode(boolean flag)`	Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).
`void`	`setFillValue(float fillValue)`	Accessor to set intensity value for out of bounds data
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setInputWeightImage(ModelImage im)`	Accessor to set the input weight image.
`void`	`setInterp(int x)`	Accessor to set the initial interpolation.
`void`	`setInterp2(int x)`	Accessor to set the final interpolation.
`void`	`setMatrixDirectory(java.lang.String matrixDirectory)`	Accessor to set directory in which the matrix file is stored
`void`	`setMaxOfMinResol(boolean flag)`	Accessor to set the maximum resolutions flag.
`void`	`setMaxTx(float maxX)`	Accessor to set the maximum X translation.
`void`	`setMaxTy(float maxY)`	Accessor to set the maximum Y translation.
`void`	`setMaxTz(float maxZ)`	Accessor to set the maximum Z translation.
`void`	`setMinTx(float minX)`	Accessor to set the minimum X translation.
`void`	`setMinTy(float minY)`	Accessor to set the minimum Y translation.
`void`	`setMinTz(float minZ)`	Accessor to set the minimum Z translation.
`void`	`setNumCoarseX(int x)`	Accessor to set the coarse sample rateX.
`void`	`setNumCoarseY(int y)`	Accessor to set the coarse sample rateY.
`void`	`setNumCoarseZ(int z)`	Accessor to set the coarse sample rateZ.
`void`	`setOutOfBoundsIndex(int outOfBoundsIndex)`	tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max
`void`	`setReferenceImage(ModelImage im)`	Accessor to set the reference image.
`void`	`setReferenceWeightImage(ModelImage im)`	Accessor to set the reference weight image.
`void`	`setSubsample(boolean doSubsample)`	Accessor to set whether or not subsampling occurs.
`void`	`setUseELSUNC(boolean useELSUNC)`	Accessor to set whether to use Powell's algorithm calling Brent's method or ELSUNC for search algorithm
`private boolean`	`setVariables()`	Sets the variables needed to call the registration algorithm based on the values entered in the dialog.
`void`	`setVoisOnly(boolean flag)`	Accessor to set the VOIs only flag.
`void`	`setWeighted(boolean flag)`	Accessor to set the weighted images flag.
`private void`	`showX()`	DOCUMENT ME!
`private void`	`showY()`	DOCUMENT ME!
`private void`	`showZ()`	DOCUMENT ME!
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.
`private boolean`	`testType(int type, float value)`	Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - advancedDialog
```
private javax.swing.JDialog advancedDialog
```
    Variables for Advanced Settings dialog.
  - bracketBoundText
```
private javax.swing.JTextField bracketBoundText
```
    DOCUMENT ME!
  - maxIterationsText
```
private javax.swing.JTextField maxIterationsText
```
    DOCUMENT ME!
  - numMinText
```
private javax.swing.JTextField numMinText
```
    DOCUMENT ME!
  - buttonWeightInput
```
private javax.swing.JButton buttonWeightInput
```
    DOCUMENT ME!
  - buttonWeightRef
```
private javax.swing.JButton buttonWeightRef
```
    DOCUMENT ME!
  - calcCOG
```
private boolean calcCOG
```
    DOCUMENT ME!
  - calcCOGCheckbox
```
private javax.swing.JCheckBox calcCOGCheckbox
```
    DOCUMENT ME!
  - coarsePanelX
```
private javax.swing.JPanel coarsePanelX
```
    DOCUMENT ME!
  - coarsePanelY
```
private javax.swing.JPanel coarsePanelY
```
    DOCUMENT ME!
  - coarsePanelZ
```
private javax.swing.JPanel coarsePanelZ
```
    DOCUMENT ME!
  - comboBoxCostFunct
```
private javax.swing.JComboBox comboBoxCostFunct
```
    DOCUMENT ME!
  - comboBoxSearchAlgo
```
private javax.swing.JComboBox comboBoxSearchAlgo
```
  - comboBoxDOF
```
private javax.swing.JComboBox comboBoxDOF
```
    DOCUMENT ME!
  - comboBoxImage
```
private javax.swing.JComboBox comboBoxImage
```
    DOCUMENT ME!
  - comboBoxInterp
```
private javax.swing.JComboBox comboBoxInterp
```
    DOCUMENT ME!
  - comboBoxInterp2
```
private javax.swing.JComboBox comboBoxInterp2
```
    DOCUMENT ME!
  - cost
```
private int cost
```
    DOCUMENT ME!
  - interp
```
private int interp
```
    DOCUMENT ME!
  - interp2
```
private int interp2
```
    DOCUMENT ME!
  - DOF
```
private int DOF
```
    DOCUMENT ME!
  - costName
```
private java.lang.String costName
```
    DOCUMENT ME!
  - displayTransform
```
private boolean displayTransform
```
    DOCUMENT ME!
  - doColor
```
private boolean doColor
```
    DOCUMENT ME!
  - doSubsample
```
private boolean doSubsample
```
    DOCUMENT ME!
  - fastMode
```
private boolean fastMode
```
    DOCUMENT ME!
  - fastModeCheckbox
```
private javax.swing.JCheckBox fastModeCheckbox
```
    DOCUMENT ME!
  - fileNameWRef
```
private java.lang.String fileNameWRef
```
    DOCUMENT ME!
  - directoryWRef
```
private java.lang.String directoryWRef
```
    DOCUMENT ME!
  - fileNameWInput
```
private java.lang.String fileNameWInput
```
    DOCUMENT ME!
  - directoryWInput
```
private java.lang.String directoryWInput
```
    DOCUMENT ME!
  - gbc
```
private java.awt.GridBagConstraints gbc
```
    DOCUMENT ME!
  - inputWeightImage
```
private ModelImage inputWeightImage
```
    DOCUMENT ME!
  - refWeightImage
```
private ModelImage refWeightImage
```
    DOCUMENT ME!
  - labelInterp2
```
private javax.swing.JLabel labelInterp2
```
    DOCUMENT ME!
  - labelTranslateRangeX
```
private javax.swing.JLabel labelTranslateRangeX
```
    DOCUMENT ME!
  - labelTranslateRangeY
```
private javax.swing.JLabel labelTranslateRangeY
```
    DOCUMENT ME!
  - labelTranslateRangeZ
```
private javax.swing.JLabel labelTranslateRangeZ
```
    DOCUMENT ME!
  - limitTranslation
```
private boolean limitTranslation
```
    DOCUMENT ME!
  - oneTransLimit
```
private boolean oneTransLimit
```
    DOCUMENT ME!
  - limitTranslationCheckbox
```
private javax.swing.JCheckBox limitTranslationCheckbox
```
    DOCUMENT ME!
  - matchImage
```
private ModelImage matchImage
```
    DOCUMENT ME!
  - maxIterations_def
```
private int maxIterations_def
```
    DOCUMENT ME!
  - bracketBound_def
```
private int bracketBound_def
```
    DOCUMENT ME!
  - numMinima_def
```
private int numMinima_def
```
    DOCUMENT ME!
  - maxIterations
```
private int maxIterations
```
    DOCUMENT ME!
  - bracketBound
```
private int bracketBound
```
    DOCUMENT ME!
  - maxLimits
```
private float[][] maxLimits
```
    when done debugging: private boolean limitTranslation = false, oneTransLimit = false;.
  - maxOfMinResol
```
private boolean maxOfMinResol
```
    DOCUMENT ME!
  - maxTransTextX
```
private javax.swing.JTextField maxTransTextX
```
    DOCUMENT ME!
  - maxTransTextY
```
private javax.swing.JTextField maxTransTextY
```
    DOCUMENT ME!
  - maxTransTextZ
```
private javax.swing.JTextField maxTransTextZ
```
    DOCUMENT ME!
  - minMaxCheckbox
```
private javax.swing.JCheckBox minMaxCheckbox
```
    DOCUMENT ME!
  - minTransTextX
```
private javax.swing.JTextField minTransTextX
```
    DOCUMENT ME!
  - minTransTextY
```
private javax.swing.JTextField minTransTextY
```
    DOCUMENT ME!
  - minTransTextZ
```
private javax.swing.JTextField minTransTextZ
```
    DOCUMENT ME!
  - mmLabelX
```
private javax.swing.JLabel mmLabelX
```
    DOCUMENT ME!
  - mmLabelY
```
private javax.swing.JLabel mmLabelY
```
    DOCUMENT ME!
  - mmLabelZ
```
private javax.swing.JLabel mmLabelZ
```
    DOCUMENT ME!
  - noneRadio
```
private javax.swing.JRadioButton noneRadio
```
    DOCUMENT ME!
  - numberCoarseTextX
```
private javax.swing.JTextField numberCoarseTextX
```
    DOCUMENT ME!
  - numberCoarseTextY
```
private javax.swing.JTextField numberCoarseTextY
```
    DOCUMENT ME!
  - numberCoarseTextZ
```
private javax.swing.JTextField numberCoarseTextZ
```
    DOCUMENT ME!
  - numCoarseX
```
private int numCoarseX
```
    DOCUMENT ME!
  - numCoarseY
```
private int numCoarseY
```
    DOCUMENT ME!
  - numCoarseZ
```
private int numCoarseZ
```
    DOCUMENT ME!
  - numMinima
```
private int numMinima
```
    DOCUMENT ME!
  - refImage
```
private ModelImage refImage
```
    DOCUMENT ME!
  - reg3E
```
private AlgorithmConstrainedELSUNCOAR3D reg3E
```
    DOCUMENT ME!
  - reg3
```
private AlgorithmConstrainedOAR3D reg3
```
  - resultImage
```
private ModelImage resultImage
```
    DOCUMENT ME!
  - rotateBeginTextX
```
private javax.swing.JTextField rotateBeginTextX
```
    DOCUMENT ME!
  - rotateBeginTextY
```
private javax.swing.JTextField rotateBeginTextY
```
    DOCUMENT ME!
  - rotateBeginTextZ
```
private javax.swing.JTextField rotateBeginTextZ
```
    DOCUMENT ME!
  - rotateBeginX
```
private float rotateBeginX
```
    private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
  - rotateEndX
```
private float rotateEndX
```
    private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
  - rotateRangeX
```
private float rotateRangeX
```
    private JTextField fineRateTextX, fineRateTextY, fineRateTextZ;.
  - rotateBeginY
```
private float rotateBeginY
```
    DOCUMENT ME!
  - rotateEndY
```
private float rotateEndY
```
    DOCUMENT ME!
  - rotateRangeY
```
private float rotateRangeY
```
    DOCUMENT ME!
  - rotateBeginZ
```
private float rotateBeginZ
```
    DOCUMENT ME!
  - rotateEndZ
```
private float rotateEndZ
```
    DOCUMENT ME!
  - rotateRangeZ
```
private float rotateRangeZ
```
    DOCUMENT ME!
  - rotateEndTextX
```
private javax.swing.JTextField rotateEndTextX
```
    DOCUMENT ME!
  - rotateEndTextY
```
private javax.swing.JTextField rotateEndTextY
```
    DOCUMENT ME!
  - rotateEndTextZ
```
private javax.swing.JTextField rotateEndTextZ
```
    DOCUMENT ME!
  - rotatePanel
```
private javax.swing.JPanel rotatePanel
```
    Variables for Rotation and Translation bounds.
  - rotateRangePanelX
```
private javax.swing.JPanel rotateRangePanelX
```
    DOCUMENT ME!
  - rotateRangePanelY
```
private javax.swing.JPanel rotateRangePanelY
```
    DOCUMENT ME!
  - rotateRangePanelZ
```
private javax.swing.JPanel rotateRangePanelZ
```
    DOCUMENT ME!
  - sampleCheckbox
```
private javax.swing.JCheckBox sampleCheckbox
```
    DOCUMENT ME!
  - textInput
```
private javax.swing.JTextField textInput
```
    DOCUMENT ME!
  - textRef
```
private javax.swing.JTextField textRef
```
    DOCUMENT ME!
  - toLabelX
```
private javax.swing.JLabel toLabelX
```
    DOCUMENT ME!
  - toLabelY
```
private javax.swing.JLabel toLabelY
```
    DOCUMENT ME!
  - toLabelZ
```
private javax.swing.JLabel toLabelZ
```
    DOCUMENT ME!
  - transformCheckbox
```
private javax.swing.JCheckBox transformCheckbox
```
    DOCUMENT ME!
  - translatePanel
```
private javax.swing.JPanel translatePanel
```
    DOCUMENT ME!
  - translateRangePanelX
```
private javax.swing.JPanel translateRangePanelX
```
    private JPanel finePanelX, finePanelY, finePanelZ;.
  - translateRangePanelY
```
private javax.swing.JPanel translateRangePanelY
```
    private JPanel finePanelX, finePanelY, finePanelZ;.
  - translateRangePanelZ
```
private javax.swing.JPanel translateRangePanelZ
```
    private JPanel finePanelX, finePanelY, finePanelZ;.
  - transLimits
```
private float[][] transLimits
```
    DOCUMENT ME!
  - UI
```
private ViewUserInterface UI
```
    DOCUMENT ME!
  - universalRotationCheckbox
```
private javax.swing.JCheckBox universalRotationCheckbox
```
    DOCUMENT ME!
  - universalTranslationCheckbox
```
private javax.swing.JCheckBox universalTranslationCheckbox
```
    DOCUMENT ME!
  - voiRadio
```
private javax.swing.JRadioButton voiRadio
```
    DOCUMENT ME!
  - voisOnly
```
private boolean voisOnly
```
    DOCUMENT ME!
  - weighted
```
private boolean weighted
```
    DOCUMENT ME!
  - weightRadio
```
private javax.swing.JRadioButton weightRadio
```
    DOCUMENT ME!
  - xRRadio
```
private javax.swing.JRadioButton xRRadio
```
    DOCUMENT ME!
  - yRRadio
```
private javax.swing.JRadioButton yRRadio
```
    DOCUMENT ME!
  - zRRadio
```
private javax.swing.JRadioButton zRRadio
```
    DOCUMENT ME!
  - xRSelected
```
private boolean xRSelected
```
    DOCUMENT ME!
  - yRSelected
```
private boolean yRSelected
```
    DOCUMENT ME!
  - outOfBoundsLabel
```
private javax.swing.JLabel outOfBoundsLabel
```
  - outOfBoundsComboBox
```
private javax.swing.JComboBox outOfBoundsComboBox
```
  - valueLabel
```
private javax.swing.JLabel valueLabel
```
  - valueText
```
private javax.swing.JTextField valueText
```
  - imageMin
```
private double imageMin
```
  - imageMax
```
private double imageMax
```
  - dataType
```
private int dataType
```
  - outOfBoundsIndex
```
private int outOfBoundsIndex
```
    Tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image maximum
  - fillValue
```
private float fillValue
```
  - matrixLabel
```
private javax.swing.JLabel matrixLabel
```
  - matrixComboBox
```
private javax.swing.JComboBox matrixComboBox
```
  - matrixDirectory
```
private java.lang.String matrixDirectory
```
  - userDirectoryLabel
```
private javax.swing.JLabel userDirectoryLabel
```
  - userDirectoryText
```
private javax.swing.JTextField userDirectoryText
```
  - useELSUNC
```
private boolean useELSUNC
```
- Constructor Detail
  - JDialogConstrainedOAR3D
```
public JDialogConstrainedOAR3D()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogConstrainedOAR3D
```
public JDialogConstrainedOAR3D(java.awt.Frame theParentFrame,
                               ModelImage im)
```
    Creates new dialog for user to choose type of linear image registration algorithm to run.
    
    Parameters:
    
    theParentFrame - Parent frame.
    
    im - Source image.
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed, sets the variables, and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to complete.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - getResultImage
```
public ModelImage getResultImage()
```
    Accessor to get the result image.
    
    Returns:
    
    Result image.
  - itemStateChanged
```
public void itemStateChanged(java.awt.event.ItemEvent event)
```
    Changes the interpolation box to enabled or disabled depending on if the transform box is checked or not.
    
    Specified by:
    
    itemStateChanged in interface java.awt.event.ItemListener
    
    Overrides:
    
    itemStateChanged in class JDialogBase
    
    Parameters:
    
    event - Event that triggered this function.
  - setAdvancedSettings
```
public void setAdvancedSettings(int bracketBound,
                                int maxIterations,
                                int numMinima)
```
    Accessor to set the advanced settings.
    
    Parameters:
    
    bracketBound - DOCUMENT ME!
    
    maxIterations - DOCUMENT ME!
    
    numMinima - DOCUMENT ME!
  - setCalcCOG
```
public void setCalcCOG(boolean flag)
```
    Accessor to set the whether or not to calculate the center of gravity (mass).
    
    Parameters:
    
    flag - true then calculate center of gravity (mass).
  - setCoarseBeginX
```
public void setCoarseBeginX(float x)
```
    Accessor to set the coarse sample beginX.
    
    Parameters:
    
    x - Coarse beginX
  - setCoarseBeginY
```
public void setCoarseBeginY(float y)
```
    Accessor to set the coarse sample beginY.
    
    Parameters:
    
    y - Coarse beginY
  - setCoarseBeginZ
```
public void setCoarseBeginZ(float z)
```
    Accessor to set the coarse sample beginZ.
    
    Parameters:
    
    z - Coarse beginZ
  - setCoarseEndX
```
public void setCoarseEndX(float x)
```
    Accessor to set the coarse sample endX.
    
    Parameters:
    
    x - Coarse endX
  - setCoarseEndY
```
public void setCoarseEndY(float y)
```
    Accessor to set the coarse sample endY.
    
    Parameters:
    
    y - Coarse endY
  - setCoarseEndZ
```
public void setCoarseEndZ(float z)
```
    Accessor to set the coarse sample endZ.
    
    Parameters:
    
    z - Coarse endZ
  - setCostChoice
```
public void setCostChoice(int x)
```
    Accessor to set the choice of cost function.
    
    Parameters:
    
    x - Cost function.
  - setDisplayTransform
```
public void setDisplayTransform(boolean flag)
```
    Accessor to set the display transform flag.
    
    Parameters:
    
    flag - true means display the transformed image.
  - setDOF
```
public void setDOF(int x)
```
    Accessor to set the degrees of freedom.
    
    Parameters:
    
    x - Degrees of freedom
  - setFastMode
```
public void setFastMode(boolean flag)
```
    Accessor to set whether or not to execute the fast mode (skip sub sample and goto last final optimization).
    
    Parameters:
    
    flag - true then skip to level one (last ) optimization.
  - setInputWeightImage
```
public void setInputWeightImage(ModelImage im)
```
    Accessor to set the input weight image.
    
    Parameters:
    
    im - Input weight image.
  - setInterp
```
public void setInterp(int x)
```
    Accessor to set the initial interpolation.
    
    Parameters:
    
    x - Interpolation
  - setInterp2
```
public void setInterp2(int x)
```
    Accessor to set the final interpolation.
    
    Parameters:
    
    x - Interpolation
  - setMaxOfMinResol
```
public void setMaxOfMinResol(boolean flag)
```
    Accessor to set the maximum resolutions flag.
    
    Parameters:
    
    flag - true then use the maximum of minimums of the resolutions of the images.
  - setMaxTx
```
public void setMaxTx(float maxX)
```
    Accessor to set the maximum X translation.
    
    Parameters:
    
    maxX - maximum x
  - setMaxTy
```
public void setMaxTy(float maxY)
```
    Accessor to set the maximum Y translation.
    
    Parameters:
    
    maxY - maximum y
  - setMaxTz
```
public void setMaxTz(float maxZ)
```
    Accessor to set the maximum Z translation.
    
    Parameters:
    
    maxZ - maximum z
  - setMinTx
```
public void setMinTx(float minX)
```
    Accessor to set the minimum X translation.
    
    Parameters:
    
    minX - minimum x
  - setMinTy
```
public void setMinTy(float minY)
```
    Accessor to set the minimum Y translation.
    
    Parameters:
    
    minY - minimum y
  - setMinTz
```
public void setMinTz(float minZ)
```
    Accessor to set the minimum Z translation.
    
    Parameters:
    
    minZ - minimum z
  - setNumCoarseX
```
public void setNumCoarseX(int x)
```
    Accessor to set the coarse sample rateX.
    
    Parameters:
    
    x - Coarse rateX
  - setNumCoarseY
```
public void setNumCoarseY(int y)
```
    Accessor to set the coarse sample rateY.
    
    Parameters:
    
    y - Coarse rateY
  - setNumCoarseZ
```
public void setNumCoarseZ(int z)
```
    Accessor to set the coarse sample rateZ.
    
    Parameters:
    
    z - Coarse rateZ
  - setReferenceImage
```
public void setReferenceImage(ModelImage im)
```
    Accessor to set the reference image.
    
    Parameters:
    
    im - Reference image.
  - setReferenceWeightImage
```
public void setReferenceWeightImage(ModelImage im)
```
    Accessor to set the reference weight image.
    
    Parameters:
    
    im - Reference weight image.
  - setSubsample
```
public void setSubsample(boolean doSubsample)
```
    Accessor to set whether or not subsampling occurs.
    
    Parameters:
    
    doSubsample - DOCUMENT ME!
  - setUseELSUNC
```
public void setUseELSUNC(boolean useELSUNC)
```
    Accessor to set whether to use Powell's algorithm calling Brent's method or ELSUNC for search algorithm
    
    Parameters:
    
    useELSUNC -
  - setVoisOnly
```
public void setVoisOnly(boolean flag)
```
    Accessor to set the VOIs only flag.
    
    Parameters:
    
    flag - true then only register the parts of the images in the VOIs.
  - setWeighted
```
public void setWeighted(boolean flag)
```
    Accessor to set the weighted images flag.
    
    Parameters:
    
    flag - true means there are weighted images.
  - setOutOfBoundsIndex
```
public void setOutOfBoundsIndex(int outOfBoundsIndex)
```
    tells how to select fill value for out of bounds data 0 for image minimum 1 for NaN for float, zero otherwise. 2 for user defined 3 for image max
    
    Parameters:
    
    outOfBoundsIndex -
  - setFillValue
```
public void setFillValue(float fillValue)
```
    Accessor to set intensity value for out of bounds data
    
    Parameters:
    
    fillValue -
  - setMatrixDirectory
```
public void setMatrixDirectory(java.lang.String matrixDirectory)
```
    Accessor to set directory in which the matrix file is stored
    
    Parameters:
    
    matrixDirectory -
  - callAlgorithm
```
protected void callAlgorithm()
```
    Calls the algorithm with the set-up parameters.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - buildAdvancedDialog
```
private javax.swing.JDialog buildAdvancedDialog(int bracketBound,
                                                int maxIter,
                                                int numMinima,
                                                boolean limitTrans,
                                                boolean oneTrans)
```
    Build advanced settings dialog. Returns JDialog.
    
    Parameters:
    
    bracketBound - DOCUMENT ME!
    
    maxIter - DOCUMENT ME!
    
    numMinima - DOCUMENT ME!
    
    limitTrans - DOCUMENT ME!
    
    oneTrans - DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - buildImgComboBox
```
private javax.swing.JComboBox buildImgComboBox(ModelImage image)
```
    Builds a list of images. Returns combobox.
    
    Parameters:
    
    image - DOCUMENT ME!
    
    Returns:
    
    Newly created combo box.
  - enableTranslationsYZ
```
private void enableTranslationsYZ(boolean state)
```
    DOCUMENT ME!
    
    Parameters:
    
    state - DOCUMENT ME!
  - enableTranslationX
```
private void enableTranslationX(boolean state)
```
    DOCUMENT ME!
    
    Parameters:
    
    state - DOCUMENT ME!
  - init
```
private void init()
```
    Initializes the GUI components and displays the dialog.
  - setVariables
```
private boolean setVariables()
```
    Sets the variables needed to call the registration algorithm based on the values entered in the dialog.
    
    Returns:
    
    true if the variables are properly set, false otherwise.
  - testType
```
private boolean testType(int type,
                         float value)
```
    Determine if the value is in the image type range and within the float range since AlgorithmTransform does not use double buffers.
    
    Parameters:
    
    type - image type
    
    value - value tested
    
    Returns:
    
    true if value is within acceptable range
  - showX
```
private void showX()
```
    DOCUMENT ME!
  - showY
```
private void showY()
```
    DOCUMENT ME!
  - showZ
```
private void showZ()
```
    DOCUMENT ME!

Class JDialogConstrainedOAR3D

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

serialVersionUID

advancedDialog

bracketBoundText

maxIterationsText

numMinText

buttonWeightInput

buttonWeightRef

calcCOG

calcCOGCheckbox

coarsePanelX

coarsePanelY

coarsePanelZ

comboBoxCostFunct

comboBoxSearchAlgo

comboBoxDOF

comboBoxImage

comboBoxInterp

comboBoxInterp2

cost

interp

interp2

DOF

costName

displayTransform

doColor

doSubsample

fastMode

fastModeCheckbox

fileNameWRef

directoryWRef

fileNameWInput

directoryWInput

gbc

inputWeightImage

refWeightImage

labelInterp2

labelTranslateRangeX

labelTranslateRangeY

labelTranslateRangeZ

limitTranslation

oneTransLimit

limitTranslationCheckbox

matchImage

maxIterations_def

bracketBound_def

numMinima_def

maxIterations

bracketBound

maxLimits

maxOfMinResol

maxTransTextX

maxTransTextY

maxTransTextZ