Package gov.nih.mipav.model.algorithms.registration

Class AlgorithmRegBSpline

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.registration.AlgorithmRegBSpline

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener

Direct Known Subclasses:

AlgorithmRegBSpline25D, AlgorithmRegBSpline2D, AlgorithmRegBSpline3D

public abstract class AlgorithmRegBSpline
extends AlgorithmBase

This is a common base class which provides common methods and data members for all BSpline based registration.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AlgorithmRegBSpline.Options	Data structure which contains the parameters or options used to perform a BSpline based registration of two images.

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
protected ModelImage	m_kImageDeformation	Reference to an image to store the computed deformation.
protected ModelImage	m_kImageResult	Reference to an image to store the registered source image.
protected ModelImage	m_kImageSource	Reference to the original input image to use as the registration source.
protected ModelImage	m_kImageTarget	Reference to the original input image to use as the registration target.
protected AlgorithmRegBSpline.Options	m_kOptionsPass1	Options to use for a first pass of registration.
protected AlgorithmRegBSpline.Options	m_kOptionsPass2	Options to use for a second pass of registration.
protected RegistrationMeasure	m_kRegMeasure	Reference to the particular cost measure to use for this registration.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AlgorithmRegBSpline(ModelImage kImageResult, ModelImage kImageSource, ModelImage kImageTarget, ModelImage kImageDeformation, RegistrationMeasure kRegMeasure, AlgorithmRegBSpline.Options kOptionsPass1, AlgorithmRegBSpline.Options kOptionsPass2)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	disposeLocal()	Prepares this class for destruction.
void	finalize()	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, runAlgorithm, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

m_kImageDeformation

protected ModelImage m_kImageDeformation

Reference to an image to store the computed deformation. This may be a null reference to indicate that the deformation is not to be computed. If this reference is not null, then the image must have the same dimensions as the target image.

m_kImageResult

protected ModelImage m_kImageResult

Reference to an image to store the registered source image. This image must have the same dimensions as the registration target image.

m_kImageSource

protected ModelImage m_kImageSource

Reference to the original input image to use as the registration source. This image does not have to have the same dimensions as the image to be used as the registration target.

m_kImageTarget

protected ModelImage m_kImageTarget

Reference to the original input image to use as the registration target.

m_kOptionsPass1

protected AlgorithmRegBSpline.Options m_kOptionsPass1

Options to use for a first pass of registration. This may *not* be a null reference.

m_kOptionsPass2

protected AlgorithmRegBSpline.Options m_kOptionsPass2

Options to use for a second pass of registration. This may be null to indicate that only a single pass of registration is to be performed.

m_kRegMeasure

protected RegistrationMeasure m_kRegMeasure

Reference to the particular cost measure to use for this registration. The cost measure is the same for all passes.

Constructor Detail

AlgorithmRegBSpline

protected AlgorithmRegBSpline(ModelImage kImageResult,
                              ModelImage kImageSource,
                              ModelImage kImageTarget,
                              ModelImage kImageDeformation,
                              RegistrationMeasure kRegMeasure,
                              AlgorithmRegBSpline.Options kOptionsPass1,
                              AlgorithmRegBSpline.Options kOptionsPass2)

Constructor.

Parameters:

kImageResult - ModelImage Reference to an image to store the registered source image. This image must have the same dimensions as the registration target image.

kImageSource - ModelImage Reference to the original input image to use as the registration source. This image does not have to have the same dimensions as the image to be used as the registration target.

kImageTarget - ModelImage Reference to the original input image to use as the registration target.

kImageDeformation - ModelImage Reference to an image to store the computed deformation. This may be a null reference to indicate that the deformation is not to be computed. If this reference is not null, then the image must have the same dimensions as the target image.

kRegMeasure - RegistrationMeasure Reference to the particular cost measure to use for this registration. The cost measure is the same for all passes.

kOptionsPass1 - Options Options to use for a first pass of registration. This may *not* be a null reference.

kOptionsPass2 - Options Options to use for a second pass of registration. This may be null to indicate that only a single pass of registration is to be performed.

Method Detail

disposeLocal

public void disposeLocal()

Prepares this class for destruction.

finalize

public void finalize()

DOCUMENT ME!

Overrides:

finalize in class AlgorithmBase