Package gov.nih.mipav.view.dialogs

Class JDialogReorient

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      private void buildTemplateList()  
      protected void callAlgorithm()
      Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
      protected void callAlgorithmRun()
      For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
      ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      protected void doPostAlgorithmActions()
      Perform any actions required after the running of the algorithm is complete.
      void doRun()
      For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees).
      ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      javax.swing.JComboBox getNewOrientBox()  
      java.lang.String getOutputImageName​(java.lang.String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      ModelImage getResultImage()
      Accessor that returns the image.
      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.
      boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      void itemStateChanged​(java.awt.event.ItemEvent e)
      Unchanged.
      void set_axial_orientation()
      For prostate and knees projects, setting the axail orientation.
      void set_coronal_orientation()
      For prostate and knees projects, setting the coronal orientation.
      void set_sagittal_orientation()
      For prostate and knees projects, setting the sagittal orientation.
      protected void setGUIFromParams()
      Set up the dialog GUI based on the parameters before running the algorithm as part of a script.
      void setParameters()
      Accessor that sets the parameters
      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      protected void storeParamsFromGUI()
      Store the parameters from the dialog to record the execution of this algorithm.

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • orientTypes

        private java.lang.String[] orientTypes

      • newOrientTypes

        private java.lang.String[] newOrientTypes

      • resolutionTypes

        private java.lang.String[] resolutionTypes

      • resolutionIndex

        private int resolutionIndex

      • interpTypes

        private java.lang.String[] interpTypes

      • interpType

        private java.lang.String interpType

      • orients

        private java.lang.String[] orients

      • mainPanel

        private javax.swing.JPanel mainPanel

      • labelResType

        private javax.swing.JLabel labelResType

      • comboResType

        private javax.swing.JComboBox comboResType

      • labelTemplate

        private javax.swing.JLabel labelTemplate

      • comboTemplate

        private javax.swing.JComboBox comboTemplate

      • labelInterpType

        private javax.swing.JLabel labelInterpType

      • comboInterpType

        private javax.swing.JComboBox comboInterpType

      • presentOrientLabel2

        private javax.swing.JLabel presentOrientLabel2

      • presentOrientBoxX

        private javax.swing.JComboBox presentOrientBoxX

      • presentOrientBoxY

        private javax.swing.JComboBox presentOrientBoxY

      • presentOrientBoxZ

        private javax.swing.JComboBox presentOrientBoxZ

      • or

        private int[] or

      • newOrientBox

        private javax.swing.JComboBox newOrientBox

      • newOrientBoxX

        private javax.swing.JComboBox newOrientBoxX

      • newOrientBoxY

        private javax.swing.JComboBox newOrientBoxY

      • newOrientBoxZ

        private javax.swing.JComboBox newOrientBoxZ

      • newOr

        private int[] newOr

      • axisOrder

        private int[] axisOrder

      • axisFlip

        private boolean[] axisFlip

    • Constructor Detail

      • JDialogReorient

        public JDialogReorient​(java.awt.Frame theParentFrame,
                       ModelImage im)
        Creates dialog for plugin.
        Parameters:
        parent - Parent frame.
        im - Source image.

      • JDialogReorient

        public JDialogReorient​(ModelImage im)

      • JDialogReorient

        public JDialogReorient()
        Empty constructor needed for dynamic instantiation.

    • Method Detail

      • init

        private void init()
        Sets up the GUI (panels, buttons, etc) and displays it on the screen.

      • buildTemplateList

        private void buildTemplateList()

      • getResultImage

        public ModelImage getResultImage()
        Accessor that returns the image.
        Returns:
        The result image.

      • setParameters

        public void setParameters()
        Accessor that sets the parameters

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Closes dialog box when the OK button is pressed and calls the algorithm.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - Event that triggers function.

      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.

      • setVariables

        private boolean setVariables()
        Use the GUI results to set up the variables needed to run the algorithm.
        Returns:
        true if parameters set successfully, false otherwise.

      • callAlgorithm

        protected void callAlgorithm()
        Once all the necessary variables are set, call the Gaussian Blur algorithm based on what type of image this is and whether or not there is a separate destination image.
        Specified by:
        callAlgorithm in class JDialogScriptableBase

      • setGUIFromParams

        protected void setGUIFromParams()
        Set up the dialog GUI based on the parameters before running the algorithm as part of a script.
        Specified by:
        setGUIFromParams in class JDialogScriptableBase

      • itemStateChanged

        public void itemStateChanged​(java.awt.event.ItemEvent e)
        Description copied from class: JDialogBase
        Unchanged.
        Specified by:
        itemStateChanged in interface java.awt.event.ItemListener
        Overrides:
        itemStateChanged in class JDialogBase
        Parameters:
        e - ItemEvent

      • getActionMetadata

        public ActionMetadata getActionMetadata()
        Return meta-information about this discoverable action for categorization and labeling purposes.
        Specified by:
        getActionMetadata in interface ActionDiscovery
        Returns:
        Metadata for this action.

      • createInputParameters

        public ParameterTable createInputParameters()
        Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
        Specified by:
        createInputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the inputs of this algorithm.

      • createOutputParameters

        public ParameterTable createOutputParameters()
        Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
        Specified by:
        createOutputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the outputs of this algorithm.

      • getOutputImageName

        public java.lang.String getOutputImageName​(java.lang.String imageParamName)
        Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
        Specified by:
        getOutputImageName in interface ActionDiscovery
        Parameters:
        imageParamName - The output image parameter label for which to get the image name.
        Returns:
        The image name of the requested output image parameter label.

      • getNewOrientBox

        public javax.swing.JComboBox getNewOrientBox()

      • isActionComplete

        public boolean isActionComplete()
        Returns whether the action has successfully completed its execution.
        Specified by:
        isActionComplete in interface ActionDiscovery
        Returns:
        True, if the action is complete. False, if the action failed or is still running.

      • set_axial_orientation

        public void set_axial_orientation()
        For prostate and knees projects, setting the axail orientation. Auto processing pipeline, which runs from MIPAV plugin commandline or JDialog calling.

      • set_sagittal_orientation

        public void set_sagittal_orientation()
        For prostate and knees projects, setting the sagittal orientation. Auto processing pipeline, which runs from MIPAV plugin commandline or JDialog calling.

      • set_coronal_orientation

        public void set_coronal_orientation()
        For prostate and knees projects, setting the coronal orientation. Auto processing pipeline, which runs from MIPAV plugin commandline or JDialog calling.

      • doRun

        public void doRun()
        For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees). Auto processing pipeline, which runs from MIPAV plugin commandline or JDialog calling.

      • callAlgorithmRun

        protected void callAlgorithmRun()
        For prostate and knees projects, run the re-orientation algorithm to create three orthogonal images from either axial image (prostate) or saggittal image(knees). Auto processing pipeline, which runs from MIPAV plugin commandline or JDialog calling.