java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Dialog
      - javax.swing.JDialog
        
        gov.nih.mipav.view.dialogs.JDialogBase
        
        gov.nih.mipav.view.dialogs.JDialogScriptableBase
        
        gov.nih.mipav.view.dialogs.JDialogFuzzyCMeans

All Implemented Interfaces:

AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.ItemListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class JDialogFuzzyCMeans
extends JDialogScriptableBase
implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
```
Dialog to get user input, then call the algorithm.

See Also:

AlgorithmFuzzyCMeans, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase
  JDialogBase.CancelAction, JDialogBase.HelpAction, JDialogBase.OKAction
- Nested classes/interfaces inherited from class javax.swing.JDialog
  javax.swing.JDialog.AccessibleJDialog
- Nested classes/interfaces inherited from class java.awt.Dialog
  java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType
- Nested classes/interfaces inherited from class java.awt.Window
  java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`static int`	`BOTH_FUZZY_HARD`	DOCUMENT ME!
`private float[]`	`centroids`	DOCUMENT ME!
`private boolean`	`cropBackground`	DOCUMENT ME!
`private javax.swing.JCheckBox`	`cropCheckbox`	DOCUMENT ME!
`private int[]`	`destExtents`	DOCUMENT ME!
`private float`	`endTol`	DOCUMENT ME!
`private AlgorithmFuzzyCMeans`	`fcmAlgo`	DOCUMENT ME!
`static int`	`FUZZY_ONLY`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`fuzzyOnly`	DOCUMENT ME!
`static int`	`HARD_ONLY`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`hardFuzzyBoth`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`hardOnly`	DOCUMENT ME!
`private ModelImage`	`image`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`imageVOIGroup`	DOCUMENT ME!
`private javax.swing.JPanel`	`imageVOIPanel`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelEndTol`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelExpo`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelMaxIter`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelNClasses`	DOCUMENT ME!
`private javax.swing.JLabel`	`labelSignal`	DOCUMENT ME!
`private int`	`maxIter`	DOCUMENT ME!
`private int`	`nClasses`	DOCUMENT ME!
`private int`	`nPyramid`	DOCUMENT ME!
`private int`	`oneJacobiIter`	DOCUMENT ME!
`private float`	`oneSmooth`	DOCUMENT ME!
`private boolean`	`outputGainField`	private JCheckBox calcGainFieldCheckbox;.
`private javax.swing.JPanel`	`paramPanel`	DOCUMENT ME!
`private int`	`presentNumber`	DOCUMENT ME!
`private float`	`q`	DOCUMENT ME!
`private boolean`	`regionFlag`	DOCUMENT ME!
`private ModelImage[]`	`resultImage`	DOCUMENT ME!
`private int`	`resultNumber`	DOCUMENT ME!
`private int`	`segmentation`	DOCUMENT ME!
`private javax.swing.ButtonGroup`	`segmentationGroup`	DOCUMENT ME!
`private javax.swing.JPanel`	`segmentationPanel`	DOCUMENT ME!
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private javax.swing.JTextField`	`textEndTol`	DOCUMENT ME!
`private javax.swing.JTextField`	`textExpo`	DOCUMENT ME!
`private javax.swing.JTextField`	`textMaxIter`	DOCUMENT ME!
`private javax.swing.JTextField`	`textNClasses`	DOCUMENT ME!
`private javax.swing.JTextField`	`textSignal`	DOCUMENT ME!
`private float`	`threshold`	DOCUMENT ME!
`private int`	`twoJacobiIter`	DOCUMENT ME!
`private float`	`twoSmooth`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`VOIRegions`	DOCUMENT ME!
`private javax.swing.JRadioButton`	`wholeImage`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
displayInNewFrame, isComplete, scriptParameters

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase
applyButton, bar, cancelButton, cancelFlag, closeButton, HELP, helpButton, mainDialogPanel, NEW, OKButton, parentFrame, progressBar, REPLACE, runInSeparateThread, runningScriptFlag, runQuiet, serif12, serif12B, voiManager

Fields inherited from class javax.swing.JDialog
accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog
DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors
Constructor	Description
`JDialogFuzzyCMeans()`	Empty constructor needed for dynamic instantiation (used during scripting).
`JDialogFuzzyCMeans(java.awt.Frame theParentFrame, ModelImage im)`	Creates a new JDialogFuzzyCMeans object.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`actionPerformed(java.awt.event.ActionEvent event)`	Closes dialog box when the OK button is pressed and calls the algorithm.
`void`	`algorithmPerformed(AlgorithmBase algorithm)`	This method is required if the AlgorithmPerformed interface is implemented.
`protected void`	`callAlgorithm()`	Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
`ParameterTable`	`createInputParameters()`	Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in `setGUIFromParams()`).
`ParameterTable`	`createOutputParameters()`	Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
`protected void`	`doPostAlgorithmActions()`	Store the result image in the script runner's image table now that the action execution is finished.
`ActionMetadata`	`getActionMetadata()`	Return meta-information about this discoverable action for categorization and labeling purposes.
`private boolean`	`getCentroids()`	Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
`static float[]`	`getDefaultCentroids(ModelImage image, int nClasses, boolean regionFlag, java.util.BitSet regionMask, boolean cropBackground, float threshold)`
`java.lang.String`	`getOutputImageName(java.lang.String imageParamName)`	Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
`ModelImage[]`	`getResultImage()`	Accessor that returns the image.
`private void`	`init()`	Sets up the GUI (panels, buttons, etc) and displays it on the screen.
`boolean`	`isActionComplete()`	Returns whether the action has successfully completed its execution.
`void`	`setCentroids(float[] centroids)`	Accessor that sets the centroids.
`void`	`setCrop(boolean flag)`	Accessor that sets the crop background flag.
`void`	`setEndTol(float scale)`	Accessor that sets the end tol.
`protected void`	`setGUIFromParams()`	Set the dialog GUI using the script parameters while running this algorithm as part of a script.
`void`	`setMaxIter(int max)`	Accessor that sets the max iterations.
`void`	`setNClasses(int classes)`	Accessor that sets the number of classes.
`void`	`setQ(float scale)`	Accessor that sets the q variable.
`void`	`setRegionFlag(boolean flag)`	Accessor that sets the region flag.
`void`	`setSegmentationType(int type)`	Accessor that sets the segmentation type (BOTH_FUZZY_HARD, FUZZY, or HARD).
`void`	`setThreshold(float scale)`	Accessor that sets the threshold.
`private boolean`	`setVariables()`	Use the GUI results to set up the variables needed to run the algorithm.
`protected void`	`storeParamsFromGUI()`	Record the parameters just used to run this algorithm in a script.

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase
getDialogActionString, insertScriptLine, isComplete, scriptRun, setComplete

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase
buildApplyButton, buildButtons, buildCancelButton, buildCancelButton, buildCloseButton, buildHelpButton, buildImageComboBox, buildOKButton, buildOKButton, buildOKCancelButtons, buildTitledBorder, buildTitledBorder, createLabel, createProgressBar, createProgressBar, createTextField, focusGained, focusLost, getDialogName, isCancelled, isQuietRunning, isRunInSeparateThread, isScriptRunning, itemStateChanged, loadDefaults, loadDefaults, makeImageName, makeString, openNewFrame, saveDefaults, saveDefaults, setLeftHandSystem, setQuietRunning, setScriptRunning, setSeparateThread, setVisible, setVisible, setVisibleMenuBar, setVisibleStandard, setVOIManager, setWCSystem, testParameter, testParameterMin, updateFFTFileInfo, updateFileInfo, updateFileInfoOtherModality, updateFileInfoStatic, updateFileInfoStatic, updateFileTypeInfo, updateFileTypeInfo, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JDialog
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery
scriptRun

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface
insertScriptLine, scriptRun

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - BOTH_FUZZY_HARD
```
public static final int BOTH_FUZZY_HARD
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - FUZZY_ONLY
```
public static final int FUZZY_ONLY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - HARD_ONLY
```
public static final int HARD_ONLY
```
    DOCUMENT ME!
    
    See Also:
    
    Constant Field Values
  - centroids
```
private float[] centroids
```
    DOCUMENT ME!
  - cropBackground
```
private boolean cropBackground
```
    DOCUMENT ME!
  - cropCheckbox
```
private javax.swing.JCheckBox cropCheckbox
```
    DOCUMENT ME!
  - destExtents
```
private int[] destExtents
```
    DOCUMENT ME!
  - endTol
```
private float endTol
```
    DOCUMENT ME!
  - fcmAlgo
```
private AlgorithmFuzzyCMeans fcmAlgo
```
    DOCUMENT ME!
  - fuzzyOnly
```
private javax.swing.JRadioButton fuzzyOnly
```
    DOCUMENT ME!
  - hardFuzzyBoth
```
private javax.swing.JRadioButton hardFuzzyBoth
```
    DOCUMENT ME!
  - hardOnly
```
private javax.swing.JRadioButton hardOnly
```
    DOCUMENT ME!
  - image
```
private ModelImage image
```
    DOCUMENT ME!
  - imageVOIGroup
```
private javax.swing.ButtonGroup imageVOIGroup
```
    DOCUMENT ME!
  - imageVOIPanel
```
private javax.swing.JPanel imageVOIPanel
```
    DOCUMENT ME!
  - labelEndTol
```
private javax.swing.JLabel labelEndTol
```
    DOCUMENT ME!
  - labelExpo
```
private javax.swing.JLabel labelExpo
```
    DOCUMENT ME!
  - labelMaxIter
```
private javax.swing.JLabel labelMaxIter
```
    DOCUMENT ME!
  - labelNClasses
```
private javax.swing.JLabel labelNClasses
```
    DOCUMENT ME!
  - labelSignal
```
private javax.swing.JLabel labelSignal
```
    DOCUMENT ME!
  - maxIter
```
private int maxIter
```
    DOCUMENT ME!
  - nClasses
```
private int nClasses
```
    DOCUMENT ME!
  - nPyramid
```
private int nPyramid
```
    DOCUMENT ME!
  - oneJacobiIter
```
private int oneJacobiIter
```
    DOCUMENT ME!
  - oneSmooth
```
private float oneSmooth
```
    DOCUMENT ME!
  - outputGainField
```
private boolean outputGainField
```
    private JCheckBox calcGainFieldCheckbox;.
  - paramPanel
```
private javax.swing.JPanel paramPanel
```
    DOCUMENT ME!
  - presentNumber
```
private int presentNumber
```
    DOCUMENT ME!
  - q
```
private float q
```
    DOCUMENT ME!
  - regionFlag
```
private boolean regionFlag
```
    DOCUMENT ME!
  - resultImage
```
private ModelImage[] resultImage
```
    DOCUMENT ME!
  - resultNumber
```
private int resultNumber
```
    DOCUMENT ME!
  - segmentation
```
private int segmentation
```
    DOCUMENT ME!
  - segmentationGroup
```
private javax.swing.ButtonGroup segmentationGroup
```
    DOCUMENT ME!
  - segmentationPanel
```
private javax.swing.JPanel segmentationPanel
```
    DOCUMENT ME!
  - textEndTol
```
private javax.swing.JTextField textEndTol
```
    DOCUMENT ME!
  - textExpo
```
private javax.swing.JTextField textExpo
```
    DOCUMENT ME!
  - textMaxIter
```
private javax.swing.JTextField textMaxIter
```
    DOCUMENT ME!
  - textNClasses
```
private javax.swing.JTextField textNClasses
```
    DOCUMENT ME!
  - textSignal
```
private javax.swing.JTextField textSignal
```
    DOCUMENT ME!
  - threshold
```
private float threshold
```
    DOCUMENT ME!
  - twoJacobiIter
```
private int twoJacobiIter
```
    DOCUMENT ME!
  - twoSmooth
```
private float twoSmooth
```
    DOCUMENT ME!
  - VOIRegions
```
private javax.swing.JRadioButton VOIRegions
```
    DOCUMENT ME!
  - wholeImage
```
private javax.swing.JRadioButton wholeImage
```
    DOCUMENT ME!
- Constructor Detail
  - JDialogFuzzyCMeans
```
public JDialogFuzzyCMeans()
```
    Empty constructor needed for dynamic instantiation (used during scripting).
  - JDialogFuzzyCMeans
```
public JDialogFuzzyCMeans(java.awt.Frame theParentFrame,
                          ModelImage im)
```
    Creates a new JDialogFuzzyCMeans object.
    
    Parameters:
    
    theParentFrame - parent frame
    
    im - source image
- Method Detail
  - actionPerformed
```
public void actionPerformed(java.awt.event.ActionEvent event)
```
    Closes dialog box when the OK button is pressed and calls the algorithm.
    
    Specified by:
    
    actionPerformed in interface java.awt.event.ActionListener
    
    Overrides:
    
    actionPerformed in class JDialogBase
    
    Parameters:
    
    event - Event that triggers function.
  - algorithmPerformed
```
public void algorithmPerformed(AlgorithmBase algorithm)
```
    This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
    
    Specified by:
    
    algorithmPerformed in interface AlgorithmInterface
    
    Parameters:
    
    algorithm - Algorithm that caused the event.
  - getResultImage
```
public ModelImage[] getResultImage()
```
    Accessor that returns the image.
    
    Returns:
    
    The result image.
  - setCentroids
```
public void setCentroids(float[] centroids)
```
    Accessor that sets the centroids.
    
    Parameters:
    
    centroids - Value to set centroids to.
  - setCrop
```
public void setCrop(boolean flag)
```
    Accessor that sets the crop background flag.
    
    Parameters:
    
    flag - true indicates crop the background, false otherwise.
  - setEndTol
```
public void setEndTol(float scale)
```
    Accessor that sets the end tol.
    
    Parameters:
    
    scale - Value to set end tol to.
  - setMaxIter
```
public void setMaxIter(int max)
```
    Accessor that sets the max iterations.
    
    Parameters:
    
    max - The max iterations
  - setNClasses
```
public void setNClasses(int classes)
```
    Accessor that sets the number of classes.
    
    Parameters:
    
    classes - The number of classes.
  - setQ
```
public void setQ(float scale)
```
    Accessor that sets the q variable.
    
    Parameters:
    
    scale - Value to set q variable to.
  - setRegionFlag
```
public void setRegionFlag(boolean flag)
```
    Accessor that sets the region flag.
    
    Parameters:
    
    flag - true indicates the whole image is blurred, false indicates a region.
  - setSegmentationType
```
public void setSegmentationType(int type)
```
    Accessor that sets the segmentation type (BOTH_FUZZY_HARD, FUZZY, or HARD).
    
    Parameters:
    
    type - The segmentation type.
  - setThreshold
```
public void setThreshold(float scale)
```
    Accessor that sets the threshold.
    
    Parameters:
    
    scale - Value to set the threshold to.
  - callAlgorithm
```
protected void callAlgorithm()
```
    Once all the necessary variables are set, call the Fuzzy C Means algorithm based on what type of image this is and whether or not there is a separate destination image.
    
    Specified by:
    
    callAlgorithm in class JDialogScriptableBase
  - doPostAlgorithmActions
```
protected void doPostAlgorithmActions()
```
    Store the result image in the script runner's image table now that the action execution is finished.
    
    Overrides:
    
    doPostAlgorithmActions in class JDialogScriptableBase
  - setGUIFromParams
```
protected void setGUIFromParams()
```
    Set the dialog GUI using the script parameters while running this algorithm as part of a script.
    
    Specified by:
    
    setGUIFromParams in class JDialogScriptableBase
  - storeParamsFromGUI
```
protected void storeParamsFromGUI()
                           throws ParserException
```
    Record the parameters just used to run this algorithm in a script.
    
    Specified by:
    
    storeParamsFromGUI in class JDialogScriptableBase
    
    Throws:
    
    ParserException - If there is a problem creating/recording the new parameters.
  - getDefaultCentroids
```
public static float[] getDefaultCentroids(ModelImage image,
                                          int nClasses,
                                          boolean regionFlag,
                                          java.util.BitSet regionMask,
                                          boolean cropBackground,
                                          float threshold)
```
  - getCentroids
```
private boolean getCentroids()
```
    Gets the minimum and maximum of each image and initializes the centroids dialog appropriately.
    
    Returns:
    
    Flag indicating a successful get.
  - init
```
private void init()
```
    Sets up the GUI (panels, buttons, etc) and displays it on the screen.
  - setVariables
```
private boolean setVariables()
```
    Use the GUI results to set up the variables needed to run the algorithm.
    
    Returns:
    
    true if parameters set successfully, false otherwise.
  - getActionMetadata
```
public ActionMetadata getActionMetadata()
```
    Return meta-information about this discoverable action for categorization and labeling purposes.
    
    Specified by:
    
    getActionMetadata in interface ActionDiscovery
    
    Returns:
    
    Metadata for this action.
  - createInputParameters
```
public ParameterTable createInputParameters()
```
    Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
    
    Specified by:
    
    createInputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the inputs of this algorithm.
  - createOutputParameters
```
public ParameterTable createOutputParameters()
```
    Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
    
    Specified by:
    
    createOutputParameters in interface ActionDiscovery
    
    Returns:
    
    A parameter table listing the outputs of this algorithm.
  - getOutputImageName
```
public java.lang.String getOutputImageName(java.lang.String imageParamName)
```
    Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
    
    Specified by:
    
    getOutputImageName in interface ActionDiscovery
    
    Parameters:
    
    imageParamName - The output image parameter label for which to get the image name.
    
    Returns:
    
    The image name of the requested output image parameter label.
  - isActionComplete
```
public boolean isActionComplete()
```
    Returns whether the action has successfully completed its execution.
    
    Specified by:
    
    isActionComplete in interface ActionDiscovery
    
    Returns:
    
    True, if the action is complete. False, if the action failed or is still running.

Class JDialogFuzzyCMeans

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Nested classes/interfaces inherited from class javax.swing.JDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Fields inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Fields inherited from class javax.swing.JDialog

Fields inherited from class java.awt.Dialog

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Fields inherited from interface javax.swing.WindowConstants

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogScriptableBase

Methods inherited from class gov.nih.mipav.view.dialogs.JDialogBase

Methods inherited from class javax.swing.JDialog

Methods inherited from class java.awt.Dialog

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.dialogs.ActionDiscovery

Methods inherited from interface gov.nih.mipav.model.scripting.ScriptableActionInterface

Field Detail

serialVersionUID

BOTH_FUZZY_HARD

FUZZY_ONLY

HARD_ONLY

centroids

cropBackground

cropCheckbox

destExtents

endTol

fcmAlgo

fuzzyOnly

hardFuzzyBoth

hardOnly

image

imageVOIGroup

imageVOIPanel

labelEndTol

labelExpo

labelMaxIter

labelNClasses

labelSignal

maxIter

nClasses

nPyramid

oneJacobiIter

oneSmooth

outputGainField

paramPanel

presentNumber

q

regionFlag

resultImage

resultNumber

segmentation

segmentationGroup

segmentationPanel

textEndTol

textExpo

textMaxIter

textNClasses

textSignal

threshold

twoJacobiIter

twoSmooth

VOIRegions

wholeImage

Constructor Detail

JDialogFuzzyCMeans

JDialogFuzzyCMeans

Method Detail

actionPerformed