Package gov.nih.mipav.view.renderer.J3D.volumeview

Class RendererImageData

java.lang.Object
gov.nih.mipav.view.renderer.J3D.volumeview.RendererImageData
public class RendererImageData extends Object
Storage of values for a 3D volume used by the volume renderers.

  • Field Details

    • m_kZeroVector

      private static final javax.vecmath.Vector3f m_kZeroVector
      DOCUMENT ME!

    • m_acImageA

      private byte[] m_acImageA
      DOCUMENT ME!

    • m_acImageB

      private byte[] m_acImageB
      DOCUMENT ME!

    • m_acImageG

      private byte[] m_acImageG
      DOCUMENT ME!

    • m_acImageR

      private byte[] m_acImageR
      DOCUMENT ME!

    • m_afData

      private float[] m_afData
      DOCUMENT ME!

    • m_iNumVoxels

      private final int m_iNumVoxels
      Dimensions of the volume.

    • m_iSizeX

      private final int m_iSizeX
      DOCUMENT ME!

    • m_iSizeY

      private final int m_iSizeY
      DOCUMENT ME!

    • m_iSizeZ

      private final int m_iSizeZ
      DOCUMENT ME!

    • m_kImage

      private ModelImage m_kImage
      DOCUMENT ME!

    • m_kImageGradMag

      private ModelSimpleImage m_kImageGradMag
      DOCUMENT ME!

    • m_kIntensityRGB

      private ModelRGB m_kIntensityRGB
      RGB intensity map for color images only.

    • m_kOpacityRGB

      private ModelRGB m_kOpacityRGB
      RGB opacity map for color images only.

  • Constructor Details

    • RendererImageData

      public RendererImageData(ModelImage kImage)
      Constructor to setup renderer image data associated with specified 3D volume.
      Parameters:
      kImage - ModelImage Input volume.

  • Method Details

    • disposeLocal

      public void disposeLocal()
      Clean up memory.

    • updateRenderer

      public boolean updateRenderer(Renderer kRayTracer, ModelLUT kLUT, TransferFunction transferFunction, ViewJComponentVolOpacity kOpacityGradMag, int iTimeSlice, boolean bUpdatedTimeSlice, boolean bUpdatedLut, boolean bForceShow)
      Update the data for the intensity-based color mapped image.
      Parameters:
      kRayTracer - Renderer Used to renderer the ray traced image.
      kLUT - ModelLUT Input color map definition.
      transferFunction - int[] Input intensity opacity map definition
      kOpacityGradMag - ViewJComponentVolOpacity Input gradient magnitude opacity map (optional by specifying a null reference).
      iTimeSlice - int Current time slice of data in the volume.
      bUpdatedTimeSlice - boolean Flag set if time slice is different.
      bUpdatedLut - boolean Flag set if color map definition is different.
      bForceShow - boolean Flag set if the color mapping must be performed even if nothing else changed.
      Returns:
      boolean True if renderer is up-to-date; false if an error occurred.

    • updateRenderer

      public boolean updateRenderer(Renderer kRayTracer, ModelRGB kIntensityRGB, JPanelVolOpacityRGB volOpacityObj, int iTimeSlice, boolean bUpdatedTimeSlice, boolean bForceShow)
      Deprecated.
      Update the data for the ARGB color image.
      Parameters:
      kRayTracer - Renderer Used to renderer the ray traced image.
      kIntensityRGB - ModelRGB Input transfer function for each RGB channel.
      volOpacityObj - image opacity histogram reference.
      iTimeSlice - int Current time slice of data in the volume.
      bUpdatedTimeSlice - boolean Flag set if time slice is different.
      bForceShow - boolean Flag set if the color mapping must be performed even if nothing else changed.
      Returns:
      boolean True if renderer is up-to-date; false if an error occurred.
      See Also:

    • updateRenderer

      public boolean updateRenderer(Renderer kRayTracer, ModelRGB kIntensityRGB, JPanelVolumeOpacity volOpacityObj, int iTimeSlice, boolean bUpdatedTimeSlice, boolean bForceShow)

    • finalize

      protected void finalize() throws Throwable
      Calls dispose.
      Overrides:
      finalize in class Object
      Throws:
      Throwable - DOCUMENT ME!

    • computeImageBytes

      private void computeImageBytes(float[] afData, TransferFunction transferFunction)
      Given an intensity volume and opacity map, fill in the byte and alpha values for each voxel.
      Parameters:
      afData - float[] Input array of voxel intensity values.
      transferFunction - int[] Input opacity map to apply to values.

    • computeImageBytes

      private void computeImageBytes(float[] afData, TransferFunction transferFunction, ModelLUT kModelLut)
      Given an intensity volume, opacity map, and color map, fill in the byte red, green, blue, and alpha values for each voxel.
      Parameters:
      afData - float[] Input array of voxel intensity values.
      transferFunction - int[] Input opacity map to apply to values.
      kModelLut - ModelLUT Input color map to apply to values.

    • computeImageBytes

      private void computeImageBytes(float[] afData, ModelRGB kIntensityRGB, RendererMapColor kMapColorToIntensity, JPanelVolOpacityRGB volOpacityObj)
      Deprecated.
      Given an RGB volume, a map from RGB to intensity, and an opacity map, fill in the RGB byte and alpha values for each voxel.
      Parameters:
      afData - float[] Input array of voxel ARGB channel values interleaved.
      kIntensityRGB - ModelRGB Input transfer function for each RGB channel.
      kMapColorToIntensity - RendererMapColor Map to convert RGB channel valeus to intensity.
      volOpacityObj - opacity map to apply to values.
      See Also:

    • computeImageBytes

      private void computeImageBytes(float[] afData, ModelRGB kIntensityRGB, RendererMapColor kMapColorToIntensity, JPanelVolumeOpacity volOpacityObj)

    • createImageNormals

      private javax.vecmath.Vector3f[] createImageNormals(float[] afData)
      Create array of normal vectors corresponding to the voxels in the volume. The normal vector is computed based on the gradient of the volume intensity values.
      Parameters:
      afData - float[] Input array of voxel values.
      Returns:
      DOCUMENT ME!

    • modulateAlphaImageBytes

      private void modulateAlphaImageBytes(float[] afData, TransferFunction transferFunction)
      Given a single value volume and opacity map, modulate the alpha channel values for each value.
      Parameters:
      afData - float[] Input array of voxel values.
      transferFunction - int[] Input opacity map to apply to values.

    • modulateAlphaImageBytes

      private void modulateAlphaImageBytes(float[] afData, RendererMapColor kMapColorToIntensity, ModelRGB kOpacityRGB)
      Given an RGB value volume and opacity map for each channel, modulate the alpha channel values for each value.
      Parameters:
      afData - float[] Input array of voxel values.
      kMapColorToIntensity - RendererMapColor Map to convert RGB channel valeus to intensity.
      kOpacityRGB - ModelRGB Input opacity map to apply to values.