java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.filters.AlgorithmLocalVariance

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmLocalVariance
extends AlgorithmBase
```

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type Field Description

private boolean do25D

private boolean entireImage

private int halfK
- Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped
- Fields inherited from class java.lang.Thread
  MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmLocalVariance(ModelImage destImg, ModelImage srcImg, int kernelSize, boolean do25D, boolean entireImage)`	Constructor for 3D images in which changes are placed in a predetermined destination image.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

private void run2D()

private void run3D()

void runAlgorithm()
Starts the algorithm.
- Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
- Methods inherited from class java.lang.Thread
  activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield
- Methods inherited from class java.lang.Object
  equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - entireImage
```
private boolean entireImage
```
  - halfK
```
private int halfK
```
  - do25D
```
private boolean do25D
```
- Constructor Detail
  - AlgorithmLocalVariance
```
public AlgorithmLocalVariance(ModelImage destImg,
                              ModelImage srcImg,
                              int kernelSize,
                              boolean do25D,
                              boolean entireImage)
```
    Constructor for 3D images in which changes are placed in a predetermined destination image.
    
    Parameters:
    
    destImg - Image model where result image is stored.
    
    srcImg - Source image model.
    
    kernelSize - Kernel size: dimension of the kernel (ie., 5 = 5x5, 7 = 7x7, 9 = 9x9, etc.).
    
    do25D - Each slice in a volume image is filtered separately (when true), else the volume will use a kernel with 3 dimensions.
    
    maskFlag - Flag that indicates that the mean filtering will be performed for the whole image if equal to true.
- Method Detail
  - runAlgorithm
```
public void runAlgorithm()
```
    Starts the algorithm.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase
  - run2D
```
private void run2D()
```
  - run3D
```
private void run3D()
```

Modifier and Type	Field	Description
`private boolean`	`do25D`
`private boolean`	`entireImage`
`private int`	`halfK`

Modifier and Type	Method	Description
`private void`	`run2D()`
`private void`	`run3D()`
`void`	`runAlgorithm()`	Starts the algorithm.

Class AlgorithmLocalVariance

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

entireImage

halfK

do25D

Constructor Detail

AlgorithmLocalVariance

Method Detail

runAlgorithm

run2D

run3D