Package gov.nih.mipav.view.renderer.WildMagic.DTI_FrameWork

Class JPanelDTIParametersPanel

  • All Implemented Interfaces:
    java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener, javax.swing.RootPaneContainer, javax.swing.WindowConstants
    public class JPanelDTIParametersPanel
extends JInterfaceBase
implements javax.swing.event.ListSelectionListener, javax.swing.event.ChangeListener
    See Also:
    Serialized Form

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description
      (package private) class  JPanelDTIParametersPanel.CancelListener
      Cancel the color dialog, change nothing.
      (package private) class  JPanelDTIParametersPanel.OkColorListener
      Pick up the selected color and call method to change the fiber bundle color.
      private class  JPanelDTIParametersPanel.VOIParams  

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)  
      void add3DVOI​(java.lang.String kVOIName, SurfaceState kSurfaceState, VolumeSurface kSurface)  
      void addTract()
      Updates the tract list user-interface.
      private void addTract​(VOIContour kTract, int iDimX, int iDimY, int iDimZ)
      Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
      private void calcTracts​(VOIBaseVector[] tracksList, int index, int xMin, int xMax, int yMin, int yMax, int zMin, int zMax, ModelImage fAImage, ViewJProgressBar kProgressBar)  
      void closeFiberTractGroup()
      Called after a mouse drag on mouse release, when the user has drawn tracks interactively and then finishes.
      private void createNewTracts()  
      private javax.swing.JPanel createTractDialog()
      Creates the user-interface for the Fiber Bundle Tract dialog.
      private javax.swing.JPanel createTractPanel()
      Creates the user-interface for the Fiber Bundle Tract panel.
      void diplayTract​(int iX, int iY, int iZ)
      Constructs the Fiber Bundle Tracts from the dtiImage and the eigenImage parameters.
      private VOIContour diplayTract​(int iX, int iY, int iZ, int iDimX, int iDimY, int iDimZ, boolean bUseSizeLimit)  
      void disposeLocal()
      Dispose memory.
      private void extractGroupAndSize​(java.lang.String kName, int[] values)  
      javax.swing.JPanel getMainPanel()
      Get the main control Panel.
      private int getMinUnused​(java.util.Vector<java.lang.Integer> kBundleList)
      Gets a new fiber bundle index.
      private void invokeDisplayFunction()  
      private void loadPolyline()  
      void remove3DVOI​(java.lang.String kVOIName)  
      private void removePolyline()
      Removes the fiber bundle from the GPUVolumeRender and JPanelSurface.
      void resizePanel​(int panelWidth, int frameHeight)
      Resizing the control panel with ViewJFrameVolumeView's frame width and height.
      private void savePolyline()  
      private void setColor​(java.awt.Color color)
      This is called when the user chooses a new color for the fiber bundle.
      void stateChanged​(javax.swing.event.ChangeEvent e)  
      private boolean testTrack​(VOIContour kTrack)  
      private boolean testTrack​(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)  
      private boolean testTrack​(WildMagic.LibFoundation.Mathematics.Vector3f kP0, WildMagic.LibFoundation.Mathematics.Vector3f kP1)  
      private void traceTract2​(VOIContour kTract, WildMagic.LibFoundation.Mathematics.Vector3f kStart, WildMagic.LibFoundation.Mathematics.Vector3f kDir, ModelImage eigenImage, ModelImage eigenValueImage, ModelImage kFAImage, ModelImage kDTIImage, boolean bDir)  
      private void updateCurrentGroup()
      Updates the number of fiber bundle tract groups.
      void valueChanged​(javax.swing.event.ListSelectionEvent kEvent)  

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • m_kTractList

        private javax.swing.JList m_kTractList
        The list box in the dialog for fiber bundle tracts.

      • m_kVOIList

        private javax.swing.JList m_kVOIList
        The list box in the dialog for 3D VOIs.

      • m_kColorButton

        private javax.swing.JButton m_kColorButton
        Color button for changing the color of the fiber bundles.

      • m_kUseVolumeColor

        private javax.swing.JCheckBox m_kUseVolumeColor
        Checkbox for turning on/off volume color for the polylines.

      • m_kUseEllipsoids

        private javax.swing.JCheckBox m_kUseEllipsoids
        Checkbox for switching between polylines and ellipsoids.

      • m_kDisplaySlider

        private javax.swing.JSlider m_kDisplaySlider
        User-control over the number of glyphs displayed in GPUVolumeRender

      • m_kSliderLabel

        private javax.swing.JLabel m_kSliderLabel

      • m_kUseVOICheck

        private javax.swing.JCheckBox m_kUseVOICheck
        When selected, only tracts that intersect the VOI are displayed.

      • m_kGroupList

        private java.util.Vector<java.lang.Integer> m_kGroupList
        Keeps track of the groups of polylines loaded.

      • m_iCurrentGroup

        private int m_iCurrentGroup
        Number of currently loaded fiber bundle groups.

      • m_iCurrentTrackCount

        private int m_iCurrentTrackCount

      • m_kFAMinThreshold

        private javax.swing.JTextField m_kFAMinThreshold

      • m_kFAMaxThreshold

        private javax.swing.JTextField m_kFAMaxThreshold

      • m_kMaxAngle

        private javax.swing.JTextField m_kMaxAngle

      • m_kMinLength

        private javax.swing.JTextField m_kMinLength

      • m_kMaxLength

        private javax.swing.JTextField m_kMaxLength

      • m_kVoxelStepsize

        private javax.swing.JTextField m_kVoxelStepsize

      • displayMode

        private int displayMode

      • Polylines

        private static int Polylines

      • Ellipsoids

        private static int Ellipsoids

      • Tubes

        private static int Tubes

      • Cylinders

        private static int Cylinders

      • Arrows

        private static int Arrows

      • m_kCInclude

        private WildMagic.LibFoundation.Mathematics.ColorRGB m_kCInclude

      • m_kCExclude

        private WildMagic.LibFoundation.Mathematics.ColorRGB m_kCExclude

      • m_kCIgnore

        private WildMagic.LibFoundation.Mathematics.ColorRGB m_kCIgnore

      • m_kInclude

        private javax.swing.JRadioButton m_kInclude

      • m_kExclude

        private javax.swing.JRadioButton m_kExclude

      • m_kIgnore

        private javax.swing.JRadioButton m_kIgnore

      • m_fFAMin

        private float m_fFAMin

      • m_fFAMax

        private float m_fFAMax

      • m_fMaxAngle

        private float m_fMaxAngle

      • m_iMinTractLength

        private int m_iMinTractLength

      • m_iMaxTractLength

        private int m_iMaxTractLength

      • glyphsList

        private javax.swing.JComboBox glyphsList
        list to hold the glyphs type name

      • m_kColorChooser

        private ViewJColorChooser m_kColorChooser
        Color chooser for when the user wants to change the color of the fiber bundle tracts.

      • m_fFraction

        private float m_fFraction

      • m_kCurrentStartList

        private java.util.Vector<WildMagic.LibFoundation.Mathematics.Vector3f> m_kCurrentStartList

      • m_iDimX

        private int m_iDimX

      • m_iDimY

        private int m_iDimY

      • m_iDimZ

        private int m_iDimZ

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener

      • closeFiberTractGroup

        public void closeFiberTractGroup()
        Called after a mouse drag on mouse release, when the user has drawn tracks interactively and then finishes.

      • addTract

        public void addTract()
        Updates the tract list user-interface.

      • extractGroupAndSize

        private void extractGroupAndSize​(java.lang.String kName,
                                 int[] values)

      • diplayTract

        public void diplayTract​(int iX,
                        int iY,
                        int iZ)
        Constructs the Fiber Bundle Tracts from the dtiImage and the eigenImage parameters. The fiber bundles are output to a file specified by the user.
        Parameters:
        dtiImage - Diffusion Tensor Image.
        eigenImage - EigenVector Image.

      • disposeLocal

        public void disposeLocal()
        Dispose memory.

      • getMainPanel

        public javax.swing.JPanel getMainPanel()
        Get the main control Panel.
        Overrides:
        getMainPanel in class JInterfaceBase
        Returns:
        mainPanel main control panel

      • remove3DVOI

        public void remove3DVOI​(java.lang.String kVOIName)

      • resizePanel

        public void resizePanel​(int panelWidth,
                        int frameHeight)
        Resizing the control panel with ViewJFrameVolumeView's frame width and height.
        Parameters:
        panelWidth - DOCUMENT ME!
        frameHeight - DOCUMENT ME!

      • stateChanged

        public void stateChanged​(javax.swing.event.ChangeEvent e)
        Specified by:
        stateChanged in interface javax.swing.event.ChangeListener
        Parameters:
        e - Event that triggered this function.

      • valueChanged

        public void valueChanged​(javax.swing.event.ListSelectionEvent kEvent)
        Specified by:
        valueChanged in interface javax.swing.event.ListSelectionListener

      • addTract

        private void addTract​(VOIContour kTract,
                      int iDimX,
                      int iDimY,
                      int iDimZ)
        Adds a fiber bundle tract to the GPUVolumeRender and JPanelSurface.
        Parameters:
        kTract - list of voxels in the fiber bundle.
        iVQuantity - number of voxels in the fiber bundle.
        iDimX - the x-dimensions of the DTI image used to create the tract.
        iDimY - the y-dimensions of the DTI image used to create the tract.
        iDimZ - the z-dimensions of the DTI image used to create the tract.

      • createNewTracts

        private void createNewTracts()

      • calcTracts

        private void calcTracts​(VOIBaseVector[] tracksList,
                        int index,
                        int xMin,
                        int xMax,
                        int yMin,
                        int yMax,
                        int zMin,
                        int zMax,
                        ModelImage fAImage,
                        ViewJProgressBar kProgressBar)

      • createTractDialog

        private javax.swing.JPanel createTractDialog()
        Creates the user-interface for the Fiber Bundle Tract dialog.
        Returns:
        JPanel containing the user-interface for the Fiber Bundle Tract dialog.

      • createTractPanel

        private javax.swing.JPanel createTractPanel()
        Creates the user-interface for the Fiber Bundle Tract panel.
        Returns:
        JPanel containing the user-interface for the Fiber Bundle Tract panel.

      • diplayTract

        private VOIContour diplayTract​(int iX,
                               int iY,
                               int iZ,
                               int iDimX,
                               int iDimY,
                               int iDimZ,
                               boolean bUseSizeLimit)

      • getMinUnused

        private int getMinUnused​(java.util.Vector<java.lang.Integer> kBundleList)
        Gets a new fiber bundle index.
        Parameters:
        kBundleList - list of fiber bundles.

      • invokeDisplayFunction

        private void invokeDisplayFunction()

      • removePolyline

        private void removePolyline()
        Removes the fiber bundle from the GPUVolumeRender and JPanelSurface.

      • loadPolyline

        private void loadPolyline()

      • savePolyline

        private void savePolyline()

      • setColor

        private void setColor​(java.awt.Color color)
        This is called when the user chooses a new color for the fiber bundle. It changes the color of the fiber bundle.
        Parameters:
        color - Color to change fiber bundle to.

      • traceTract2

        private void traceTract2​(VOIContour kTract,
                         WildMagic.LibFoundation.Mathematics.Vector3f kStart,
                         WildMagic.LibFoundation.Mathematics.Vector3f kDir,
                         ModelImage eigenImage,
                         ModelImage eigenValueImage,
                         ModelImage kFAImage,
                         ModelImage kDTIImage,
                         boolean bDir)

      • updateCurrentGroup

        private void updateCurrentGroup()
        Updates the number of fiber bundle tract groups.

      • testTrack

        private boolean testTrack​(VOIContour kTrack)

      • testTrack

        private boolean testTrack​(WildMagic.LibFoundation.Mathematics.Vector3f kPoint)

      • testTrack

        private boolean testTrack​(WildMagic.LibFoundation.Mathematics.Vector3f kP0,
                          WildMagic.LibFoundation.Mathematics.Vector3f kP1)