Package gov.nih.mipav.model.algorithms

Class StochasticForests.DataSparse

java.lang.Object

gov.nih.mipav.model.algorithms.StochasticForests.Data

gov.nih.mipav.model.algorithms.StochasticForests.DataSparse

Enclosing class:

StochasticForests

private class StochasticForests.DataSparse
extends StochasticForests.Data

Field Summary

Fields

Modifier and Type	Field	Description
private StochasticForests.SparseMatrix	data

Fields inherited from class gov.nih.mipav.model.algorithms.StochasticForests.Data

externalData, i, index_data, is_ordered_variable, max_num_unique_values, no_split_variables, num_cols, num_cols_no_snp, num_rows, num_rows_rounded, permuted_sampleIDs, snp_data, unique_data_values, variable_names

Constructor Summary

Constructors

Constructor	Description
DataSparse()
DataSparse(StochasticForests.SparseMatrix data, Vector<String> variable_names, int num_rows, int num_cols)

Method Summary

Modifier and Type	Method	Description
void	dispose()
double	get(int row, int col)
void	reserveMemory()
void	set(int col, int row, double value, boolean[] error)

Methods inherited from class gov.nih.mipav.model.algorithms.StochasticForests.Data

addNoSplitVariable, addSnpData, getAllValues, getIndex, getIsOrderedVariable, getMaxNumUniqueValues, getMinMaxValues, getNoSplitVariables, getNumCols, getNumRows, getNumUniqueDataValues, getPermutedSampleID, getUniqueDataValue, getUnpermutedVarID, getVariableID, getVariableNames, isOrderedVariable, loadFromFile, loadFromFileOther, permuteSampleIDs, setIsOrderedVariable, setIsOrderedVariableString, sort

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

data

private StochasticForests.SparseMatrix data

Constructor Details

DataSparse

public DataSparse()

DataSparse

public DataSparse(StochasticForests.SparseMatrix data,
 Vector<String> variable_names,
 int num_rows,
 int num_cols)

Method Details

dispose

public void dispose()

Overrides:

dispose in class StochasticForests.Data

get

public double get(int row,
 int col)

Specified by:

get in class StochasticForests.Data

reserveMemory

public void reserveMemory()

Specified by:

reserveMemory in class StochasticForests.Data

set

public void set(int col,
 int row,
 double value,
 boolean[] error)

Specified by:

set in class StochasticForests.Data