Package gov.nih.mipav.model.file

Class FileVista

java.lang.Object

gov.nih.mipav.model.file.FileBase

gov.nih.mipav.model.file.FileVista

public class FileVista
extends FileBase

Author:

pandyan Vista format reader and writer Spec: http://static.cbs.mpg.de/lipsia/START/index3.html 2/1/2011

Field Summary

Fields

Modifier and Type	Field	Description
static final String[]	EXTENSIONS	The extensions of VISTA file.
private String	fileDir	file name and file dir
private FileInfoVista	fileInfo	FileInfo Vista
private String	fileName	file name and file dir
private ModelImage	image	image
private long	offset	offset to image data

Fields inherited from class gov.nih.mipav.model.file.FileBase

BIG_ENDIAN, bitsPerPixel, fileNames, LITTLE_ENDIAN, pBarVisible, raFile, READ, READ_WRITE

Constructor Summary

Constructors

Constructor	Description
FileVista(String fileName, String fileDir)	constructor

Method Summary

Modifier and Type	Method	Description
FileInfoVista	getFileInfo()
boolean	readHeader(String imageFileName, String fileDir)	reads the header
ModelImage	readImage()	reads the image
boolean	writeHeader(ModelImage image, FileRaw rawFile, ArrayList<JTextField> vistaParamFields)	writes the header
void	writeImage(ModelImage image, FileWriteOptions options, ArrayList<JTextField> vistaParamFields)	writes the image

Methods inherited from class gov.nih.mipav.model.file.FileBase

addProgressChangeListener, bytesToDouble, bytesToFloat, bytesToInt, bytesToShort, doubleToBytes, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, floatToBytes, getBufferDouble, getBufferFloat, getBufferInt, getBufferLong, getBufferShort, getBufferUShort, getDataType, getDouble, getFloat, getInt, getLong, getProgressChangeListeners, getRaFile, getSignedShort, getString, getUInt, getUnsignedByte, getUnsignedShort, intToBytes, isBigEndian, isProgressBarVisible, linkProgress, longToBytes, readDouble, readFloat, readInt, readLong, readShort, readString, readUnsignedShort, removeProgressChangeListener, setBigEndian, setBufferFloat, setBufferInt, setBufferLong, setBufferShort, setBufferString, setDataType, setEndianess, shortToBytes, writeBytes, writeDouble, writeFloat, writeInt, writeLong, writeShort

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

EXTENSIONS

public static final String[] EXTENSIONS

The extensions of VISTA file.

fileInfo

private FileInfoVista fileInfo

FileInfo Vista

offset

private long offset

offset to image data

image

private ModelImage image

image

fileName

private String fileName

file name and file dir

fileDir

private String fileDir

file name and file dir

Constructor Details

FileVista

public FileVista(String fileName,
 String fileDir)

constructor

Parameters:

fileName -

fileDir -

Method Details

readHeader

public boolean readHeader(String imageFileName,
 String fileDir)
                   throws IOException

reads the header

Parameters:

imageFileName -

fileDir -

Returns:

boolean - if header could be read

Throws:

IOException

readImage

public ModelImage readImage()
                     throws IOException,
OutOfMemoryError

reads the image

Returns:

Throws:

IOException

OutOfMemoryError

getFileInfo

public FileInfoVista getFileInfo()

writeHeader

public boolean writeHeader(ModelImage image,
 FileRaw rawFile,
 ArrayList<JTextField> vistaParamFields)
                    throws IOException

writes the header

Parameters:

image -

rawFile -

vistaParamFields -

Returns:

Throws:

IOException

writeImage

public void writeImage(ModelImage image,
 FileWriteOptions options,
 ArrayList<JTextField> vistaParamFields)
                throws IOException

writes the image

Parameters:

image -

options -

vistaParamFields -

Throws:

IOException