Package gov.nih.mipav.model.algorithms

Class SymmsIntegralMapping

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.SymmsIntegralMapping

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class SymmsIntegralMapping
extends AlgorithmBase

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) class	SymmsIntegralMapping.qaws

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
private double	A1
private double[]	A1COF
private double[]	ACOEF
private double[]	ACOFC
private double[]	AICOC
private double[]	AICOF
private double[]	AQCOF
private int[]	ARCTY
private int[]	AXION
private double	B1
private double[]	B1COF
private double[]	BCFSN
private double[]	BCOEF
private double[]	BCOFC
private double	BETA
private double[][]	BFSNC
private double[]	BICOC
private double[]	BICOF
(package private) Vector<Double>	Boundary
private double[]	BQCOF
private double[]	CENSY
private double[]	CENTR
private double[]	COARG
private double[]	COLPR
private double[]	COLSC
(package private) Vector<Double>[]	Contour
private double[]	CQCOF
(package private) String[]	DEFN
private int[]	DGPOC
private int[]	DGPOL
private double[]	DIAG
private double	EPS
private double[]	ERARC
private int	example
private double[]	FACTR
(package private) String	fileDir
private String	FORTFL
private double[]	H0VAL
private double[]	H0VLC
private double[]	HALEN
private int[]	HIOLD
private int[]	HISUB
private int[]	HITES
private double[]	HIVAL
private double[]	HIVLC
private double	HL
private int[]	IBNDS
private int[]	ICOPY
private int[]	IER
private int[]	IGEOM
private boolean	INCST
(package private) Scanner	input
private boolean	INTER
private int[]	IPIVT
private int[]	IQUCA
private int[]	IQUPH
private int[]	ISNCA
private int[]	ISNPH
private int	ISYGP
private double[]	JACIN
private double[]	JAINC
private int[]	JATYP
private int[]	JTYPC
private boolean[]	LCOPY
private boolean[]	LNSEG
private int[]	LOOLD
private int[]	LOQSB
private int[]	LOSUB
private int[]	LOTES
private int[]	LQSBF
private int[]	LQSBG
private int[]	LSUBC
private double[][][]	MATRX
private double	MAXER
private double	MD
private double[]	MIDPT
private final int	MNARC
private int	MNEQN
private int	MNJXS
private int	MNQUA
private int	MNSUA
private int	MQIN1
private int	MQUCA
private int	MQUPH
private int	NARCS
private int[]	NEWDG
private double[]	NEWHL
private boolean[]	NEWQU
private int	NJIND
private int[]	NPPQF
private int[]	NPPQG
private int	NQPTS
private int[]	NQUAD
private int[]	NTX
private boolean[]	NUMDER
private int	OULVL
private double	P0VAL
private int[]	PARNT
private int[]	PGM
private double[]	PHPAS
private boolean[]	PNEWQ
private int[]	PRNSA
private int	PT
private int[]	PTX
private double[]	QCOMW
private double[]	QCOMX
private double[]	QUPTC
private double[]	QUPTS
private double[]	QUWTC
private double[]	QUWTS
(package private) Vector<Double>[]	Ray
private double[]	RCOPY
private boolean	REFLN
private int	RFARC
private double[]	RFARG
private double[]	RGEOM
private double[]	RGM
private double[]	RIGLL
private double[]	RQUPH
private double[]	RSNCA
private double	SCALE
private double[]	SDIAG
private double[][]	SOLNC
private double[]	SOLUN
private double[][]	STAPT
private boolean	SYMTY
private int	TNGQP
private double[]	TOLOU
private double[]	TPPQF
private boolean	traditionalInput
private double[]	TRRAD
private int	TSTNG
private int	TYPE
private double[]	VARGC
private double[]	VTARG
private double[]	WORK
private double[]	WORK2
private double[]	WORKQ
private double[]	WORKT
private double[]	WPPQF
private double[][]	WPPQG
private double[]	XENPT
private double[]	XIDST
private double[][]	XIVAL
private double[][]	ZCOLL
private double[][]	ZPPQF
private double[][]	ZPPQG
private double[]	ZQUCA
private double[]	ZSNCA
private double[][]	zzset

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
SymmsIntegralMapping()
SymmsIntegralMapping(ModelImage destImg, ModelImage srcImg, String FORTFL, boolean SYMTY, boolean REFLN, double[] CENSY, int NARCS, boolean[] NUMDER, int[] ARCTY, double[][] STAPT, int[] PGM, double[] RGM, int[] PTX, int[] NTX, String[] DEFN)

Method Summary

Modifier and Type	Method	Description
private void	ANGLE7(double[] BE, int NA, boolean IN)
private double	ARGIN1(double RT1, double RT2, int PT, double[] DIFF1, double[] DIFF2, double[] ZZ, double LIMIT)
private void	ASONJ7(double ALFA, double BETA, double[] A, double[] B, double[] H, int N)
private void	ASQUC7(double[] AQCOF, double[] BQCOF, double[] CQCOF, double[] JACIN, int NJIND, int NQPTS)
private void	AXION1(int[] AXION, int[] NEWDG, double[] SOLUN, int MDGPO, int TNSUA, int[] DGPOL, int[] LOSUB, int[] HISUB, double[] RIGLL, double LGTOL, boolean[] ACCPT, double[] JACIN, int[] JATYP, int NJIND, double[] NEWHL, double[] ESTOL, int[] IER)
private void	BCFSNG(int TNSUC, int[] DGPOC, int[] JTYPC, int[] LSUBC, double[] H0VLC, double[] JAINC, double[][] BFSNC, double[][] SOLNC)
private void	BCFVTF(double[] BCFSN, double[] VTARG, int[] DGPOL, int[] JATYP, int[] LOSUB, int[] PARNT, int RFARC, int TNSUA, double[] H0VAL, double[] JACIN, double RFARG, double[] SOLUN)
private void	BISNEW(int[] IER, double LL, double TT, double UU, double[] A1COF, double[] ACOEF, double[] B1COF, double[] BCFSN, double[] BCOEF, double BETA, int DEG, double H0VAL, double H1VAL, double[] JACOF, double NEWTL, double SJT, double RRHS, double TOLIW)
private void	BMCANP(double THETA, double[] PHYPT, double[] DERIV, boolean WANTD, boolean WANTM, int[] IER)
private void	BMCAP1(double[] PHYPT, double[] DERIV, double THETA, int NQPTS, int TNSUC, int[] DGPOC, int[] JTYPC, int[] LSUBC, int[] PARNT, int[] PRNSA, double[] A1COC, double[] ACOFC, double[] B1COC, double[] BCOFC, double[] H0VLC, double[] H1VLC, double[] HALEN, double[] JAINC, double[] MIDPT, double[] PHPAS, double THET0, double[] VARGC, double[][] BFSNC, double[] CENTR, double[][] SOLNC, boolean INTER, boolean WANTD, int[] IER)
private void	BMPHC1(int IARC, double[] PHYPT, double[] CANPT, double[] DERIV, int NQPTS, int TNSUA, int[] DGPOL, int[] JATYP, int[] LOSUB, int[] LPQSB, int[] NPPQF, int[] PARNT, double[] A1COF, double[] ACOEF, double[] B1COF, double[] BCFSN, double[] BCOEF, double[] H0VAL, double[] H1VAL, double[] HALEN, double[] JACIN, double[] MIDPT, double[] SOLUN, double[] TPPQF, double[] TRRAD, double[] VTARG, double[][] ZPPQF, boolean INTER, boolean WANTD, int[] IER)
private void	BMPHYC(int IARC, double[] PHYPT, double[] CANPT, double[] DERIV, boolean WANTD, boolean WANTM, int[] IER)
private void	CATPH4(int NPTS, double[][] PHYPT, double[][] CANPT, int NARCS, int NQPTS, int TNSUC, int[] DGPOC, int[] JTYPC, int[] LSUBC, int[] LQSBG, int[] NPPQG, int[] PARNT, int[] PRNSA, double[] A1COC, double[] ACOFC, double[] B1COC, double[] BCOFC, double[] H0VLC, double[] H1VLC, double[] HALEN, double[] JAINC, double LGTOL, double[] MIDPT, double[] PHPAS, double[] QUPTC, double[] QUWTC, double THET0, double[] VARGC, double[][] BFSNC, double[] CENTR, double[] FACTR, double[][] SOLNC, double[][] WPPQG, double[][] ZPPQG, boolean INTER, int[] IER)
private double[]	CCJACS(double[] X, int N, double[] A, double[] B, double H, double[][] CO)
private double[]	CINRAD(int NARCS, int NQPTS, int TNSUA, int[] DGPOL, int[] JATYP, int[] LOSUB, int[] LPQSB, int[] NPPQF, int[] PARNT, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] HALEN, double[] JACIN, double LGTOL, double[] MIDPT, double[] QUPTS, double[] QUWTS, double[] SOLUN, double[] TPPQF, double[] TRRAD, double[] WPPQF, double[] CENTR, double[] FACTR, double[][] ZPPQF, int[] IER)
private double[]	CJACSU(double[] X, int N, double[] A, double[] B, double H, double[] CO)
private void	CNDPLT(boolean[] MAP11, double[] RESMN, double[] UPHYC, double[] UCANP, double CRRES, String[] DASH, String[] NEWD, int[] IER)
private double[]	cos(double[] t)
private void	CPJAC3(int NARCS, int NQPTS, int INDEG, int[] DGPOL, double[] JACIN, double[] ACOEF, double[] BCOEF, double[] DIAG, double[] SDIAG, int[] TNSUA, int[] LOSUB, int[] HISUB, int[] JATYP, int[] PARNT, double[] MIDPT, double[] HALEN, double[] COLPR, double[][] ZCOLL, boolean[] LNSEG, int[] LOOLD, int[] HIOLD, double EPS, int[] IER, boolean INIBT)
private int	CRITCO(int N, double[] POSCO)
private void	CSCAL3(double[] COLSC, int NQPTS, int NJIND, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] QUPTS, double[] QUWTS, double[] JACIN, double[] MU, double[] TT, double[] QQ)
private void	DEJAC7(double[][] ZZ, int NZZ, double BETA, double[] TAU, int MAXDG, int NQUAD, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] REMND, double[] CSCAL, double[] TOL, double[] MAXRM, int[] IER)
private void	DELEG7(double[][] ZZ, int NZZ, double BETA, double[] TAU1, double[] TAU2, boolean T1FXD, int MAXDG, int NQUAD, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] REMND, double[] CSCAL, double[] TOL, double[] MAXRM, int[] IER)
private void	DEPPJ8(double BETA, double[] TAU, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double[] TOL, double[] MAXRM, int NINTS, double DELTA, int[] IER)
private void	DEPPJ9(double[][] ZZ, int NZZ, double BETA, double[] TAU, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double[] TOL, double[] MAXRM, int[] IER)
private void	DEPPL8(double BETA, double[] TAU1, double[] TAU2, boolean T1FXD, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double[] TOL, double[] MAXRM, int NINTS, double DELTA, int[] IER)
private void	DEPPL9(double[][] ZZ, int NZZ, double BETA, double[] TAU1, double[] TAU2, boolean T1FXD, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double[] TOL, double[] MAXRM, boolean FIRST, int[] IER)
private void	DIAGN4(double[] CCAPH, double[] COCAP, double[] COPHC, double[] CPHCA, double[] EXCAP, double[] EXPHC, int[] ICRVS, int[] IER, int[] IPRVS, int[] NASYM, int[] NCRVS, int[] NINFD, int[] NPRVS, int[] NZERD, double[] ARCLN, double[] ASYMP, double[] BCDMN, double[] CORXX, double[] TOTLN, double[] VTARG, boolean[] MAP11, int[] DGPOL, int[] JATYP, int[] LOSUB, int NARCS, int NQPTS, int NXINT, int[] PARNT, int TNSUA, double[] A1COF, double[] ACOEF, double[] B1COF, double[] BCFSN, double[] BCOEF, double[] H0VAL, double[] H1VAL, double[] HALEN, double[] JACIN, double[] MIDPT, double[] SOLUN, double[] QUPTS, double[] QUWTS)
private double	DIAPHY(int NARCS)
private void	DMCANP(int NPTS, double[][] PHYPT, double[][] CANPT, boolean WANTM, int[] IER)
private void	DMPHYC(int NPTS, double[][] PHYPT, double[][] CANPT, boolean WANTM, int[] IER)
private double[]	DPARFN(int IA, double[] TT)
void	DRIVE0()
void	DRIVE1()
private double	DSDT(double X)
private void	EIGSYS(int N, double EPS, double[] D, double[] E, double[] Z, int[] IER)
private double	FNVAL(double X)
private double	GAMMA(double U)
private void	GQCANP(double[] RWORK, int[] IER)
private void	GQPHYC(int MQIN1, double[] RWORK, int[] IER)
private void	HEADER(String TXT, String REDD, RandomAccessFile raFile)
private void	ICOQR1(int NARCS, int NJIND, int NQPTS, int MDGPO, int MQIN1, double AQTOL, double[] QUPTS, double[] QUWTS, double[] JACIN, double[] MIDPT, double[] HALEN, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] COLSC, int[] NQUAD, int[] LOQSB, double[] QCOMX, double[] QCOMW, int MNQUA, double[] TOLOU, double[] MCQER, double[] XENPT, double[][] XIVAL, double[] XIDST, int[] IER)
private String	IERTXT(int IER)
private void	IGNLVL(double[] RIGLL, double[] COLSC, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] JACIN, int NJIND, int NQPTS, int[] IER)
private void	IMTQLH(int N, double[] D, double[] E, int[] IERR)
private void	INVJCO(double[][] SOLNC, double[] A1COF, double AA, double[] ACOEF, double[] ACOFC, double[] B1COF, double BB, double[] BCFSN, double[] BCOEF, double[] BCOFC, double BETA, double BETAC, double[] CENTR, double CONST, int DGPOC, int DGPOL, double H0VAL, double H0VLC, double H1VAL, double HAANG, double HALEN, int[] IER, boolean INTER, double[] JACOF, int JTYPC, double MIDPT, double NEWTL, int NQUAD, int PARNT, double[] QUPTC, double[] QUWTC, double[][] RHOVL, double SJT, double SJTC, double[] SVAL, double TOLIW, double[] TVAL, double[] WORK)
private void	JACANP(double[] RWORK, int[] IER)
private double[]	JACSUC(double X, int N, double[] A, double[] B, double H, double[][] CO)
private double	JACSUM(double X, int N, double[] A, double[] B, double H, double[] CO)
private void	JAPAR7(double[] PP, double X, double[] AA, double[] BB, int N)
private void	JAPHYC()
private void	JCFIM5(int[] DGPOC, int[] IER, int[] JTYPC, int[] LSUBC, double[] PHPAS, int[] PRNSA, double[][] SOLNC, int TNSUC, double[] VARGC, double[] AICOF, double[] ACOEF, double[] ACOFC, double[] BICOF, double[] BCFSN, double[] BCOEF, double[] BCOFC, double[] CENTR, int[] DGPOL, double[] ERARC, double[] H0VAL, double[] H0VLC, double[] HIVAL, double[] HALEN, boolean INTER, double[] JACIN, double[] JAINC, int[] JATYP, double LGTOL, int[] LOSUB, double[] MIDPT, int MNCOF, int MNSUC, int NJIND, int NQPTS, int[] PARNT, double[] QUPTC, double[] QUWTC, double[] RIGLL, double[] SOLUN, double NEWTL, double[] VTARG)
private void	LEVCUR(int NCONT, double[] RADII, int NARGS, double[] THETA, double[] RAD1, double[] RAD2, double[] PSD, double[] MINPD, double[] MAXPD, String[] NEWD, int[] IER)
private double	LGGAM(double X)
private void	LINSEG(boolean[] LNSEG, int NARCS)
private void	LNSY11(double[][][] MATRX, double[] RGTSD, int MNEQN, int NCOLL, int ORDSG, boolean REFLN, int NQPTS, int TNSUA, int[] JATYP, int[] PARNT, int[] DGPOL, int[] LOSUB, int[] HISUB, int[] NQUAD, int[] LOQSB, double TOLNR, double[] MIDPT, double[] HALEN, double[] H0VAL, double[] COLSC, double[] ACOEF, double[] BCOEF, double[] COLPR, double[] QCOMX, double[] QCOMW, double[] CENTR, double[][] ZCOLL, boolean INTER, boolean[] LNSEG, double[] WORK, int[] QIERR, double[] MQERR, double[] JACIN, double[] A1COF, double[] B1COF, double AQTOL, double RQTOL, double[] AQCOF, double[] BQCOF, double[] CQCOF, int[] LOOLD, int[] HIOLD)
private double	MDNBT(double ALFA, double BETA)
private void	OPQUD1(int NJIND, int NQPTS, double[] JACIN, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] AICOF, double[] BICOF, double[] HIVAL, double[] QUPTS, double[] QUWTS, double[] WORK, int[] IER)
private void	OUPTCL(int[] DGPOC, int[] JTYPC, double LGTOL, int[] LSUBC, int NQPTS, int[] PARNT, int[] PRNSA, double[] RIGLL, double[][] SOLNC, int TNSUC, boolean INTER, double INNRAD, int IER)
private double[]	PARFUN(int IA, double[] TT)
void	PARGEN()
private void	PHTCA1(int NPTS, double[][] PHYPT, double[][] CANPT, int NARCS, int NQPTS, int TNSUA, int[] DGPOL, int[] JATYP, int[] LOSUB, int[] LPQSB, int[] NPPQF, int[] PARNT, double[] A1COF, double[] ACOEF, double[] B1COF, double[] BCFSN, double[] BCOEF, double[] H0VAL, double[] H1VAL, double[] HALEN, double[] JACIN, double LGTOL, double[] MIDPT, double[] QUPTS, double[] QUWTS, double[] SOLUN, double[] TPPQF, double[] TRRAD, double[] VTARG, double[] WPPQF, double[] CENTR, double[] FACTR, double[][] ZPPQF, boolean INTER, int[] IER)
private void	POPQF1(int[] NPPQF, int[] LPQSB, int[] TNPQP, double[] TOLOU, double[] TPPQF, double[] TRRAD, double[] WPPQF, double[][] ZPPQF, int MNQUA, int MQIN1, int NARCS, int NINTS, int NQPTS, int TNSUA, int[] DGPOL, int[] JATYP, int[] LOSUB, int[] PARNT, double DELTA, double LGTOL, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] HALEN, double[] JACIN, double[] MIDPT, double[] QUPTS, double[] QUWTS, double[] SOLUN, double[] XENPT, int[] IER)
private void	POPQG1(int[] NPPQG, int[] LPQSB, int[] TNPQP, double[] TOLOU, double[][] WPPQG, double[][] ZPPQG, int MNQUA, int MQIN1, int NARCS, int NINTS, int NQPTS, int TNSUC, int[] DGPOC, int[] JTYPC, int[] LSUBC, double DELTA, double LGTOL, double[] ACOFC, double[] BCOFC, double[] H0VLC, double[] JAINC, double[] QUPTC, double[] QUWTC, double[][] SOLNC, double[] VARGC, double[] XENPT, int[] IER)
private void	PPSBI1(double[] ZZ, double BETA, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double TOLIN, double[] TOLOU, double[] XENPT, int[] QINTS, int MQIN1, int[] IER)
private void	PPSBI7(double DELTA, int NINTS, double BETA, int NQUAD, int DGPOL, double[] ACOEF, double[] BCOEF, double H0VAL, double[][] SOLUN, double TOLIN, double[] TOLOU, double[] XENPT, int[] QINTS, int MQIN1, int[] IER)
private void	PTFUN1(int TYPE, double[][] STAPT, double[] RGM, int NTX, String[] TXT, int CHNL, String CHTT, String VAR, String REDD, RandomAccessFile raFile)
private void	PTFUN2(int TYPE, double[][] STAPT, double[] RGM, int NTX1, String[] TXT1, int NTX2, String[] TXT2, int CHNL, String CHTT, String VAR, String CHIA, boolean NUMDER, String REDD, RandomAccessFile raFile)
private double	PYTHAG(double A, double B)
private void	RECON(int ORDSG, boolean REFLN, int NCOLL, int TNSUA, int[] LOSUB, int[] HISUB, double[] SOLUN)
private void	RESCAL(int NQPTS, int TNSUA, int[] LOSUB, int[] HISUB, int[] JATYP, double[] SOLUN, double[] COLSC)
private void	RHOFN(int[] IER, double[][] RHOVL, double[] ACOEF, double[] BCOEF, double BETA, double BETAC, double[] CENTR, int DGPOL, double H0VAL, double HAANG, double HALEN, boolean INTER, double MIDPT, int NVALS, int PARNT, double SJT, double[] JACOF, double[] SVAL, double[] TVAL)
private void	RSLT71(int[] QIERC, double RCOND, double[] SOLUN, int NEQNS, int[] LOSUB, int[] HISUB, double[] COLSC, int NQPTS, int[] JATYP, int[] PARNT, int TNSUA, boolean INTER, double MQERR, double MCQER, double[] CINFN, int[] ACTIN, int[] NEWDG, int NJIND, double[] JACIN, int[] NQUAD, double[] TOLOU, double LGTOL, int SOLCO)
private void	RSLT72(int[] QIERC, double RCOND, double GAMMA, int NEQNS, int[] DGPOL, int[] JATYP, int[] PARNT, int TNSUA, boolean INTER, double MQERR, double MCQER, int[] ACTIN, int[] NEWDG, int NJIND, int[] NQUAD, double[] TOLOU, double LGTOL, int SOLCO)
private void	RSLT80(double SUPER, double MAXER, double AQTOL, boolean INTER, int NARCS, int ORDSG, int NQPTS, boolean INCST, int INDEG, int RFARC, double RFARG, double[] CENTR, double[] BETA, boolean[] LINEAR, int TSTNG, int OULVL, int[] IBNDS, int MNEQN)
private void	RSLT83(double[] ERARC, int TNSUA, double MXERM, double[] ZMXER, int IMXER, int[] QIERC, int[] PARNT, int ORDSG)
private void	RSLT84(double[] ERMOD, int TNSUA, double MXERM, double[] ZMXER, int IMXER, int[] LOTES, int[] HITES, int[] QIERC, int[] PARNT, int ORDSG)
void	runAlgorithm()	Actually runs the algorithm.
private void	SETIGL(double[] AIGLL, int[] HISUB, int[] JATYP, int[] LOSUB, int NQPTS, double[] RIGLL, int TNSUA)
private double[]	sin(double[] t)
private double	SMNAB(int N, double AL, double BE, double X)
private void	STATS1(double[] SN, int M, double[] A, double[] B, double[] EA, double[][] COV, double[] CONF, int[] IER)
private void	SUBIN7(double[][] ZZ, int NZZ, double BETA, int MAXDG, int NQUAD, double[] AJAC, double[] BJAC, double H0JAC, double[] CSCAL, double TOLIN, double[] TOLOU, double[] XENPT, int[] QINTS, int MQIN1, int[] IER)
private void	SYINF1(int[] ORDRG, int[] ORDSG, double[] RTUNI, double[] U2, boolean REFLN, double[] Z0, double[] Z1, double[] Z2, int[] IER)
private void	TESMD9(double[] ERMOD, double[][] MATRX, double[] SOLUN, int MNEQN, int NCOLL, int NTEST, int NQPTS, int TNSUA, int[] JATYP, int[] PARNT, int[] DGPOL, int[] LOSUB, int[] HISUB, int[] LOTES, int[] HITES, int[] NQUAD, int[] LOQSB, double TOLNR, double[] MIDPT, double[] HALEN, double[] H0VAL, double[] COLSC, double[] ACOEF, double[] BCOEF, double[] TESPR, double[] QCOMX, double[] QCOMW, double[] CENTR, double[][] ZTEST, boolean INTER, boolean[] LNSEG, double[] WORK, int[] QIERR, double[] MQERR, double[] JACIN, double[] A1COF, double[] B1COF, double AQTOL, double RQTOL, double[] AQCOF, double[] BQCOF, double[] CQCOF, double[] MXERM, int[] IMXER, double[] ZMXER, double[] ERARC, int ORDSG, boolean REFLN)
private void	TSJAC3(int[] LOTES, int[] HITES, double[] TESPR, double[][] ZTEST, int NQPTS, int[] NTEST, int ORDSG, int TNSUA, int TSTNG, int[] DGPOL, int[] JATYP, int[] PARNT, double[] AICOF, double[] BICOF, double[] DIAG, double[] HALEN, double[] JACIN, double[] MIDPT, double[] SDIAG, int[] IER)
private void	TSTPLT(double[] MXMIS, double[] MXDIF, double[] PSD, double[] MINPD, double[] MAXPD, int[] IER)
private void	TSTPLT(double[] MXMIS, double[] MXDIF, double[] PSD, double MINPD, double MAXPD)
private void	UPCOQ1(int NARCS, int NJIND, int NQPTS, int MDGPO, int MQIN1, double AQTOL, double[] QUPTS, double[] QUWTS, double[] JACIN, double[] MIDPT, double[] HALEN, double[] ACOEF, double[] BCOEF, double[] H0VAL, double[] COLSC, int[] NQUAD, int[] LOQSB, double[] QCOMX, double[] QCOMW, int MNQUA, double[] TOLOU, double[] MCQER, double[] XENPT, double[][] XIVAL, double[] XIDST, int TNSUA, boolean[] PNEWQ, boolean[] NEWQU, int[] JATYP, int[] PARNT, boolean[] NUQTL, int[] IER)
private void	UPJAC1(int NQPTS, int NJIND, int INDEG, int[] AXION, int[] DGPOL, int[] NEWDG, double[] ACOEF, double[] BCOEF, double[] DIAG, double[] SDIAG, int TNSUA, int MNSUA, int[] LOSUB, int[] HISUB, int[] JATYP, int[] PARNT, double[] MIDPT, double[] HALEN, double[] COLPR, double[][] ZCOLL, boolean[] LNSEG, boolean[] PNEWQ, double EPS, int[] IER, double[] WORK, double[] NEWHL, double[] RCOPY, int[] ICOPY, boolean[] LCOPY, int[] LOOLD, int[] HIOLD)
private void	WRFUN1(int NARCS, double[][] STAPT, int[] ARCTY, int[] PGM, double[] RGM, int[] PTX, int[] NTX, String[] DEFN, int CHNL, String CHIA, String CHTT, String VAR, String REDD, RandomAccessFile raFile, boolean writeReturn)
private void	WRFUN2(int NARCS, int MNARC, double[][] STAPT, int[] ARCTY, int[] PGM, double[] RGM, int[] PTX, int[] NTX, String[] DEFN, int CHNL, String CHIA, String CHTT, String VAR, boolean[] NUMDER, String REDD, RandomAccessFile raFile, boolean writeReturn)
private void	WRHEAD(int I, int CHNL, RandomAccessFile raFile)
private void	WRSYM1(int NARCS, int ORDRG, int ORDSG, double[] RTUNI, double[] U2, double[] CENSY, boolean REFLN, boolean PARFUN, String REDD, int CHNL, RandomAccessFile raFile)
private void	WRSYM2(int NARCS, int ORDRG, double[] CENSY, boolean REFLN, int CHNL, RandomAccessFile raFile)
private void	WRSYM3(int NARCS, int ORDRG, boolean REFLN, int CHN, RandomAccessFile raFile)
private void	WRTAIL(int I, int CHNL, int IER, RandomAccessFile raFile)
double	zabs(double zr, double zi)	zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.
void	zdiv(double ar, double ai, double br, double bi, double[] cr, double[] ci)	complex divide c = a/b.
private double[]	ZDPARF(int I, double[] T)
void	zmlt(double ar, double ai, double br, double bi, double[] cr, double[] ci)	complex multiply c = a * b.
private double[]	ZTOB1(double[] Z, double B1, int JT, boolean IN)

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

fileDir

String fileDir

EPS

private double EPS

FORTFL

private String FORTFL

SYMTY

private boolean SYMTY

REFLN

private boolean REFLN

MNARC

private final int MNARC

See Also:

• Constant Field Values

CENSY

private double[] CENSY

NARCS

private int NARCS

ISYGP

private int ISYGP

RFARC

private int RFARC

RFARG

private double[] RFARG

INCST

private boolean INCST

TSTNG

private int TSTNG

MAXER

private double MAXER

OULVL

private int OULVL

MNSUA

private int MNSUA

NQPTS

private int NQPTS

MNEQN

private int MNEQN

MNJXS

private int MNJXS

MQIN1

private int MQIN1

MNQUA

private int MNQUA

IBNDS

private int[] IBNDS

MATRX

private double[][][] MATRX

IER

private int[] IER

NUMDER

private boolean[] NUMDER

ARCTY

private int[] ARCTY

STAPT

private double[][] STAPT

PGM

private int[] PGM

RGM

private double[] RGM

PTX

private int[] PTX

NTX

private int[] NTX

DEFN

String[] DEFN

traditionalInput

private boolean traditionalInput

input

Scanner input

zzset

private double[][] zzset

IGEOM

private int[] IGEOM

PARNT

private int[] PARNT

RGEOM

private double[] RGEOM

HALEN

private double[] HALEN

MIDPT

private double[] MIDPT

VTARG

private double[] VTARG

ISNPH

private int[] ISNPH

DGPOL

private int[] DGPOL

JATYP

private int[] JATYP

LOSUB

private int[] LOSUB

NJIND

private int NJIND

TNGQP

private int TNGQP

ACOEF

private double[] ACOEF

BCOEF

private double[] BCOEF

AICOF

private double[] AICOF

BICOF

private double[] BICOF

QUPTS

private double[] QUPTS

QUWTS

private double[] QUWTS

H0VAL

private double[] H0VAL

HIVAL

private double[] HIVAL

JACIN

private double[] JACIN

ERARC

private double[] ERARC

BCFSN

private double[] BCFSN

SOLUN

private double[] SOLUN

IPIVT

private int[] IPIVT

LOQSB

private int[] LOQSB

NQUAD

private int[] NQUAD

HISUB

private int[] HISUB

LOTES

private int[] LOTES

HITES

private int[] HITES

AXION

private int[] AXION

NEWDG

private int[] NEWDG

ICOPY

private int[] ICOPY

LOOLD

private int[] LOOLD

HIOLD

private int[] HIOLD

WORK2

private double[] WORK2

COLPR

private double[] COLPR

A1COF

private double[] A1COF

B1COF

private double[] B1COF

TOLOU

private double[] TOLOU

XIDST

private double[] XIDST

XENPT

private double[] XENPT

QCOMX

private double[] QCOMX

QCOMW

private double[] QCOMW

RCOPY

private double[] RCOPY

NEWHL

private double[] NEWHL

AQCOF

private double[] AQCOF

BQCOF

private double[] BQCOF

CQCOF

private double[] CQCOF

COLSC

private double[] COLSC

RIGLL

private double[] RIGLL

WORK

private double[] WORK

DIAG

private double[] DIAG

SDIAG

private double[] SDIAG

WORKT

private double[] WORKT

WORKQ

private double[] WORKQ

ZCOLL

private double[][] ZCOLL

XIVAL

private double[][] XIVAL

NEWQU

private boolean[] NEWQU

LCOPY

private boolean[] LCOPY

PNEWQ

private boolean[] PNEWQ

LNSEG

private boolean[] LNSEG

CENTR

private double[] CENTR

INTER

private boolean INTER

BETA

private double BETA

A1

private double A1

B1

private double B1

P0VAL

private double P0VAL

SCALE

private double SCALE

TYPE

private int TYPE

IQUPH

private int[] IQUPH

LQSBF

private int[] LQSBF

NPPQF

private int[] NPPQF

MQUPH

private int MQUPH

RQUPH

private double[] RQUPH

TPPQF

private double[] TPPQF

TRRAD

private double[] TRRAD

WPPQF

private double[] WPPQF

FACTR

private double[] FACTR

ZPPQF

private double[][] ZPPQF

ISNCA

private int[] ISNCA

DGPOC

private int[] DGPOC

JTYPC

private int[] JTYPC

LSUBC

private int[] LSUBC

PRNSA

private int[] PRNSA

RSNCA

private double[] RSNCA

ACOFC

private double[] ACOFC

BCOFC

private double[] BCOFC

AICOC

private double[] AICOC

BICOC

private double[] BICOC

QUPTC

private double[] QUPTC

QUWTC

private double[] QUWTC

H0VLC

private double[] H0VLC

HIVLC

private double[] HIVLC

JAINC

private double[] JAINC

COARG

private double[] COARG

PHPAS

private double[] PHPAS

VARGC

private double[] VARGC

ZSNCA

private double[] ZSNCA

BFSNC

private double[][] BFSNC

SOLNC

private double[][] SOLNC

MQUCA

private int MQUCA

IQUCA

private int[] IQUCA

LQSBG

private int[] LQSBG

NPPQG

private int[] NPPQG

ZQUCA

private double[] ZQUCA

WPPQG

private double[][] WPPQG

ZPPQG

private double[][] ZPPQG

PT

private int PT

MD

private double MD

HL

private double HL

Contour

Vector<Double>[] Contour

Ray

Vector<Double>[] Ray

Boundary

Vector<Double> Boundary

example

private int example

Constructor Details

SymmsIntegralMapping

public SymmsIntegralMapping()

SymmsIntegralMapping

public SymmsIntegralMapping(ModelImage destImg,
 ModelImage srcImg,
 String FORTFL,
 boolean SYMTY,
 boolean REFLN,
 double[] CENSY,
 int NARCS,
 boolean[] NUMDER,
 int[] ARCTY,
 double[][] STAPT,
 int[] PGM,
 double[] RGM,
 int[] PTX,
 int[] NTX,
 String[] DEFN)

Method Details

runAlgorithm

public void runAlgorithm()

Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

PARGEN

public void PARGEN()

DRIVE0

public void DRIVE0()

DRIVE1

public void DRIVE1()

HEADER

private void HEADER(String TXT,
 String REDD,
 RandomAccessFile raFile)

SYINF1

private void SYINF1(int[] ORDRG,
 int[] ORDSG,
 double[] RTUNI,
 double[] U2,
 boolean REFLN,
 double[] Z0,
 double[] Z1,
 double[] Z2,
 int[] IER)

PARFUN

private double[] PARFUN(int IA,
 double[] TT)

DPARFN

private double[] DPARFN(int IA,
 double[] TT)

WRHEAD

private void WRHEAD(int I,
 int CHNL,
 RandomAccessFile raFile)

WRTAIL

private void WRTAIL(int I,
 int CHNL,
 int IER,
 RandomAccessFile raFile)

IERTXT

private String IERTXT(int IER)

WRSYM1

private void WRSYM1(int NARCS,
 int ORDRG,
 int ORDSG,
 double[] RTUNI,
 double[] U2,
 double[] CENSY,
 boolean REFLN,
 boolean PARFUN,
 String REDD,
 int CHNL,
 RandomAccessFile raFile)

WRFUN1

private void WRFUN1(int NARCS,
 double[][] STAPT,
 int[] ARCTY,
 int[] PGM,
 double[] RGM,
 int[] PTX,
 int[] NTX,
 String[] DEFN,
 int CHNL,
 String CHIA,
 String CHTT,
 String VAR,
 String REDD,
 RandomAccessFile raFile,
 boolean writeReturn)

PTFUN1

private void PTFUN1(int TYPE,
 double[][] STAPT,
 double[] RGM,
 int NTX,
 String[] TXT,
 int CHNL,
 String CHTT,
 String VAR,
 String REDD,
 RandomAccessFile raFile)

WRSYM2

private void WRSYM2(int NARCS,
 int ORDRG,
 double[] CENSY,
 boolean REFLN,
 int CHNL,
 RandomAccessFile raFile)

WRFUN2

private void WRFUN2(int NARCS,
 int MNARC,
 double[][] STAPT,
 int[] ARCTY,
 int[] PGM,
 double[] RGM,
 int[] PTX,
 int[] NTX,
 String[] DEFN,
 int CHNL,
 String CHIA,
 String CHTT,
 String VAR,
 boolean[] NUMDER,
 String REDD,
 RandomAccessFile raFile,
 boolean writeReturn)

PTFUN2

private void PTFUN2(int TYPE,
 double[][] STAPT,
 double[] RGM,
 int NTX1,
 String[] TXT1,
 int NTX2,
 String[] TXT2,
 int CHNL,
 String CHTT,
 String VAR,
 String CHIA,
 boolean NUMDER,
 String REDD,
 RandomAccessFile raFile)

WRSYM3

private void WRSYM3(int NARCS,
 int ORDRG,
 boolean REFLN,
 int CHN,
 RandomAccessFile raFile)

TSTPLT

private void TSTPLT(double[] MXMIS,
 double[] MXDIF,
 double[] PSD,
 double MINPD,
 double MAXPD)

LINSEG

private void LINSEG(boolean[] LNSEG,
 int NARCS)

ZDPARF

private double[] ZDPARF(int I,
 double[] T)

JAPHYC

private void JAPHYC()

ANGLE7

private void ANGLE7(double[] BE,
 int NA,
 boolean IN)

RSLT80

private void RSLT80(double SUPER,
 double MAXER,
 double AQTOL,
 boolean INTER,
 int NARCS,
 int ORDSG,
 int NQPTS,
 boolean INCST,
 int INDEG,
 int RFARC,
 double RFARG,
 double[] CENTR,
 double[] BETA,
 boolean[] LINEAR,
 int TSTNG,
 int OULVL,
 int[] IBNDS,
 int MNEQN)

OPQUD1

private void OPQUD1(int NJIND,
 int NQPTS,
 double[] JACIN,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] AICOF,
 double[] BICOF,
 double[] HIVAL,
 double[] QUPTS,
 double[] QUWTS,
 double[] WORK,
 int[] IER)

EIGSYS

private void EIGSYS(int N,
 double EPS,
 double[] D,
 double[] E,
 double[] Z,
 int[] IER)

ASONJ7

private void ASONJ7(double ALFA,
 double BETA,
 double[] A,
 double[] B,
 double[] H,
 int N)

GAMMA

private double GAMMA(double U)

ASQUC7

private void ASQUC7(double[] AQCOF,
 double[] BQCOF,
 double[] CQCOF,
 double[] JACIN,
 int NJIND,
 int NQPTS)

CSCAL3

private void CSCAL3(double[] COLSC,
 int NQPTS,
 int NJIND,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] QUPTS,
 double[] QUWTS,
 double[] JACIN,
 double[] MU,
 double[] TT,
 double[] QQ)

JAPAR7

private void JAPAR7(double[] PP,
 double X,
 double[] AA,
 double[] BB,
 int N)

IGNLVL

private void IGNLVL(double[] RIGLL,
 double[] COLSC,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] JACIN,
 int NJIND,
 int NQPTS,
 int[] IER)

IMTQLH

private void IMTQLH(int N,
 double[] D,
 double[] E,
 int[] IERR)

PYTHAG

private double PYTHAG(double A,
 double B)

CPJAC3

private void CPJAC3(int NARCS,
 int NQPTS,
 int INDEG,
 int[] DGPOL,
 double[] JACIN,
 double[] ACOEF,
 double[] BCOEF,
 double[] DIAG,
 double[] SDIAG,
 int[] TNSUA,
 int[] LOSUB,
 int[] HISUB,
 int[] JATYP,
 int[] PARNT,
 double[] MIDPT,
 double[] HALEN,
 double[] COLPR,
 double[][] ZCOLL,
 boolean[] LNSEG,
 int[] LOOLD,
 int[] HIOLD,
 double EPS,
 int[] IER,
 boolean INIBT)

MDNBT

private double MDNBT(double ALFA,
 double BETA)

SMNAB

private double SMNAB(int N,
 double AL,
 double BE,
 double X)

ICOQR1

private void ICOQR1(int NARCS,
 int NJIND,
 int NQPTS,
 int MDGPO,
 int MQIN1,
 double AQTOL,
 double[] QUPTS,
 double[] QUWTS,
 double[] JACIN,
 double[] MIDPT,
 double[] HALEN,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] COLSC,
 int[] NQUAD,
 int[] LOQSB,
 double[] QCOMX,
 double[] QCOMW,
 int MNQUA,
 double[] TOLOU,
 double[] MCQER,
 double[] XENPT,
 double[][] XIVAL,
 double[] XIDST,
 int[] IER)

SUBIN7

private void SUBIN7(double[][] ZZ,
 int NZZ,
 double BETA,
 int MAXDG,
 int NQUAD,
 double[] AJAC,
 double[] BJAC,
 double H0JAC,
 double[] CSCAL,
 double TOLIN,
 double[] TOLOU,
 double[] XENPT,
 int[] QINTS,
 int MQIN1,
 int[] IER)

DEJAC7

private void DEJAC7(double[][] ZZ,
 int NZZ,
 double BETA,
 double[] TAU,
 int MAXDG,
 int NQUAD,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] REMND,
 double[] CSCAL,
 double[] TOL,
 double[] MAXRM,
 int[] IER)

LGGAM

private double LGGAM(double X)

DELEG7

private void DELEG7(double[][] ZZ,
 int NZZ,
 double BETA,
 double[] TAU1,
 double[] TAU2,
 boolean T1FXD,
 int MAXDG,
 int NQUAD,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] REMND,
 double[] CSCAL,
 double[] TOL,
 double[] MAXRM,
 int[] IER)

RSLT71

private void RSLT71(int[] QIERC,
 double RCOND,
 double[] SOLUN,
 int NEQNS,
 int[] LOSUB,
 int[] HISUB,
 double[] COLSC,
 int NQPTS,
 int[] JATYP,
 int[] PARNT,
 int TNSUA,
 boolean INTER,
 double MQERR,
 double MCQER,
 double[] CINFN,
 int[] ACTIN,
 int[] NEWDG,
 int NJIND,
 double[] JACIN,
 int[] NQUAD,
 double[] TOLOU,
 double LGTOL,
 int SOLCO)

RSLT72

private void RSLT72(int[] QIERC,
 double RCOND,
 double GAMMA,
 int NEQNS,
 int[] DGPOL,
 int[] JATYP,
 int[] PARNT,
 int TNSUA,
 boolean INTER,
 double MQERR,
 double MCQER,
 int[] ACTIN,
 int[] NEWDG,
 int NJIND,
 int[] NQUAD,
 double[] TOLOU,
 double LGTOL,
 int SOLCO)

LNSY11

private void LNSY11(double[][][] MATRX,
 double[] RGTSD,
 int MNEQN,
 int NCOLL,
 int ORDSG,
 boolean REFLN,
 int NQPTS,
 int TNSUA,
 int[] JATYP,
 int[] PARNT,
 int[] DGPOL,
 int[] LOSUB,
 int[] HISUB,
 int[] NQUAD,
 int[] LOQSB,
 double TOLNR,
 double[] MIDPT,
 double[] HALEN,
 double[] H0VAL,
 double[] COLSC,
 double[] ACOEF,
 double[] BCOEF,
 double[] COLPR,
 double[] QCOMX,
 double[] QCOMW,
 double[] CENTR,
 double[][] ZCOLL,
 boolean INTER,
 boolean[] LNSEG,
 double[] WORK,
 int[] QIERR,
 double[] MQERR,
 double[] JACIN,
 double[] A1COF,
 double[] B1COF,
 double AQTOL,
 double RQTOL,
 double[] AQCOF,
 double[] BQCOF,
 double[] CQCOF,
 int[] LOOLD,
 int[] HIOLD)

FNVAL

private double FNVAL(double X)

BCFVTF

private void BCFVTF(double[] BCFSN,
 double[] VTARG,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int[] PARNT,
 int RFARC,
 int TNSUA,
 double[] H0VAL,
 double[] JACIN,
 double RFARG,
 double[] SOLUN)

RECON

private void RECON(int ORDSG,
 boolean REFLN,
 int NCOLL,
 int TNSUA,
 int[] LOSUB,
 int[] HISUB,
 double[] SOLUN)

SETIGL

private void SETIGL(double[] AIGLL,
 int[] HISUB,
 int[] JATYP,
 int[] LOSUB,
 int NQPTS,
 double[] RIGLL,
 int TNSUA)

AXION1

private void AXION1(int[] AXION,
 int[] NEWDG,
 double[] SOLUN,
 int MDGPO,
 int TNSUA,
 int[] DGPOL,
 int[] LOSUB,
 int[] HISUB,
 double[] RIGLL,
 double LGTOL,
 boolean[] ACCPT,
 double[] JACIN,
 int[] JATYP,
 int NJIND,
 double[] NEWHL,
 double[] ESTOL,
 int[] IER)

CRITCO

private int CRITCO(int N,
 double[] POSCO)

STATS1

private void STATS1(double[] SN,
 int M,
 double[] A,
 double[] B,
 double[] EA,
 double[][] COV,
 double[] CONF,
 int[] IER)

UPJAC1

private void UPJAC1(int NQPTS,
 int NJIND,
 int INDEG,
 int[] AXION,
 int[] DGPOL,
 int[] NEWDG,
 double[] ACOEF,
 double[] BCOEF,
 double[] DIAG,
 double[] SDIAG,
 int TNSUA,
 int MNSUA,
 int[] LOSUB,
 int[] HISUB,
 int[] JATYP,
 int[] PARNT,
 double[] MIDPT,
 double[] HALEN,
 double[] COLPR,
 double[][] ZCOLL,
 boolean[] LNSEG,
 boolean[] PNEWQ,
 double EPS,
 int[] IER,
 double[] WORK,
 double[] NEWHL,
 double[] RCOPY,
 int[] ICOPY,
 boolean[] LCOPY,
 int[] LOOLD,
 int[] HIOLD)

UPCOQ1

private void UPCOQ1(int NARCS,
 int NJIND,
 int NQPTS,
 int MDGPO,
 int MQIN1,
 double AQTOL,
 double[] QUPTS,
 double[] QUWTS,
 double[] JACIN,
 double[] MIDPT,
 double[] HALEN,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] COLSC,
 int[] NQUAD,
 int[] LOQSB,
 double[] QCOMX,
 double[] QCOMW,
 int MNQUA,
 double[] TOLOU,
 double[] MCQER,
 double[] XENPT,
 double[][] XIVAL,
 double[] XIDST,
 int TNSUA,
 boolean[] PNEWQ,
 boolean[] NEWQU,
 int[] JATYP,
 int[] PARNT,
 boolean[] NUQTL,
 int[] IER)

TSJAC3

private void TSJAC3(int[] LOTES,
 int[] HITES,
 double[] TESPR,
 double[][] ZTEST,
 int NQPTS,
 int[] NTEST,
 int ORDSG,
 int TNSUA,
 int TSTNG,
 int[] DGPOL,
 int[] JATYP,
 int[] PARNT,
 double[] AICOF,
 double[] BICOF,
 double[] DIAG,
 double[] HALEN,
 double[] JACIN,
 double[] MIDPT,
 double[] SDIAG,
 int[] IER)

TESMD9

private void TESMD9(double[] ERMOD,
 double[][] MATRX,
 double[] SOLUN,
 int MNEQN,
 int NCOLL,
 int NTEST,
 int NQPTS,
 int TNSUA,
 int[] JATYP,
 int[] PARNT,
 int[] DGPOL,
 int[] LOSUB,
 int[] HISUB,
 int[] LOTES,
 int[] HITES,
 int[] NQUAD,
 int[] LOQSB,
 double TOLNR,
 double[] MIDPT,
 double[] HALEN,
 double[] H0VAL,
 double[] COLSC,
 double[] ACOEF,
 double[] BCOEF,
 double[] TESPR,
 double[] QCOMX,
 double[] QCOMW,
 double[] CENTR,
 double[][] ZTEST,
 boolean INTER,
 boolean[] LNSEG,
 double[] WORK,
 int[] QIERR,
 double[] MQERR,
 double[] JACIN,
 double[] A1COF,
 double[] B1COF,
 double AQTOL,
 double RQTOL,
 double[] AQCOF,
 double[] BQCOF,
 double[] CQCOF,
 double[] MXERM,
 int[] IMXER,
 double[] ZMXER,
 double[] ERARC,
 int ORDSG,
 boolean REFLN)

RSLT83

private void RSLT83(double[] ERARC,
 int TNSUA,
 double MXERM,
 double[] ZMXER,
 int IMXER,
 int[] QIERC,
 int[] PARNT,
 int ORDSG)

RSLT84

private void RSLT84(double[] ERMOD,
 int TNSUA,
 double MXERM,
 double[] ZMXER,
 int IMXER,
 int[] LOTES,
 int[] HITES,
 int[] QIERC,
 int[] PARNT,
 int ORDSG)

RESCAL

private void RESCAL(int NQPTS,
 int TNSUA,
 int[] LOSUB,
 int[] HISUB,
 int[] JATYP,
 double[] SOLUN,
 double[] COLSC)

GQPHYC

private void GQPHYC(int MQIN1,
 double[] RWORK,
 int[] IER)

POPQF1

private void POPQF1(int[] NPPQF,
 int[] LPQSB,
 int[] TNPQP,
 double[] TOLOU,
 double[] TPPQF,
 double[] TRRAD,
 double[] WPPQF,
 double[][] ZPPQF,
 int MNQUA,
 int MQIN1,
 int NARCS,
 int NINTS,
 int NQPTS,
 int TNSUA,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int[] PARNT,
 double DELTA,
 double LGTOL,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] HALEN,
 double[] JACIN,
 double[] MIDPT,
 double[] QUPTS,
 double[] QUWTS,
 double[] SOLUN,
 double[] XENPT,
 int[] IER)

PPSBI7

private void PPSBI7(double DELTA,
 int NINTS,
 double BETA,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double TOLIN,
 double[] TOLOU,
 double[] XENPT,
 int[] QINTS,
 int MQIN1,
 int[] IER)

DEPPJ8

private void DEPPJ8(double BETA,
 double[] TAU,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double[] TOL,
 double[] MAXRM,
 int NINTS,
 double DELTA,
 int[] IER)

DEPPJ9

private void DEPPJ9(double[][] ZZ,
 int NZZ,
 double BETA,
 double[] TAU,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double[] TOL,
 double[] MAXRM,
 int[] IER)

CCJACS

private double[] CCJACS(double[] X,
 int N,
 double[] A,
 double[] B,
 double H,
 double[][] CO)

DEPPL8

private void DEPPL8(double BETA,
 double[] TAU1,
 double[] TAU2,
 boolean T1FXD,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double[] TOL,
 double[] MAXRM,
 int NINTS,
 double DELTA,
 int[] IER)

DEPPL9

private void DEPPL9(double[][] ZZ,
 int NZZ,
 double BETA,
 double[] TAU1,
 double[] TAU2,
 boolean T1FXD,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double[] TOL,
 double[] MAXRM,
 boolean FIRST,
 int[] IER)

JACSUM

private double JACSUM(double X,
 int N,
 double[] A,
 double[] B,
 double H,
 double[] CO)

DMPHYC

private void DMPHYC(int NPTS,
 double[][] PHYPT,
 double[][] CANPT,
 boolean WANTM,
 int[] IER)

PHTCA1

private void PHTCA1(int NPTS,
 double[][] PHYPT,
 double[][] CANPT,
 int NARCS,
 int NQPTS,
 int TNSUA,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int[] LPQSB,
 int[] NPPQF,
 int[] PARNT,
 double[] A1COF,
 double[] ACOEF,
 double[] B1COF,
 double[] BCFSN,
 double[] BCOEF,
 double[] H0VAL,
 double[] H1VAL,
 double[] HALEN,
 double[] JACIN,
 double LGTOL,
 double[] MIDPT,
 double[] QUPTS,
 double[] QUWTS,
 double[] SOLUN,
 double[] TPPQF,
 double[] TRRAD,
 double[] VTARG,
 double[] WPPQF,
 double[] CENTR,
 double[] FACTR,
 double[][] ZPPQF,
 boolean INTER,
 int[] IER)

ARGIN1

private double ARGIN1(double RT1,
 double RT2,
 int PT,
 double[] DIFF1,
 double[] DIFF2,
 double[] ZZ,
 double LIMIT)

CJACSU

private double[] CJACSU(double[] X,
 int N,
 double[] A,
 double[] B,
 double H,
 double[] CO)

ZTOB1

private double[] ZTOB1(double[] Z,
 double B1,
 int JT,
 boolean IN)

PPSBI1

private void PPSBI1(double[] ZZ,
 double BETA,
 int NQUAD,
 int DGPOL,
 double[] ACOEF,
 double[] BCOEF,
 double H0VAL,
 double[][] SOLUN,
 double TOLIN,
 double[] TOLOU,
 double[] XENPT,
 int[] QINTS,
 int MQIN1,
 int[] IER)

JACANP

private void JACANP(double[] RWORK,
 int[] IER)

JCFIM5

private void JCFIM5(int[] DGPOC,
 int[] IER,
 int[] JTYPC,
 int[] LSUBC,
 double[] PHPAS,
 int[] PRNSA,
 double[][] SOLNC,
 int TNSUC,
 double[] VARGC,
 double[] AICOF,
 double[] ACOEF,
 double[] ACOFC,
 double[] BICOF,
 double[] BCFSN,
 double[] BCOEF,
 double[] BCOFC,
 double[] CENTR,
 int[] DGPOL,
 double[] ERARC,
 double[] H0VAL,
 double[] H0VLC,
 double[] HIVAL,
 double[] HALEN,
 boolean INTER,
 double[] JACIN,
 double[] JAINC,
 int[] JATYP,
 double LGTOL,
 int[] LOSUB,
 double[] MIDPT,
 int MNCOF,
 int MNSUC,
 int NJIND,
 int NQPTS,
 int[] PARNT,
 double[] QUPTC,
 double[] QUWTC,
 double[] RIGLL,
 double[] SOLUN,
 double NEWTL,
 double[] VTARG)

INVJCO

private void INVJCO(double[][] SOLNC,
 double[] A1COF,
 double AA,
 double[] ACOEF,
 double[] ACOFC,
 double[] B1COF,
 double BB,
 double[] BCFSN,
 double[] BCOEF,
 double[] BCOFC,
 double BETA,
 double BETAC,
 double[] CENTR,
 double CONST,
 int DGPOC,
 int DGPOL,
 double H0VAL,
 double H0VLC,
 double H1VAL,
 double HAANG,
 double HALEN,
 int[] IER,
 boolean INTER,
 double[] JACOF,
 int JTYPC,
 double MIDPT,
 double NEWTL,
 int NQUAD,
 int PARNT,
 double[] QUPTC,
 double[] QUWTC,
 double[][] RHOVL,
 double SJT,
 double SJTC,
 double[] SVAL,
 double TOLIW,
 double[] TVAL,
 double[] WORK)

BISNEW

private void BISNEW(int[] IER,
 double LL,
 double TT,
 double UU,
 double[] A1COF,
 double[] ACOEF,
 double[] B1COF,
 double[] BCFSN,
 double[] BCOEF,
 double BETA,
 int DEG,
 double H0VAL,
 double H1VAL,
 double[] JACOF,
 double NEWTL,
 double SJT,
 double RRHS,
 double TOLIW)

RHOFN

private void RHOFN(int[] IER,
 double[][] RHOVL,
 double[] ACOEF,
 double[] BCOEF,
 double BETA,
 double BETAC,
 double[] CENTR,
 int DGPOL,
 double H0VAL,
 double HAANG,
 double HALEN,
 boolean INTER,
 double MIDPT,
 int NVALS,
 int PARNT,
 double SJT,
 double[] JACOF,
 double[] SVAL,
 double[] TVAL)

CINRAD

private double[] CINRAD(int NARCS,
 int NQPTS,
 int TNSUA,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int[] LPQSB,
 int[] NPPQF,
 int[] PARNT,
 double[] ACOEF,
 double[] BCOEF,
 double[] H0VAL,
 double[] HALEN,
 double[] JACIN,
 double LGTOL,
 double[] MIDPT,
 double[] QUPTS,
 double[] QUWTS,
 double[] SOLUN,
 double[] TPPQF,
 double[] TRRAD,
 double[] WPPQF,
 double[] CENTR,
 double[] FACTR,
 double[][] ZPPQF,
 int[] IER)

BCFSNG

private void BCFSNG(int TNSUC,
 int[] DGPOC,
 int[] JTYPC,
 int[] LSUBC,
 double[] H0VLC,
 double[] JAINC,
 double[][] BFSNC,
 double[][] SOLNC)

OUPTCL

private void OUPTCL(int[] DGPOC,
 int[] JTYPC,
 double LGTOL,
 int[] LSUBC,
 int NQPTS,
 int[] PARNT,
 int[] PRNSA,
 double[] RIGLL,
 double[][] SOLNC,
 int TNSUC,
 boolean INTER,
 double INNRAD,
 int IER)

GQCANP

private void GQCANP(double[] RWORK,
 int[] IER)

POPQG1

private void POPQG1(int[] NPPQG,
 int[] LPQSB,
 int[] TNPQP,
 double[] TOLOU,
 double[][] WPPQG,
 double[][] ZPPQG,
 int MNQUA,
 int MQIN1,
 int NARCS,
 int NINTS,
 int NQPTS,
 int TNSUC,
 int[] DGPOC,
 int[] JTYPC,
 int[] LSUBC,
 double DELTA,
 double LGTOL,
 double[] ACOFC,
 double[] BCOFC,
 double[] H0VLC,
 double[] JAINC,
 double[] QUPTC,
 double[] QUWTC,
 double[][] SOLNC,
 double[] VARGC,
 double[] XENPT,
 int[] IER)

JACSUC

private double[] JACSUC(double X,
 int N,
 double[] A,
 double[] B,
 double H,
 double[][] CO)

CNDPLT

private void CNDPLT(boolean[] MAP11,
 double[] RESMN,
 double[] UPHYC,
 double[] UCANP,
 double CRRES,
 String[] DASH,
 String[] NEWD,
 int[] IER)

DIAGN4

private void DIAGN4(double[] CCAPH,
 double[] COCAP,
 double[] COPHC,
 double[] CPHCA,
 double[] EXCAP,
 double[] EXPHC,
 int[] ICRVS,
 int[] IER,
 int[] IPRVS,
 int[] NASYM,
 int[] NCRVS,
 int[] NINFD,
 int[] NPRVS,
 int[] NZERD,
 double[] ARCLN,
 double[] ASYMP,
 double[] BCDMN,
 double[] CORXX,
 double[] TOTLN,
 double[] VTARG,
 boolean[] MAP11,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int NARCS,
 int NQPTS,
 int NXINT,
 int[] PARNT,
 int TNSUA,
 double[] A1COF,
 double[] ACOEF,
 double[] B1COF,
 double[] BCFSN,
 double[] BCOEF,
 double[] H0VAL,
 double[] H1VAL,
 double[] HALEN,
 double[] JACIN,
 double[] MIDPT,
 double[] SOLUN,
 double[] QUPTS,
 double[] QUWTS)

DSDT

private double DSDT(double X)

DMCANP

private void DMCANP(int NPTS,
 double[][] PHYPT,
 double[][] CANPT,
 boolean WANTM,
 int[] IER)

CATPH4

private void CATPH4(int NPTS,
 double[][] PHYPT,
 double[][] CANPT,
 int NARCS,
 int NQPTS,
 int TNSUC,
 int[] DGPOC,
 int[] JTYPC,
 int[] LSUBC,
 int[] LQSBG,
 int[] NPPQG,
 int[] PARNT,
 int[] PRNSA,
 double[] A1COC,
 double[] ACOFC,
 double[] B1COC,
 double[] BCOFC,
 double[] H0VLC,
 double[] H1VLC,
 double[] HALEN,
 double[] JAINC,
 double LGTOL,
 double[] MIDPT,
 double[] PHPAS,
 double[] QUPTC,
 double[] QUWTC,
 double THET0,
 double[] VARGC,
 double[][] BFSNC,
 double[] CENTR,
 double[] FACTR,
 double[][] SOLNC,
 double[][] WPPQG,
 double[][] ZPPQG,
 boolean INTER,
 int[] IER)

BMPHYC

private void BMPHYC(int IARC,
 double[] PHYPT,
 double[] CANPT,
 double[] DERIV,
 boolean WANTD,
 boolean WANTM,
 int[] IER)

BMPHC1

private void BMPHC1(int IARC,
 double[] PHYPT,
 double[] CANPT,
 double[] DERIV,
 int NQPTS,
 int TNSUA,
 int[] DGPOL,
 int[] JATYP,
 int[] LOSUB,
 int[] LPQSB,
 int[] NPPQF,
 int[] PARNT,
 double[] A1COF,
 double[] ACOEF,
 double[] B1COF,
 double[] BCFSN,
 double[] BCOEF,
 double[] H0VAL,
 double[] H1VAL,
 double[] HALEN,
 double[] JACIN,
 double[] MIDPT,
 double[] SOLUN,
 double[] TPPQF,
 double[] TRRAD,
 double[] VTARG,
 double[][] ZPPQF,
 boolean INTER,
 boolean WANTD,
 int[] IER)

BMCANP

private void BMCANP(double THETA,
 double[] PHYPT,
 double[] DERIV,
 boolean WANTD,
 boolean WANTM,
 int[] IER)

BMCAP1

private void BMCAP1(double[] PHYPT,
 double[] DERIV,
 double THETA,
 int NQPTS,
 int TNSUC,
 int[] DGPOC,
 int[] JTYPC,
 int[] LSUBC,
 int[] PARNT,
 int[] PRNSA,
 double[] A1COC,
 double[] ACOFC,
 double[] B1COC,
 double[] BCOFC,
 double[] H0VLC,
 double[] H1VLC,
 double[] HALEN,
 double[] JAINC,
 double[] MIDPT,
 double[] PHPAS,
 double THET0,
 double[] VARGC,
 double[][] BFSNC,
 double[] CENTR,
 double[][] SOLNC,
 boolean INTER,
 boolean WANTD,
 int[] IER)

LEVCUR

private void LEVCUR(int NCONT,
 double[] RADII,
 int NARGS,
 double[] THETA,
 double[] RAD1,
 double[] RAD2,
 double[] PSD,
 double[] MINPD,
 double[] MAXPD,
 String[] NEWD,
 int[] IER)

DIAPHY

private double DIAPHY(int NARCS)

TSTPLT

private void TSTPLT(double[] MXMIS,
 double[] MXDIF,
 double[] PSD,
 double[] MINPD,
 double[] MAXPD,
 int[] IER)

zabs

public double zabs(double zr,
 double zi)

zabs computes the absolute value or magnitude of a double precision complex variable zr + j*zi.

Parameters:

zr - double

zi - double

Returns:

double

zmlt

public void zmlt(double ar,
 double ai,
 double br,
 double bi,
 double[] cr,
 double[] ci)

complex multiply c = a * b.

Parameters:

ar - double

ai - double

br - double

bi - double

cr - double[]

ci - double[]

zdiv

public void zdiv(double ar,
 double ai,
 double br,
 double bi,
 double[] cr,
 double[] ci)

complex divide c = a/b.

Parameters:

ar - double

ai - double

br - double

bi - double

cr - double[]

ci - double[]

cos

private double[] cos(double[] t)

sin

private double[] sin(double[] t)