java.lang.Object
- gov.nih.mipav.model.structures.ModelSerialCloneable
- - gov.nih.mipav.model.file.FileInfoBase
  - - gov.nih.mipav.model.file.FileInfoMGH

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable
```
public class FileInfoMGH
extends FileInfoBase
```
See Also:

FileMGH, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase
  FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields
Modifier and Type	Field	Description
`private java.lang.String[]`	`cmdlines`
`private int`	`dof`
`private float`	`flipAngle`
`private float`	`fov`
`private float`	`leftCenter`
`private TransMatrix`	`matrix`
`private float`	`posteriorCenter`
`private float`	`superiorCenter`
`private float`	`te`
`private float`	`ti`
`private float`	`tr`
`private java.lang.String`	`transformFileName`
`private int`	`version`	Currently version number is 1

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase
ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors
Constructor Description

FileInfoMGH(java.lang.String name, java.lang.String directory, int format)
file info storage constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`displayAboutInfo(JDialogBase dlog, TransMatrix matrix)`	Displays the file information.
`TransMatrix`	`getMatrix()`
`void`	`setCmdlines(java.lang.String[] cmdlines)`
`void`	`setDOF(int dof)`
`void`	`setFlipAngle(float flipAngle)`
`void`	`setFOV(float fov)`
`void`	`setLeftCenter(float leftCenter)`
`void`	`setMatrix(TransMatrix matrix)`	DOCUMENT ME!
`void`	`setPosteriorCenter(float posteriorCenter)`
`protected java.lang.String`	`setString(java.lang.String str, int len)`	verifies string is not larger than len length; strings larger than len, are clipped before being returned.
`void`	`setSuperiorCenter(float superiorCenter)`
`void`	`setTE(float te)`
`void`	`setTI(float ti)`
`void`	`setTR(float tr)`
`void`	`setTransformFileName(java.lang.String transformFileName)`
`void`	`setVersion(int version)`
`void`	`stateChanged(java.util.Vector ce)`	.
`void`	`updateFileInfos(FileInfoMGH fInfo)`	Propogates the current file info to another FileInfoMGH.

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase
copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable
clone, nativeClone

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

version
```
private int version
```
Currently version number is 1

dof
```
private int dof
```

leftCenter
```
private float leftCenter
```

posteriorCenter
```
private float posteriorCenter
```

superiorCenter
```
private float superiorCenter
```

tr
```
private float tr
```

flipAngle
```
private float flipAngle
```

te
```
private float te
```

ti
```
private float ti
```

fov
```
private float fov
```

transformFileName

private java.lang.String transformFileName

cmdlines
```
private java.lang.String[] cmdlines
```

matrix
```
private TransMatrix matrix
```

Constructor Detail

FileInfoMGH

public FileInfoMGH(java.lang.String name,
                   java.lang.String directory,
                   int format)

file info storage constructor.

Parameters:: name - file name; directory - directory; format - file format

Method Detail

displayAboutInfo
```
public void displayAboutInfo(JDialogBase dlog,
                             TransMatrix matrix)
```
Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setVersion

public void setVersion(int version)

Parameters:: version -

setDOF
```
public void setDOF(int dof)
```
Parameters:

dof -

setLeftCenter

public void setLeftCenter(float leftCenter)

Parameters:: leftCenter -

setPosteriorCenter

public void setPosteriorCenter(float posteriorCenter)

Parameters:: posteriorCenter -

setSuperiorCenter

public void setSuperiorCenter(float superiorCenter)

Parameters:: superiorCenter -

setTR
```
public void setTR(float tr)
```
Parameters:

tr -

setFlipAngle

public void setFlipAngle(float flipAngle)

Parameters:: flipAngle -

setTE
```
public void setTE(float te)
```
Parameters:

te -

setTI
```
public void setTI(float ti)
```
Parameters:

ti -

setFOV
```
public void setFOV(float fov)
```
Parameters:

fov -

setTransformFileName

public void setTransformFileName(java.lang.String transformFileName)

Parameters:: transformFileName -

setCmdlines

public void setCmdlines(java.lang.String[] cmdlines)

Parameters:: cmdlines -

setMatrix
```
public void setMatrix(TransMatrix matrix)
```
DOCUMENT ME!

Parameters:

matrix - DOCUMENT ME!

getMatrix
```
public TransMatrix getMatrix()
```

stateChanged

public void stateChanged(java.util.Vector ce)

.

ce[0] = table	0 = primary, 1 = secondary, etC
ce[1] = line of table
ce[2] = string name	eg, "Type"
ce[3] = Vector codeValue	eg, "B"
ce[4] = string value	eg, "Big"

"ce" comes from ChangeEvent upon which this is based. care to make our own ChangeEvent to store and handle this?

Parameters:: ce - DOCUMENT ME!

updateFileInfos
```
public void updateFileInfos(FileInfoMGH fInfo)
```
Propogates the current file info to another FileInfoMGH.
It does not copy over the datatypeCode. (though, aside from, "it isn't in the about table", I can't think of a reason why it shouldn't. but it doesn't.) Also, copied over is bitPix, aux_file.

Parameters:

fInfo - DOCUMENT ME!

setString
```
protected java.lang.String setString(java.lang.String str,
                                     int len)
```
verifies string is not larger than len length; strings larger than len, are clipped before being returned.

Returns:

String new substring

See Also:

String.substring(int, int)

Class FileInfoMGH

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

Field Summary

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

Methods inherited from class java.lang.Object

Field Detail

version

dof

leftCenter

posteriorCenter

superiorCenter

tr

flipAngle

te

ti

fov

transformFileName

cmdlines

matrix

Constructor Detail

FileInfoMGH

Method Detail

displayAboutInfo

setVersion

setDOF

setLeftCenter

setPosteriorCenter

setSuperiorCenter

setTR

setFlipAngle

setTE

setTI

setFOV

setTransformFileName

setCmdlines

setMatrix

getMatrix

stateChanged

updateFileInfos

setString