Package gov.nih.mipav.model.file

Class FileInfoMGH

java.lang.Object

gov.nih.mipav.model.structures.ModelSerialCloneable

gov.nih.mipav.model.file.FileInfoBase

gov.nih.mipav.model.file.FileInfoMGH

All Implemented Interfaces:

Serializable, Cloneable

public class FileInfoMGH
extends FileInfoBase

See Also:

• FileMGH
• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class gov.nih.mipav.model.file.FileInfoBase

FileInfoBase.AxisOrientation, FileInfoBase.ImageOrientation, FileInfoBase.Modality, FileInfoBase.Unit, FileInfoBase.UnitType

Field Summary

Fields

Modifier and Type	Field	Description
private String[]	cmdlines
private int	dof
private float	flipAngle
private float	fov
private float	leftCenter
private TransMatrix	matrix
private float	posteriorCenter
private float	superiorCenter
private float	te
private float	ti
private float	tr
private String	transformFileName
private int	version	Currently version number is 1

Fields inherited from class gov.nih.mipav.model.file.FileInfoBase

ANGSTROMS, ANGSTROMS_STRING, AXIAL, axisOrientation, axisOrientationStr, BIOMAGNETIC_IMAGING, cameraMake, cameraModel, CENTIMETERS, CENTIMETERS_STRING, COLOR_FLOW_DOPPLER, COMPRESSION_BZIP2, COMPRESSION_GZIP, COMPRESSION_NONE, COMPRESSION_ZIP, COMPUTED_RADIOGRAPHY, COMPUTED_TOMOGRAPHY, conversionSpaceTimeUnits, CORONAL, DEGREES, DEGREES_STRING, DIAPHANOGRAPHY, DIGITAL_RADIOGRAPHY, dtiParams, DUPLEX_DOPPLER, ENDOSCOPY, exposureTime, EXTERNAL_CAMERA_PHOTOGRAPHY, FA, fileName, fileSuffix, FNumber, focalLength, focalLength35, GENERAL_MICROSCOPY, HARDCOPY, HOURS, HOURS_STRING, HZ, HZ_STRING, ICG, imageOrientation, INCHES, INCHES_STRING, INTRAORAL_RADIOGRAPHY, ISOSpeedRating, KILOMETERS, KILOMETERS_STRING, LASER_SURFACE_SCAN, MAGNETIC_RESONANCE, MAGNETIC_RESONANCE_ANGIOGRAPHY, MAGNETIC_RESONANCE_SPECTROSCOPY, MAMMOGRAPHY, METERS, METERS_STRING, MICROMETERS, MICROMETERS_STRING, MICROSEC, MICROSEC_STRING, MILES, MILES_STRING, MILLIMETERS, MILLIMETERS_STRING, MILLISEC, MILLISEC_STRING, MILS, MILS_STRING, MINUTES, MINUTES_STRING, modality, NANOMETERS, NANOMETERS_STRING, NANOSEC, NANOSEC_STRING, NUCLEAR_MEDICINE, ORI_A2P_TYPE, ORI_I2S_TYPE, ORI_L2R_TYPE, ORI_P2A_TYPE, ORI_R2L_TYPE, ORI_S2I_TYPE, ORI_UNKNOWN_TYPE, origin, OTHER, PANORAMIC_XRAY, POSITRON_EMISSION_TOMOGRAPHY, PPM, PPM_STRING, RADIO_FLUOROSCOPY, RADIOGRAPHIC_IMAGING, RADIOTHERAPY_DOSE, RADIOTHERAPY_IMAGE, RADIOTHERAPY_PLAN, RADIOTHERAPY_RECORD, RADIOTHERAPY_STRUCTURE_SET, RADS, RADS_STRING, RED_FREE, SAGITTAL, SECONDS, SECONDS_STRING, SINGLE_PHOTON_EMISSION_COMPUTED_TOMOGRAPHY, SLIDE_MICROSCOPY, sUnits, tagDescription, tagName, THERMOGRAPHY, TRANSFORM_ANOTHER_DATASET, TRANSFORM_MNI_152, TRANSFORM_SCANNER_ANATOMICAL, TRANSFORM_TALAIRACH_TOURNOUX, TRANSFORM_UNKNOWN, tUnits, ULTRASOUND, unitsOfMeasure, UNKNOWN_MEASURE, UNKNOWN_MODALITY, UNKNOWN_ORIENT, UNKNOWN_STRING, XRAY_ANGIOGRAPHY

Constructor Summary

Constructors

Constructor	Description
FileInfoMGH(String name, String directory, int format)	file info storage constructor.

Method Summary

Modifier and Type	Method	Description
void	displayAboutInfo(JDialogBase dlog, TransMatrix matrix)	Displays the file information.
TransMatrix	getMatrix()
void	setCmdlines(String[] cmdlines)
void	setDOF(int dof)
void	setFlipAngle(float flipAngle)
void	setFOV(float fov)
void	setLeftCenter(float leftCenter)
void	setMatrix(TransMatrix matrix)	DOCUMENT ME!
void	setPosteriorCenter(float posteriorCenter)
protected String	setString(String str, int len)	verifies string is not larger than len length; strings larger than len, are clipped before being returned.
void	setSuperiorCenter(float superiorCenter)
void	setTE(float te)
void	setTI(float ti)
void	setTR(float tr)
void	setTransformFileName(String transformFileName)
void	setVersion(int version)
void	stateChanged(Vector ce)	.
void	updateFileInfos(FileInfoMGH fInfo)	Propogates the current file info to another FileInfoMGH.

Methods inherited from class gov.nih.mipav.model.file.FileInfoBase

copyCoreInfo, copyCoreInfo, displayAboutInfo, displayPrimaryInfo, finalize, getAboutInfo, getAllSameDimUnits, getAreaUnitsOfMeasureStr, getAxisDirection, getAxisOrientation, getAxisOrientation, getAxisOrientationFromStr, getAxisOrientationStr, getCameraMake, getCameraModel, getCompressionType, getDataType, getDataTypeFromStr, getDTIParameters, getEndianess, getEndianessFromStr, getExposureTime, getExtents, getFileDirectory, getFileFormat, getFileName, getFileSuffix, getFNumber, getFocalLength, getFocalLength35, getImageOrientation, getImageOrientationFromStr, getImageOrientationStr, getIs2_5D, getISOSpeedRating, getLPSOrigin, getLUT, getMax, getMaxB, getMaxG, getMaxR, getMin, getMinB, getMinG, getMinR, getModality, getModalityFromStr, getModalityStr, getModalityStr, getMultiFile, getNumOfBytesPerPixel, getOffset, getOrigin, getOrigin, getOriginalEndianess, getOriginAtSlice, getPhotometric, getPixelPadValue, getPrimaryInfo, getRescaleIntercept, getRescaleSlope, getResolution, getResolutions, getSize, getSliceThickness, getUnitsOfMeasure, getUnitsOfMeasure, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureAbbrevStr, getUnitsOfMeasureFromStr, getUnitsOfMeasureStr, getUnitsOfMeasureStr, getVolumeUnitsOfMeasureStr, isDicomOrdered, oppositeOrient, sameAxis, setAxisOrientation, setAxisOrientation, setCameraMake, setCameraModel, setCompressionType, setDataType, setDTIParameters, setEndianess, setExposureTime, setExtents, setExtents, setFileDirectory, setFileFormat, setFileName, setFileSuffix, setFNumber, setFocalLength, setFocalLength35, setImageOrientation, setISOSpeedRating, setLUT, setMax, setMaxB, setMaxG, setMaxR, setMin, setMinB, setMinG, setMinR, setModality, setMultiFile, setOffset, setOrigin, setOrigin, setOriginalEndianess, setPhotometric, setPixelPadValue, setRescaleIntercept, setRescaleSlope, setResolutions, setResolutions, setSliceThickness, setTagDescription, setTagName, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, setUnitsOfMeasure, toString

Methods inherited from class gov.nih.mipav.model.structures.ModelSerialCloneable

clone, nativeClone

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

version

private int version

Currently version number is 1

dof

private int dof

leftCenter

private float leftCenter

posteriorCenter

private float posteriorCenter

superiorCenter

private float superiorCenter

tr

private float tr

flipAngle

private float flipAngle

te

private float te

ti

private float ti

fov

private float fov

transformFileName

private String transformFileName

cmdlines

private String[] cmdlines

matrix

private TransMatrix matrix

Constructor Details

FileInfoMGH

public FileInfoMGH(String name,
 String directory,
 int format)

file info storage constructor.

Parameters:

name - file name

directory - directory

format - file format

Method Details

displayAboutInfo

public void displayAboutInfo(JDialogBase dlog,
 TransMatrix matrix)

Displays the file information.

Specified by:

displayAboutInfo in class FileInfoBase

Parameters:

dlog - dialog box that is written to

matrix - transformation matrix

setVersion

public void setVersion(int version)

Parameters:

version -

setDOF

public void setDOF(int dof)

Parameters:

dof -

setLeftCenter

public void setLeftCenter(float leftCenter)

Parameters:

leftCenter -

setPosteriorCenter

public void setPosteriorCenter(float posteriorCenter)

Parameters:

posteriorCenter -

setSuperiorCenter

public void setSuperiorCenter(float superiorCenter)

Parameters:

superiorCenter -

setTR

public void setTR(float tr)

Parameters:

tr -

setFlipAngle

public void setFlipAngle(float flipAngle)

Parameters:

flipAngle -

setTE

public void setTE(float te)

Parameters:

te -

setTI

public void setTI(float ti)

Parameters:

ti -

setFOV

public void setFOV(float fov)

Parameters:

fov -

setTransformFileName

public void setTransformFileName(String transformFileName)

Parameters:

transformFileName -

setCmdlines

public void setCmdlines(String[] cmdlines)

Parameters:

cmdlines -

setMatrix

public void setMatrix(TransMatrix matrix)

DOCUMENT ME!

Parameters:

matrix - DOCUMENT ME!

getMatrix

public TransMatrix getMatrix()

stateChanged

public void stateChanged(Vector ce)

.

ce[0] = table	0 = primary, 1 = secondary, etC
ce[1] = line of table
ce[2] = string name	eg, "Type"
ce[3] = Vector codeValue	eg, "B"
ce[4] = string value	eg, "Big"

"ce" comes from ChangeEvent upon which this is based. care to make our own ChangeEvent to store and handle this?

Parameters:

ce - DOCUMENT ME!

updateFileInfos

public void updateFileInfos(FileInfoMGH fInfo)

Propogates the current file info to another FileInfoMGH.

It does not copy over the datatypeCode. (though, aside from, "it isn't in the about table", I can't think of a reason why it shouldn't. but it doesn't.) Also, copied over is bitPix, aux_file.

Parameters:

fInfo - DOCUMENT ME!

setString

protected String setString(String str,
 int len)

verifies string is not larger than len length; strings larger than len, are clipped before being returned.

Returns:

String new substring

See Also:

• String.substring(int, int)