Package gov.nih.mipav.model.file

Class FileInfoPARREC

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable
    public class FileInfoPARREC
extends FileInfoBase
    Created by IntelliJ IDEA. User: bennett Date: Mar 16, 2007 Time: 9:18:41 AM To change this template use File | Settings | File Templates. Updated September 16, 2011 by Beth Tyrie
    See Also:
    Serialized Form

    • Field Detail

      • VolParameters

        private static java.util.HashMap<java.lang.String,​java.lang.String> VolParameters
        vol parameters

      • sliceInfo

        private java.lang.String sliceInfo
        slice specific info

      • version

        private java.lang.String version
        par/rec version

      • date

        private java.lang.String date
        par/rec date

      • time

        private java.lang.String time

      • patientName

        private java.lang.String patientName

      • examName

        private java.lang.String examName
        par/rec examName

      • protocolName

        private java.lang.String protocolName
        par/rec protocolName

      • patientPosition

        private java.lang.String patientPosition
        par/rec patientPosition

      • foldover

        private java.lang.String foldover
        par/rec PreparationDirection

      • sliceAng

        private double[] sliceAng
        par/rec slice Angulation

      • offCentre

        private double[] offCentre
        Off-centre translation

      • stringBvalueArray

        private java.lang.String[] stringBvalueArray
        par/rec Bvalues

      • stringGradientArray

        private java.lang.String[] stringGradientArray
        par/rec gradients

      • repetitionTime

        private java.lang.String repetitionTime

      • firstOrientValue

        private int firstOrientValue
        Slice Orientation Value (sag/cor/tra)

      • numSlices

        private int numSlices
        numSlices

      • numVolumes

        private int numVolumes
        numSlices

      • generalInfoList

        private java.util.ArrayList<java.lang.String> generalInfoList

      • imageInfoList

        private java.util.ArrayList<java.lang.String> imageInfoList

      • originalDataType

        private int originalDataType

      • scaleSlope

        private float scaleSlope

      • echoNumber

        private int[] echoNumber

      • dynamicScanNumber

        private int[] dynamicScanNumber

      • cardiacPhaseNumber

        private int[] cardiacPhaseNumber

      • imageTypeMR

        private int[] imageTypeMR

      • scanningSequence

        private int[] scanningSequence

      • scanPercentage

        private int[] scanPercentage

      • windowCenter

        private int[] windowCenter

      • windowWidth

        private int[] windowWidth

      • imageAngulation

        private float[][] imageAngulation

      • imageOffcentre

        private float[][] imageOffcentre

      • fmriStatusIndication

        private int[] fmriStatusIndication

      • imageTypeEDES

        private int[] imageTypeEDES

      • echoTime

        private float[] echoTime

      • dynamicScanBeginTime

        private float[] dynamicScanBeginTime

      • triggerTime

        private float[] triggerTime

      • numberOfAverages

        private int[] numberOfAverages

      • flipAngle

        private float[] flipAngle

      • cardiacFrequency

        private int[] cardiacFrequency

      • minimumRRInterval

        private int[] minimumRRInterval

      • maximumRRInterval

        private int[] maximumRRInterval

      • turboFactor

        private int[] turboFactor

      • inversionDelay

        private float[] inversionDelay

      • diffusionBFactor

        private float[] diffusionBFactor

      • diffusionBValueNumber

        private int[] diffusionBValueNumber

      • gradientOrientationNumber

        private int[] gradientOrientationNumber

      • contrastType

        private java.lang.String[] contrastType

      • diffusionAnisotropyType

        private java.lang.String[] diffusionAnisotropyType

      • diffusion

        private float[][] diffusion

      • labelType

        private int[] labelType

      • contrastBolusAgent

        private java.lang.String[] contrastBolusAgent

      • contrastBolusRoute

        private float[] contrastBolusRoute

      • contrastBolusVolume

        private java.lang.String[] contrastBolusVolume

      • contrastBolusStartTime

        private java.lang.String[] contrastBolusStartTime

      • contrastBolusTotalDose

        private float[] contrastBolusTotalDose

      • contrastBolusIngredient

        private java.lang.String[] contrastBolusIngredient

      • contrastBolusIngredientConcentration

        private float[] contrastBolusIngredientConcentration

    • Constructor Detail

      • FileInfoPARREC

        public FileInfoPARREC​(java.lang.String name,
                      java.lang.String directory,
                      int format)

    • Method Detail

      • displayDTIInfo_JDialogText

        public void displayDTIInfo_JDialogText​(JDialogText dlg,
                                       int index)

      • displayDTIInfo_JDialogFileInfo

        public void displayDTIInfo_JDialogFileInfo​(JDialogFileInfo dlg)

      • displayAboutInfo

        public void displayAboutInfo​(JDialogBase dlog,
                             TransMatrix matrix)
        Description copied from class: FileInfoBase
        Abstract method which is used by the extending class to display information about the window.
        Specified by:
        displayAboutInfo in class FileInfoBase
        Parameters:
        dlog - Area where image information is to be displayed.
        matrix - Transformation matrix

      • getVolParameters

        public java.util.HashMap<java.lang.String,​java.lang.String> getVolParameters()
        getter for vol parameters

      • setVolParameters

        public void setVolParameters​(java.util.HashMap<java.lang.String,​java.lang.String> volParameters)

      • getSliceInfo

        public java.lang.String getSliceInfo()

      • setSliceInfo

        public void setSliceInfo​(java.lang.String sliceInfo)

      • getVersion

        public java.lang.String getVersion()

      • setVersion

        public void setVersion​(java.lang.String version)

      • getDate

        public java.lang.String getDate()

      • setDate

        public void setDate​(java.lang.String date)

      • getTime

        public java.lang.String getTime()

      • setTime

        public void setTime​(java.lang.String time)

      • setPatientName

        public void setPatientName​(java.lang.String patientName)

      • getPatientName

        public java.lang.String getPatientName()

      • getExamName

        public java.lang.String getExamName()

      • setExamName

        public void setExamName​(java.lang.String examName)

      • getProtocolName

        public java.lang.String getProtocolName()

      • setProtocolName

        public void setProtocolName​(java.lang.String protocolName)

      • getPatientPosition

        public java.lang.String getPatientPosition()

      • setPatientPosition

        public void setPatientPosition​(java.lang.String patientPosition)

      • getPreparationDirection

        public java.lang.String getPreparationDirection()

      • setPreparationDirection

        public void setPreparationDirection​(java.lang.String foldover)

      • setSliceAngulation

        public void setSliceAngulation​(double[] sliceAng)

      • getSliceAngulation

        public double[] getSliceAngulation()

      • setOffCentre

        public void setOffCentre​(double[] offCentre)

      • getOffCentre

        public double[] getOffCentre()

      • getNumSlices

        public int getNumSlices()

      • setNumSlices

        public void setNumSlices​(int numSlices)

      • getSliceOrient

        public int getSliceOrient()

      • setSliceOrient

        public void setSliceOrient​(int firstOrientValue)

      • getNumVolumes

        public int getNumVolumes()

      • setNumVolumes

        public void setNumVolumes​(int numVolumes)

      • getGeneralInfoList

        public java.util.ArrayList<java.lang.String> getGeneralInfoList()

      • setGeneralInfoList

        public void setGeneralInfoList​(java.lang.String info)

      • getImageInfoList

        public java.util.ArrayList<java.lang.String> getImageInfoList()

      • setImageInfoList

        public void setImageInfoList​(java.lang.String info)

      • setOriginalDataType

        public void setOriginalDataType​(int originalDataType)

      • getOriginalDataType

        public int getOriginalDataType()

      • setScaleSlope

        public void setScaleSlope​(float scaleSlope)

      • getScaleSlope

        public float getScaleSlope()

      • setRepetitionTime

        public void setRepetitionTime​(java.lang.String repetitionTime)

      • getRepetitionTime

        public java.lang.String getRepetitionTime()

      • setEchoNumber

        public void setEchoNumber​(int[] echoNumber)

      • getEchoNumber

        public int[] getEchoNumber()

      • setDynamicScanNumber

        public void setDynamicScanNumber​(int[] dynamicScanNumber)

      • getDynamicScanNumber

        public int[] getDynamicScanNumber()

      • setCardiacPhaseNumber

        public void setCardiacPhaseNumber​(int[] cardiacPhaseNumber)

      • getCardiacPhaseNumber

        public int[] getCardiacPhaseNumber()

      • setImageTypeMR

        public void setImageTypeMR​(int[] imageTypeMR)

      • getImageTypeMR

        public int[] getImageTypeMR()

      • setScanningSequence

        public void setScanningSequence​(int[] scanningSequence)

      • getScanningSequence

        public int[] getScanningSequence()

      • setScanPercentage

        public void setScanPercentage​(int[] scanPercentage)

      • getScanPercentage

        public int[] getScanPercentage()

      • setWindowCenter

        public void setWindowCenter​(int[] windowCenter)

      • getWindowCenter

        public int[] getWindowCenter()

      • setWindowWidth

        public void setWindowWidth​(int[] windowWidth)

      • getWindowWidth

        public int[] getWindowWidth()

      • setImageAngulation

        public void setImageAngulation​(float[][] imageAngulation)

      • getImageAngulation

        public float[][] getImageAngulation()

      • setImageOffcentre

        public void setImageOffcentre​(float[][] imageOffcentre)

      • getImageOffcentre

        public float[][] getImageOffcentre()

      • setFmriStatusIndication

        public void setFmriStatusIndication​(int[] fmriStatusIndication)

      • getFmriStatusIndication

        public int[] getFmriStatusIndication()

      • setImageTypeEDES

        public void setImageTypeEDES​(int[] imageTypeEDES)

      • imageTypeEDES

        public int[] imageTypeEDES()

      • setEchoTime

        public void setEchoTime​(float[] echoTime)

      • getEchoTime

        public float[] getEchoTime()

      • setDynamicScanBeginTime

        public void setDynamicScanBeginTime​(float[] dynamicScanBeginTime)

      • getDynamicScanBeginTime

        public float[] getDynamicScanBeginTime()

      • setTriggerTime

        public void setTriggerTime​(float[] triggerTime)

      • getTriggerTime

        public float[] getTriggerTime()

      • setNumberOfAverages

        public void setNumberOfAverages​(int[] numberOfAverages)

      • getNumberOfAverages

        public int[] getNumberOfAverages()

      • setFlipAngle

        public void setFlipAngle​(float[] flipAngle)

      • getFlipAngle

        public float[] getFlipAngle()

      • setCardiacFrequency

        public void setCardiacFrequency​(int[] cardiacFrequency)

      • getCardiacFrequency

        public int[] getCardiacFrequency()

      • setMinimumRRInterval

        public void setMinimumRRInterval​(int[] minimumRRInterval)

      • getMinimumRRInterval

        public int[] getMinimumRRInterval()

      • setMaximumRRInterval

        public void setMaximumRRInterval​(int[] maximumRRInterval)

      • getMaximumRRInterval

        public int[] getMaximumRRInterval()

      • setTurboFactor

        public void setTurboFactor​(int[] turboFactor)

      • getTurobFactor

        public int[] getTurobFactor()

      • setInversionDelay

        public void setInversionDelay​(float[] inversionDelay)

      • getInversionDelay

        public float[] getInversionDelay()

      • setDiffusionBFactor

        public void setDiffusionBFactor​(float[] diffusionBFactor)

      • getDiffusionBFactor

        public float[] getDiffusionBFactor()

      • setDiffusionBValueNumber

        public void setDiffusionBValueNumber​(int[] diffusionBValueNumber)

      • getDiffusionBValueNumber

        public int[] getDiffusionBValueNumber()

      • setGradientOrientationNumber

        public void setGradientOrientationNumber​(int[] gradientOrientationNumber)

      • getGradientOrientationNumber

        public int[] getGradientOrientationNumber()

      • setContrastType

        public void setContrastType​(java.lang.String[] contrastType)

      • getContrastType

        public java.lang.String[] getContrastType()

      • setDiffusionAnisotropyType

        public void setDiffusionAnisotropyType​(java.lang.String[] diffusionAnisotropyType)

      • getDiffusionAnisotropyType

        public java.lang.String[] getDiffusionAnisotropyType()

      • setDiffusion

        public void setDiffusion​(float[][] diffusion)

      • getDiffusion

        public float[][] getDiffusion()

      • setLabelType

        public void setLabelType​(int[] labelType)

      • getLabelType

        public int[] getLabelType()

      • setContrastBolusAgent

        public void setContrastBolusAgent​(java.lang.String[] contrastBolusAgent)

      • getContrastBolusAgent

        public java.lang.String[] getContrastBolusAgent()

      • setContrastBolusRoute

        public void setContrastBolusRoute​(float[] contrastBolusRoute)

      • getContrastBolusRoute

        public float[] getContrastBolusRoute()

      • setContrastBolusVolume

        public void setContrastBolusVolume​(java.lang.String[] contrastBolusVolume)

      • getContrastBolusVolume

        public java.lang.String[] getContrastBolusVolume()

      • setContrastBolusStartTime

        public void setContrastBolusStartTime​(java.lang.String[] contrastBolusStartTime)

      • getContrastBolusStartTime

        public java.lang.String[] getContrastBolusStartTime()

      • setContrastBolusTotalDose

        public void setContrastBolusTotalDose​(float[] contrastBolusTotalDose)

      • getContrastBolusTotalDose

        public float[] getContrastBolusTotalDose()

      • setContrastBolusIngredient

        public void setContrastBolusIngredient​(java.lang.String[] contrastBolusIngredient)

      • getContrastBolusIngredient

        public java.lang.String[] getContrastBolusIngredient()

      • setContrastBolusIngredientConcentration

        public void setContrastBolusIngredientConcentration​(float[] contrastBolusIngredientConcentration)

      • getContrastBolusIngredientConcentration

        public float[] getContrastBolusIngredientConcentration()