Package gov.nih.mipav.model.file

Class FileInfoPARREC

java.lang.Object
gov.nih.mipav.model.structures.ModelSerialCloneable
gov.nih.mipav.model.file.FileInfoBase
gov.nih.mipav.model.file.FileInfoPARREC
All Implemented Interfaces:
Serializable, Cloneable
public class FileInfoPARREC extends FileInfoBase
Created by IntelliJ IDEA. User: bennett Date: Mar 16, 2007 Time: 9:18:41 AM To change this template use File | Settings | File Templates. Updated September 16, 2011 by Beth Tyrie
See Also:

  • Field Details

    • VolParameters

      private static HashMap<String,String> VolParameters
      vol parameters

    • sliceInfo

      private String sliceInfo
      slice specific info

    • version

      private String version
      par/rec version

    • date

      private String date
      par/rec date

    • time

      private String time

    • patientName

      private String patientName

    • examName

      private String examName
      par/rec examName

    • protocolName

      private String protocolName
      par/rec protocolName

    • patientPosition

      private String patientPosition
      par/rec patientPosition

    • foldover

      private String foldover
      par/rec PreparationDirection

    • sliceAng

      private double[] sliceAng
      par/rec slice Angulation

    • offCentre

      private double[] offCentre
      Off-centre translation

    • stringBvalueArray

      private String[] stringBvalueArray
      par/rec Bvalues

    • stringGradientArray

      private String[] stringGradientArray
      par/rec gradients

    • repetitionTime

      private String repetitionTime

    • firstOrientValue

      private int firstOrientValue
      Slice Orientation Value (sag/cor/tra)

    • numSlices

      private int numSlices
      numSlices

    • numVolumes

      private int numVolumes
      numSlices

    • generalInfoList

      private ArrayList<String> generalInfoList

    • imageInfoList

      private ArrayList<String> imageInfoList

    • originalDataType

      private int originalDataType

    • scaleSlope

      private float scaleSlope

    • echoNumber

      private int[] echoNumber

    • dynamicScanNumber

      private int[] dynamicScanNumber

    • cardiacPhaseNumber

      private int[] cardiacPhaseNumber

    • imageTypeMR

      private int[] imageTypeMR

    • scanningSequence

      private int[] scanningSequence

    • scanPercentage

      private int[] scanPercentage

    • windowCenter

      private int[] windowCenter

    • windowWidth

      private int[] windowWidth

    • imageAngulation

      private float[][] imageAngulation

    • imageOffcentre

      private float[][] imageOffcentre

    • fmriStatusIndication

      private int[] fmriStatusIndication

    • imageTypeEDES

      private int[] imageTypeEDES

    • echoTime

      private float[] echoTime

    • dynamicScanBeginTime

      private float[] dynamicScanBeginTime

    • triggerTime

      private float[] triggerTime

    • numberOfAverages

      private int[] numberOfAverages

    • flipAngle

      private float[] flipAngle

    • cardiacFrequency

      private int[] cardiacFrequency

    • minimumRRInterval

      private int[] minimumRRInterval

    • maximumRRInterval

      private int[] maximumRRInterval

    • turboFactor

      private int[] turboFactor

    • inversionDelay

      private float[] inversionDelay

    • diffusionBFactor

      private float[] diffusionBFactor

    • diffusionBValueNumber

      private int[] diffusionBValueNumber

    • gradientOrientationNumber

      private int[] gradientOrientationNumber

    • contrastType

      private String[] contrastType

    • diffusionAnisotropyType

      private String[] diffusionAnisotropyType

    • diffusion

      private float[][] diffusion

    • labelType

      private int[] labelType

    • contrastBolusAgent

      private String[] contrastBolusAgent

    • contrastBolusRoute

      private float[] contrastBolusRoute

    • contrastBolusVolume

      private String[] contrastBolusVolume

    • contrastBolusStartTime

      private String[] contrastBolusStartTime

    • contrastBolusTotalDose

      private float[] contrastBolusTotalDose

    • contrastBolusIngredient

      private String[] contrastBolusIngredient

    • contrastBolusIngredientConcentration

      private float[] contrastBolusIngredientConcentration

  • Constructor Details

    • FileInfoPARREC

      public FileInfoPARREC(String name, String directory, int format)

  • Method Details

    • displayDTIInfo_JDialogText

      public void displayDTIInfo_JDialogText(JDialogText dlg, int index)

    • displayDTIInfo_JDialogFileInfo

      public void displayDTIInfo_JDialogFileInfo(JDialogFileInfo dlg)

    • displayAboutInfo

      public void displayAboutInfo(JDialogBase dlog, TransMatrix matrix)
      Description copied from class: FileInfoBase
      Abstract method which is used by the extending class to display information about the window.
      Specified by:
      displayAboutInfo in class FileInfoBase
      Parameters:
      dlog - Area where image information is to be displayed.
      matrix - Transformation matrix

    • displayAboutInfo

      public void displayAboutInfo(JDialogBase dlog, TransMatrix matrix, int index)

    • getVolParameters

      public HashMap<String,String> getVolParameters()
      getter for vol parameters

    • setVolParameters

      public void setVolParameters(HashMap<String,String> volParameters)

    • getSliceInfo

      public String getSliceInfo()

    • setSliceInfo

      public void setSliceInfo(String sliceInfo)

    • getVersion

      public String getVersion()

    • setVersion

      public void setVersion(String version)

    • getDate

      public String getDate()

    • setDate

      public void setDate(String date)

    • getTime

      public String getTime()

    • setTime

      public void setTime(String time)

    • setPatientName

      public void setPatientName(String patientName)

    • getPatientName

      public String getPatientName()

    • getExamName

      public String getExamName()

    • setExamName

      public void setExamName(String examName)

    • getProtocolName

      public String getProtocolName()

    • setProtocolName

      public void setProtocolName(String protocolName)

    • getPatientPosition

      public String getPatientPosition()

    • setPatientPosition

      public void setPatientPosition(String patientPosition)

    • getPreparationDirection

      public String getPreparationDirection()

    • setPreparationDirection

      public void setPreparationDirection(String foldover)

    • setSliceAngulation

      public void setSliceAngulation(double[] sliceAng)

    • getSliceAngulation

      public double[] getSliceAngulation()

    • setOffCentre

      public void setOffCentre(double[] offCentre)

    • getOffCentre

      public double[] getOffCentre()

    • getNumSlices

      public int getNumSlices()

    • setNumSlices

      public void setNumSlices(int numSlices)

    • getSliceOrient

      public int getSliceOrient()

    • setSliceOrient

      public void setSliceOrient(int firstOrientValue)

    • getNumVolumes

      public int getNumVolumes()

    • setNumVolumes

      public void setNumVolumes(int numVolumes)

    • getGeneralInfoList

      public ArrayList<String> getGeneralInfoList()

    • setGeneralInfoList

      public void setGeneralInfoList(String info)

    • getImageInfoList

      public ArrayList<String> getImageInfoList()

    • setImageInfoList

      public void setImageInfoList(String info)

    • setOriginalDataType

      public void setOriginalDataType(int originalDataType)

    • getOriginalDataType

      public int getOriginalDataType()

    • setScaleSlope

      public void setScaleSlope(float scaleSlope)

    • getScaleSlope

      public float getScaleSlope()

    • setRepetitionTime

      public void setRepetitionTime(String repetitionTime)

    • getRepetitionTime

      public String getRepetitionTime()

    • setEchoNumber

      public void setEchoNumber(int[] echoNumber)

    • getEchoNumber

      public int[] getEchoNumber()

    • setDynamicScanNumber

      public void setDynamicScanNumber(int[] dynamicScanNumber)

    • getDynamicScanNumber

      public int[] getDynamicScanNumber()

    • setCardiacPhaseNumber

      public void setCardiacPhaseNumber(int[] cardiacPhaseNumber)

    • getCardiacPhaseNumber

      public int[] getCardiacPhaseNumber()

    • setImageTypeMR

      public void setImageTypeMR(int[] imageTypeMR)

    • getImageTypeMR

      public int[] getImageTypeMR()

    • setScanningSequence

      public void setScanningSequence(int[] scanningSequence)

    • getScanningSequence

      public int[] getScanningSequence()

    • setScanPercentage

      public void setScanPercentage(int[] scanPercentage)

    • getScanPercentage

      public int[] getScanPercentage()

    • setWindowCenter

      public void setWindowCenter(int[] windowCenter)

    • getWindowCenter

      public int[] getWindowCenter()

    • setWindowWidth

      public void setWindowWidth(int[] windowWidth)

    • getWindowWidth

      public int[] getWindowWidth()

    • setImageAngulation

      public void setImageAngulation(float[][] imageAngulation)

    • getImageAngulation

      public float[][] getImageAngulation()

    • setImageOffcentre

      public void setImageOffcentre(float[][] imageOffcentre)

    • getImageOffcentre

      public float[][] getImageOffcentre()

    • setFmriStatusIndication

      public void setFmriStatusIndication(int[] fmriStatusIndication)

    • getFmriStatusIndication

      public int[] getFmriStatusIndication()

    • setImageTypeEDES

      public void setImageTypeEDES(int[] imageTypeEDES)

    • imageTypeEDES

      public int[] imageTypeEDES()

    • setEchoTime

      public void setEchoTime(float[] echoTime)

    • getEchoTime

      public float[] getEchoTime()

    • setDynamicScanBeginTime

      public void setDynamicScanBeginTime(float[] dynamicScanBeginTime)

    • getDynamicScanBeginTime

      public float[] getDynamicScanBeginTime()

    • setTriggerTime

      public void setTriggerTime(float[] triggerTime)

    • getTriggerTime

      public float[] getTriggerTime()

    • setNumberOfAverages

      public void setNumberOfAverages(int[] numberOfAverages)

    • getNumberOfAverages

      public int[] getNumberOfAverages()

    • setFlipAngle

      public void setFlipAngle(float[] flipAngle)

    • getFlipAngle

      public float[] getFlipAngle()

    • setCardiacFrequency

      public void setCardiacFrequency(int[] cardiacFrequency)

    • getCardiacFrequency

      public int[] getCardiacFrequency()

    • setMinimumRRInterval

      public void setMinimumRRInterval(int[] minimumRRInterval)

    • getMinimumRRInterval

      public int[] getMinimumRRInterval()

    • setMaximumRRInterval

      public void setMaximumRRInterval(int[] maximumRRInterval)

    • getMaximumRRInterval

      public int[] getMaximumRRInterval()

    • setTurboFactor

      public void setTurboFactor(int[] turboFactor)

    • getTurobFactor

      public int[] getTurobFactor()

    • setInversionDelay

      public void setInversionDelay(float[] inversionDelay)

    • getInversionDelay

      public float[] getInversionDelay()

    • setDiffusionBFactor

      public void setDiffusionBFactor(float[] diffusionBFactor)

    • getDiffusionBFactor

      public float[] getDiffusionBFactor()

    • setDiffusionBValueNumber

      public void setDiffusionBValueNumber(int[] diffusionBValueNumber)

    • getDiffusionBValueNumber

      public int[] getDiffusionBValueNumber()

    • setGradientOrientationNumber

      public void setGradientOrientationNumber(int[] gradientOrientationNumber)

    • getGradientOrientationNumber

      public int[] getGradientOrientationNumber()

    • setContrastType

      public void setContrastType(String[] contrastType)

    • getContrastType

      public String[] getContrastType()

    • setDiffusionAnisotropyType

      public void setDiffusionAnisotropyType(String[] diffusionAnisotropyType)

    • getDiffusionAnisotropyType

      public String[] getDiffusionAnisotropyType()

    • setDiffusion

      public void setDiffusion(float[][] diffusion)

    • getDiffusion

      public float[][] getDiffusion()

    • setLabelType

      public void setLabelType(int[] labelType)

    • getLabelType

      public int[] getLabelType()

    • setContrastBolusAgent

      public void setContrastBolusAgent(String[] contrastBolusAgent)

    • getContrastBolusAgent

      public String[] getContrastBolusAgent()

    • setContrastBolusRoute

      public void setContrastBolusRoute(float[] contrastBolusRoute)

    • getContrastBolusRoute

      public float[] getContrastBolusRoute()

    • setContrastBolusVolume

      public void setContrastBolusVolume(String[] contrastBolusVolume)

    • getContrastBolusVolume

      public String[] getContrastBolusVolume()

    • setContrastBolusStartTime

      public void setContrastBolusStartTime(String[] contrastBolusStartTime)

    • getContrastBolusStartTime

      public String[] getContrastBolusStartTime()

    • setContrastBolusTotalDose

      public void setContrastBolusTotalDose(float[] contrastBolusTotalDose)

    • getContrastBolusTotalDose

      public float[] getContrastBolusTotalDose()

    • setContrastBolusIngredient

      public void setContrastBolusIngredient(String[] contrastBolusIngredient)

    • getContrastBolusIngredient

      public String[] getContrastBolusIngredient()

    • setContrastBolusIngredientConcentration

      public void setContrastBolusIngredientConcentration(float[] contrastBolusIngredientConcentration)

    • getContrastBolusIngredientConcentration

      public float[] getContrastBolusIngredientConcentration()