Package gov.nih.mipav.model.algorithms.utilities

Class AlgorithmCropTilted

java.lang.Object

java.lang.Thread

gov.nih.mipav.model.algorithms.AlgorithmBase

gov.nih.mipav.model.algorithms.utilities.AlgorithmCropTilted

All Implemented Interfaces:

ActionListener, WindowListener, Runnable, EventListener

public class AlgorithmCropTilted
extends AlgorithmBase

Algorithm to crop a tilted rectangle

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.Builder, Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field	Description
static final int	DEGREES	used for setting rotation
(package private) final int	MASK_METHOD
(package private) int	method
static final int	RADIANS	used for setting rotation
private ModelImage	resultImage
private boolean	run2D
(package private) final int	VERTICES_METHOD
(package private) final int	VOI_METHOD
private double	x1
private double	x2
private double	x3
private double	x4
private double	x5
private double	x6
private double	x7
private double	x8
private double	y1
private double	y2
private double	y3
private double	y4
private double	y5
private double	y6
private double	y7
private double	y8
private double	z1
private double	z2
private double	z3
private double	z4
private double	z5
private double	z6
private double	z7
private double	z8

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor	Description
AlgorithmCropTilted(ModelImage srcImage, double x1, double y1, double z1, double x2, double y2, double z2, double x3, double y3, double z3, double x4, double y4, double z4, double x5, double y5, double z5, double x6, double y6, double z6, double x7, double y7, double z7, double x8, double y8, double z8, int method)	Rotate tilted cuboid to remove tilt and crop cuboid.
AlgorithmCropTilted(ModelImage srcImage, double x1, double y1, double x2, double y2, double x3, double y3, double x4, double y4, int method)	Rotate tilted rectangle to remove tilt and crop rectangle.

Method Summary

Modifier and Type	Method	Description
ModelImage	getResultImage()
void	runAlgorithm()	Actually runs the algorithm.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, isVirtual, join, join, join, join, ofPlatform, ofVirtual, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, sleep, start, startVirtualThread, stop, suspend, threadId, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

x1

private double x1

x2

private double x2

x3

private double x3

x4

private double x4

x5

private double x5

x6

private double x6

x7

private double x7

x8

private double x8

y1

private double y1

y2

private double y2

y3

private double y3

y4

private double y4

y5

private double y5

y6

private double y6

y7

private double y7

y8

private double y8

z1

private double z1

z2

private double z2

z3

private double z3

z4

private double z4

z5

private double z5

z6

private double z6

z7

private double z7

z8

private double z8

VERTICES_METHOD

final int VERTICES_METHOD

See Also:

• Constant Field Values

VOI_METHOD

final int VOI_METHOD

See Also:

• Constant Field Values

MASK_METHOD

final int MASK_METHOD

See Also:

• Constant Field Values

method

int method

resultImage

private ModelImage resultImage

DEGREES

public static final int DEGREES

used for setting rotation

See Also:

• Constant Field Values

RADIANS

public static final int RADIANS

used for setting rotation

See Also:

• Constant Field Values

run2D

private boolean run2D

Constructor Details

AlgorithmCropTilted

public AlgorithmCropTilted(ModelImage srcImage,
 double x1,
 double y1,
 double x2,
 double y2,
 double x3,
 double y3,
 double x4,
 double y4,
 int method)

Rotate tilted rectangle to remove tilt and crop rectangle.

Parameters:

srcImage - original image

x1 -

y1 -

x2 -

y2 -

x3 -

y3 -

x4 -

y4 -

AlgorithmCropTilted

public AlgorithmCropTilted(ModelImage srcImage,
 double x1,
 double y1,
 double z1,
 double x2,
 double y2,
 double z2,
 double x3,
 double y3,
 double z3,
 double x4,
 double y4,
 double z4,
 double x5,
 double y5,
 double z5,
 double x6,
 double y6,
 double z6,
 double x7,
 double y7,
 double z7,
 double x8,
 double y8,
 double z8,
 int method)

Rotate tilted cuboid to remove tilt and crop cuboid.

Parameters:

srcImage - original image

x1 -

y1 -

z1 -

x2 -

y2 -

z2 -

x3 -

y3 -

z3 -

x4 -

y4 -

z4 -

x5 -

y5 -

z5 -

x6 -

y6 -

z6 -

x7 -

y7 -

z7 -

x8 -

y8 -

z8 -

Method Details

runAlgorithm

public void runAlgorithm()

Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

getResultImage

public ModelImage getResultImage()