Package gov.nih.mipav.view.renderer.WildMagic.Knees

Class JDialogKnees2DSlicesAtlasPngConverter

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.renderer.WildMagic.Knees.JDialogKnees2DSlicesAtlasPngConverter
All Implemented Interfaces:
AlgorithmInterface, DialogDefaultsInterface, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogKnees2DSlicesAtlasPngConverter extends JDialogBase implements AlgorithmInterface
This class convert the 3D images to 2D slices based png files for single MRI GRE image alone. Users specify the 3D knees images dir, and output 2D slices based dir, the algorithm auto convert each 3D image to 2D slices with corresponding VOIs. ------------------------------------------------------------------------ This file is no longer being used. Just for the backup purpose for now. ------------------------------------------------------------------------
Author:
Ruida Cheng
See Also:

  • Field Details

    • serialVersionUID

      private static final long serialVersionUID
      See Also:

    • UI

      private ViewUserInterface UI
      The main user interface.

    • labelKeyImage

      private JLabel labelKeyImage
      key image directory.

    • textFieldKeyImage

      private JTextField textFieldKeyImage

    • buttonKeyImage

      private JButton buttonKeyImage

    • imageSelectionPanel

      private JPanel imageSelectionPanel

    • keyImages

      private Vector<ModelImage> keyImages
      image vector to hold the actual images.

    • keyImageVOIs

      private Vector<VOI[]> keyImageVOIs
      voi vector to hold the actual vois.

    • keyImageVector1

      private Vector<String> keyImageVector1

    • keyImageVOIVector1

      private Vector<String> keyImageVOIVector1

    • keyImageVector2

      private Vector<String> keyImageVector2

    • keyImageVOIVector2

      private Vector<String> keyImageVOIVector2

    • keyImageVector3

      private Vector<String> keyImageVector3

    • keyImageVOIVector3

      private Vector<String> keyImageVOIVector3

    • keyImageVector4

      private Vector<String> keyImageVector4

    • keyImageVOIVector4

      private Vector<String> keyImageVOIVector4

    • keyImageVector5

      private Vector<String> keyImageVector5

    • keyImageVOIVector5

      private Vector<String> keyImageVOIVector5

    • cropKeyImages

      private Vector<ModelImage> cropKeyImages
      cropped key image vector.

    • labelSaveImage

      private JLabel labelSaveImage
      saved 2D slices atlas dir.

    • textFieldSaveImage

      private JTextField textFieldSaveImage

    • buttonSaveImage

      private JButton buttonSaveImage

    • saveImageChooser

      private JFileChooser saveImageChooser

    • saveImageDirectory

      private String saveImageDirectory

  • Constructor Details

    • JDialogKnees2DSlicesAtlasPngConverter

      public JDialogKnees2DSlicesAtlasPngConverter(Frame theParentFrame)
      Constructor.
      Parameters:
      theParentFrame -

  • Method Details

    • disposeLocal

      public void disposeLocal()
      dispose memory

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Dialog local actionPerformed handler.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase

    • recordSaveImageDir

      private void recordSaveImageDir()
      Let user specify the saved 2D slices atlas, record the save directory.

    • readKeyImageDir

      private void readKeyImageDir()
      Read 3D images atlas directory.

    • traverse_folder_knees

      private void traverse_folder_knees(File dir)

    • processDir_folder_knees

      private void processDir_folder_knees(File dir)

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithms when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • callAlgorithm

      public void callAlgorithm()
      Driver function to read image and VOIs, and convert each 3D image to 2D slices.

    • saveImages

      public void saveImages()
      Save the 2D slices and VOIs to user specified dir.

    • savePNGfile

      private void savePNGfile(String dirName, String fileName, ModelImage srcImage, float minIntensity, float maxIntensity, boolean isMask)

    • smoothVOI60

      public void smoothVOI60(ModelImage maskImage, ModelImage resultImage)
      Smooth VOIs to 60 points.
      Parameters:
      maskImage -
      resultImage -

    • loadFiles

      public void loadFiles()
      load image files and voi files

    • readFile

      public void readFile()

    • init

      public void init()
      Initial panel

    • buildKeyImagePanel

      public void buildKeyImagePanel()
      Panel contains both the 3D image dir and saved 2D slices atlas dir.