Package gov.nih.mipav.view.dialogs

Class JDialogTamuraTexture

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JDialog

        javax.swing.JDialog.AccessibleJDialog

      • Nested classes/interfaces inherited from class java.awt.Dialog

        java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

      • Nested classes/interfaces inherited from class java.awt.Window

        java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      void algorithmPerformed​(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented.
      protected void callAlgorithm()
      Once all the necessary variables are set, call the Tamura Texture algorithm.
      ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      private int getNumOperators()
      DOCUMENT ME!
      java.lang.String getOutputImageName​(java.lang.String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      ModelImage[] getResultImage()
      Accessor that returns the image.
      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.
      boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      void setCoarsenessThreshold​(double coarsenessThreshold)
      Accessor that sets coarseness threshold
      void setCSize​(int cSize)
      Accessor that sets size of neighborhood window for pixel contrast calculations
      void setDoCoarseness​(boolean doCoarseness)
      Accessor that sets if coarseness is calculated
      void setDoContrast​(boolean doContrast)
      Accessor that sets if contrast is calculated
      void setDoDirectionality​(boolean doDirectionality)
      Accessor that sets if directionality is calculated
      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      void setHistogramBins​(int histogramBins)
      Accessor that sets number of histogram bins used in slice directionality calculation
      void setHistogramThreshold​(double histogramThreshold)
      Accessor that sets the gradient magnitude threshold reuqired for putting a gradient direction into a histogram bin in the slice directionality calculation
      void setRGBOffset​(int RGBoffset)
      Accessor that sets the RGBOffset.
      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      protected void storeParamsFromGUI()
      Record the parameters just used to run this algorithm in a script.

      • Methods inherited from class javax.swing.JDialog

        addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

      • Methods inherited from class java.awt.Dialog

        addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, show, toBack

      • Methods inherited from class java.awt.Window

        addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • colorPanel

        private javax.swing.JPanel colorPanel
        DOCUMENT ME!

      • colorGroup

        private javax.swing.ButtonGroup colorGroup
        DOCUMENT ME!

      • redButton

        private javax.swing.JRadioButton redButton
        DOCUMENT ME!

      • greenButton

        private javax.swing.JRadioButton greenButton
        DOCUMENT ME!

      • blueButton

        private javax.swing.JRadioButton blueButton
        DOCUMENT ME!

      • RGBOffset

        private int RGBOffset
        DOCUMENT ME!

      • coarsenessThreshold

        private double coarsenessThreshold
        coarsenessThreshold must be = coarsenessThreshold * Emax. If coarsenessThreshold = 1.0, select the largest k which gives Emax.

      • textCoarsenessThreshold

        private javax.swing.JTextField textCoarsenessThreshold

      • labelCoarsenessThreshold

        private javax.swing.JLabel labelCoarsenessThreshold

      • doCoarseness

        private boolean doCoarseness

      • coarsenessCheckBox

        private javax.swing.JCheckBox coarsenessCheckBox

      • doContrast

        private boolean doContrast

      • contrastCheckBox

        private javax.swing.JCheckBox contrastCheckBox

      • cSize

        private int cSize

      • textCSize

        private javax.swing.JTextField textCSize

      • labelCSize

        private javax.swing.JLabel labelCSize

      • doDirectionality

        private boolean doDirectionality

      • directionalityCheckBox

        private javax.swing.JCheckBox directionalityCheckBox

      • histogramBins

        private int histogramBins

      • textHistogramBins

        private javax.swing.JTextField textHistogramBins

      • labelHistogramBins

        private javax.swing.JLabel labelHistogramBins

      • histogramThreshold

        private double histogramThreshold

      • textHistogramThreshold

        private javax.swing.JTextField textHistogramThreshold

      • labelHistogramThreshold

        private javax.swing.JLabel labelHistogramThreshold

      • numOperators

        private int numOperators
        DOCUMENT ME!

      • resultImage

        private ModelImage[] resultImage
        DOCUMENT ME!

    • Constructor Detail

      • JDialogTamuraTexture

        public JDialogTamuraTexture()
        Empty constructor needed for dynamic instantiation.

      • JDialogTamuraTexture

        public JDialogTamuraTexture​(java.awt.Frame theParentFrame,
                            ModelImage im)
        Creates a new JDialogTamuraTexture object.
        Parameters:
        theParentFrame - Parent frame.
        im - Source image.

    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent event)
        Closes dialog box when the OK button is pressed and calls the algorithm.
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
        Overrides:
        actionPerformed in class JDialogBase
        Parameters:
        event - Event that triggers function.

      • algorithmPerformed

        public void algorithmPerformed​(AlgorithmBase algorithm)
        This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
        Specified by:
        algorithmPerformed in interface AlgorithmInterface
        Parameters:
        algorithm - Algorithm that caused the event.

      • getResultImage

        public ModelImage[] getResultImage()
        Accessor that returns the image.
        Returns:
        The result image.

      • setDoCoarseness

        public void setDoCoarseness​(boolean doCoarseness)
        Accessor that sets if coarseness is calculated
        Parameters:
        doCoarseness -

      • setCoarsenessThreshold

        public void setCoarsenessThreshold​(double coarsenessThreshold)
        Accessor that sets coarseness threshold
        Parameters:
        coarsenessThreshold -

      • setDoContrast

        public void setDoContrast​(boolean doContrast)
        Accessor that sets if contrast is calculated
        Parameters:
        doContrast -

      • setCSize

        public void setCSize​(int cSize)
        Accessor that sets size of neighborhood window for pixel contrast calculations
        Parameters:
        cSize -

      • setDoDirectionality

        public void setDoDirectionality​(boolean doDirectionality)
        Accessor that sets if directionality is calculated
        Parameters:
        doDirectionality -

      • setHistogramBins

        public void setHistogramBins​(int histogramBins)
        Accessor that sets number of histogram bins used in slice directionality calculation
        Parameters:
        histogramBins -

      • setHistogramThreshold

        public void setHistogramThreshold​(double histogramThreshold)
        Accessor that sets the gradient magnitude threshold reuqired for putting a gradient direction into a histogram bin in the slice directionality calculation
        Parameters:
        histogramThreshold -

      • setRGBOffset

        public void setRGBOffset​(int RGBoffset)
        Accessor that sets the RGBOffset.
        Parameters:
        RGBoffset - DOCUMENT ME!

      • callAlgorithm

        protected void callAlgorithm()
        Once all the necessary variables are set, call the Tamura Texture algorithm.
        Specified by:
        callAlgorithm in class JDialogScriptableBase

      • doPostAlgorithmActions

        protected void doPostAlgorithmActions()
        Store the result image in the script runner's image table now that the action execution is finished.
        Overrides:
        doPostAlgorithmActions in class JDialogScriptableBase

      • setGUIFromParams

        protected void setGUIFromParams()
        Set the dialog GUI using the script parameters while running this algorithm as part of a script.
        Specified by:
        setGUIFromParams in class JDialogScriptableBase

      • getNumOperators

        private int getNumOperators()
        DOCUMENT ME!
        Returns:
        DOCUMENT ME!

      • init

        private void init()
        Sets up the GUI (panels, buttons, etc) and displays it on the screen.

      • setVariables

        private boolean setVariables()
        Use the GUI results to set up the variables needed to run the algorithm.
        Returns:
        true if parameters set successfully, false otherwise.

      • getActionMetadata

        public ActionMetadata getActionMetadata()
        Return meta-information about this discoverable action for categorization and labeling purposes.
        Specified by:
        getActionMetadata in interface ActionDiscovery
        Returns:
        Metadata for this action.

      • createInputParameters

        public ParameterTable createInputParameters()
        Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
        Specified by:
        createInputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the inputs of this algorithm.

      • createOutputParameters

        public ParameterTable createOutputParameters()
        Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
        Specified by:
        createOutputParameters in interface ActionDiscovery
        Returns:
        A parameter table listing the outputs of this algorithm.

      • getOutputImageName

        public java.lang.String getOutputImageName​(java.lang.String imageParamName)
        Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
        Specified by:
        getOutputImageName in interface ActionDiscovery
        Parameters:
        imageParamName - The output image parameter label for which to get the image name.
        Returns:
        The image name of the requested output image parameter label.

      • isActionComplete

        public boolean isActionComplete()
        Returns whether the action has successfully completed its execution.
        Specified by:
        isActionComplete in interface ActionDiscovery
        Returns:
        True, if the action is complete. False, if the action failed or is still running.