Package gov.nih.mipav.view.dialogs

Class JDialogTamuraTexture

java.lang.Object
java.awt.Component
java.awt.Container
java.awt.Window
java.awt.Dialog
javax.swing.JDialog
gov.nih.mipav.view.dialogs.JDialogBase
gov.nih.mipav.view.dialogs.JDialogScriptableBase
gov.nih.mipav.view.dialogs.JDialogTamuraTexture
All Implemented Interfaces:
AlgorithmInterface, ScriptableActionInterface, DialogDefaultsInterface, ActionDiscovery, ActionListener, FocusListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
public class JDialogTamuraTexture extends JDialogScriptableBase implements AlgorithmInterface, ActionDiscovery, ScriptableActionInterface
Dialog to get user input, then call the algorithm.
Version:
0.1 July 6, 2012
Author:
William Gandler
See Also:

  • Field Details

    • RED_OFFSET

      private static final int RED_OFFSET
      Red channel.
      See Also:

    • GREEN_OFFSET

      private static final int GREEN_OFFSET
      Green channel.
      See Also:

    • BLUE_OFFSET

      private static final int BLUE_OFFSET
      Blue channel.
      See Also:

    • colorPanel

      private JPanel colorPanel
      DOCUMENT ME!

    • colorGroup

      private ButtonGroup colorGroup
      DOCUMENT ME!

    • redButton

      private JRadioButton redButton
      DOCUMENT ME!

    • greenButton

      private JRadioButton greenButton
      DOCUMENT ME!

    • blueButton

      private JRadioButton blueButton
      DOCUMENT ME!

    • RGBOffset

      private int RGBOffset
      DOCUMENT ME!

    • coarsenessThreshold

      private double coarsenessThreshold
      coarsenessThreshold must be invalid input: '<'= 1.0. If coarsenessThreshold invalid input: '<' 1.0, select the largest k for which Ek >= coarsenessThreshold * Emax. If coarsenessThreshold = 1.0, select the largest k which gives Emax.

    • textCoarsenessThreshold

      private JTextField textCoarsenessThreshold

    • labelCoarsenessThreshold

      private JLabel labelCoarsenessThreshold

    • doCoarseness

      private boolean doCoarseness

    • coarsenessCheckBox

      private JCheckBox coarsenessCheckBox

    • doContrast

      private boolean doContrast

    • contrastCheckBox

      private JCheckBox contrastCheckBox

    • cSize

      private int cSize

    • textCSize

      private JTextField textCSize

    • labelCSize

      private JLabel labelCSize

    • doDirectionality

      private boolean doDirectionality

    • directionalityCheckBox

      private JCheckBox directionalityCheckBox

    • histogramBins

      private int histogramBins

    • textHistogramBins

      private JTextField textHistogramBins

    • labelHistogramBins

      private JLabel labelHistogramBins

    • histogramThreshold

      private double histogramThreshold

    • textHistogramThreshold

      private JTextField textHistogramThreshold

    • labelHistogramThreshold

      private JLabel labelHistogramThreshold

    • image

      private ModelImage image
      DOCUMENT ME!

    • numOperators

      private int numOperators
      DOCUMENT ME!

    • resultImage

      private ModelImage[] resultImage
      DOCUMENT ME!

    • textureAlgo

      private AlgorithmTamuraTexture textureAlgo
      DOCUMENT ME!

  • Constructor Details

    • JDialogTamuraTexture

      public JDialogTamuraTexture()
      Empty constructor needed for dynamic instantiation.

    • JDialogTamuraTexture

      public JDialogTamuraTexture(Frame theParentFrame, ModelImage im)
      Creates a new JDialogTamuraTexture object.
      Parameters:
      theParentFrame - Parent frame.
      im - Source image.

  • Method Details

    • actionPerformed

      public void actionPerformed(ActionEvent event)
      Closes dialog box when the OK button is pressed and calls the algorithm.
      Specified by:
      actionPerformed in interface ActionListener
      Overrides:
      actionPerformed in class JDialogBase
      Parameters:
      event - Event that triggers function.

    • algorithmPerformed

      public void algorithmPerformed(AlgorithmBase algorithm)
      This method is required if the AlgorithmPerformed interface is implemented. It is called by the algorithm when it has completed or failed to to complete, so that the dialog can be display the result image and/or clean up.
      Specified by:
      algorithmPerformed in interface AlgorithmInterface
      Parameters:
      algorithm - Algorithm that caused the event.

    • getResultImage

      public ModelImage[] getResultImage()
      Accessor that returns the image.
      Returns:
      The result image.

    • setDoCoarseness

      public void setDoCoarseness(boolean doCoarseness)
      Accessor that sets if coarseness is calculated
      Parameters:
      doCoarseness -

    • setCoarsenessThreshold

      public void setCoarsenessThreshold(double coarsenessThreshold)
      Accessor that sets coarseness threshold
      Parameters:
      coarsenessThreshold -

    • setDoContrast

      public void setDoContrast(boolean doContrast)
      Accessor that sets if contrast is calculated
      Parameters:
      doContrast -

    • setCSize

      public void setCSize(int cSize)
      Accessor that sets size of neighborhood window for pixel contrast calculations
      Parameters:
      cSize -

    • setDoDirectionality

      public void setDoDirectionality(boolean doDirectionality)
      Accessor that sets if directionality is calculated
      Parameters:
      doDirectionality -

    • setHistogramBins

      public void setHistogramBins(int histogramBins)
      Accessor that sets number of histogram bins used in slice directionality calculation
      Parameters:
      histogramBins -

    • setHistogramThreshold

      public void setHistogramThreshold(double histogramThreshold)
      Accessor that sets the gradient magnitude threshold reuqired for putting a gradient direction into a histogram bin in the slice directionality calculation
      Parameters:
      histogramThreshold -

    • setRGBOffset

      public void setRGBOffset(int RGBoffset)
      Accessor that sets the RGBOffset.
      Parameters:
      RGBoffset - DOCUMENT ME!

    • callAlgorithm

      protected void callAlgorithm()
      Once all the necessary variables are set, call the Tamura Texture algorithm.
      Specified by:
      callAlgorithm in class JDialogScriptableBase

    • doPostAlgorithmActions

      protected void doPostAlgorithmActions()
      Store the result image in the script runner's image table now that the action execution is finished.
      Overrides:
      doPostAlgorithmActions in class JDialogScriptableBase

    • setGUIFromParams

      protected void setGUIFromParams()
      Set the dialog GUI using the script parameters while running this algorithm as part of a script.
      Specified by:
      setGUIFromParams in class JDialogScriptableBase

    • storeParamsFromGUI

      protected void storeParamsFromGUI() throws ParserException
      Record the parameters just used to run this algorithm in a script.
      Specified by:
      storeParamsFromGUI in class JDialogScriptableBase
      Throws:
      ParserException - If there is a problem creating/recording the new parameters.

    • getNumOperators

      private int getNumOperators()
      DOCUMENT ME!
      Returns:
      DOCUMENT ME!

    • init

      private void init()
      Sets up the GUI (panels, buttons, etc) and displays it on the screen.

    • setVariables

      private boolean setVariables()
      Use the GUI results to set up the variables needed to run the algorithm.
      Returns:
      true if parameters set successfully, false otherwise.

    • getActionMetadata

      public ActionMetadata getActionMetadata()
      Return meta-information about this discoverable action for categorization and labeling purposes.
      Specified by:
      getActionMetadata in interface ActionDiscovery
      Returns:
      Metadata for this action.

    • createInputParameters

      public ParameterTable createInputParameters()
      Returns a table listing the input parameters of this algorithm (which should match up with the scripting parameters used in setGUIFromParams()).
      Specified by:
      createInputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the inputs of this algorithm.

    • createOutputParameters

      public ParameterTable createOutputParameters()
      Returns a table listing the output parameters of this algorithm (usually just labels used to obtain output image names later).
      Specified by:
      createOutputParameters in interface ActionDiscovery
      Returns:
      A parameter table listing the outputs of this algorithm.

    • getOutputImageName

      public String getOutputImageName(String imageParamName)
      Returns the name of an image output by this algorithm, the image returned depends on the parameter label given (which can be used to retrieve the image object from the image registry).
      Specified by:
      getOutputImageName in interface ActionDiscovery
      Parameters:
      imageParamName - The output image parameter label for which to get the image name.
      Returns:
      The image name of the requested output image parameter label.

    • isActionComplete

      public boolean isActionComplete()
      Returns whether the action has successfully completed its execution.
      Specified by:
      isActionComplete in interface ActionDiscovery
      Returns:
      True, if the action is complete. False, if the action failed or is still running.