java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - gov.nih.mipav.view.ViewJComponentBase
      - gov.nih.mipav.view.ViewJComponentEditImage
        
        gov.nih.mipav.view.ViewJComponentSingleRegistration

All Implemented Interfaces:

PaintGrowListener, ScreenCoordinateListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener
```
public class ViewJComponentSingleRegistration
extends ViewJComponentEditImage
```
Extended version of ViewJComponentEditImage, used ONLY within the ViewJFrameRegistrationTool This class is tailored to support Reference and Adjusted markers for use with Least Squares and Thin Plate Splines registration operations.

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JComponent
  javax.swing.JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`centerPtLocation`	location of the center pt VOI (for registration rotation).
`private boolean`	`isReference`	if the image is in a registration window, is the image the reference (and not the adjusted).
`private float[]`	`ptCoord`	Temporary buffer used when extracting points from a VOI.
`private static long`	`serialVersionUID`	Use serialVersionUID for interoperability.
`private int[]`	`xCoords`	Buffers used to save the X coordinates for the points that make up a VOI.
`private int[]`	`yCoords`	Buffers used to save the Y coordinates for the points that make up a VOI.

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage
ACTIVE_IMAGE_COLOR, allActive, alphaBlend, alphaPrime, checkerDialog, cleanImageBufferA, cleanImageBufferB, crosshairCursor, cursorMode, displayFuzzy, drawVOIs, frame, frameControls, fuzzyThreshold, GEOMETRIC_ZOOM, gridColor, gridLabelingOn, gridLabelOrientation, gridOverlayOn, gridSpacingX, gridSpacingY, growDialog, imageA, imageActive, imageB, imageBufferA, imageBufferActive, imageBufferB, imageExtents, imageStatList, intensityDropper, less, lessB, lessG, lessR, LINEAR_ZOOM, logMagDisplay, LUTa, LUTb, m_kPatientSlice, m_kWinLevel, MAGR_HEIGHT, MAGR_MAG, MAGR_WIDTH, magSettings, maxDistance, maxExtents, modifyFlag, more, moreB, moreG, moreR, mousePressIsShiftDown, MultiFrameEyetrackerMode, nColumnCheckers, nRowCheckers, onTop, orientation, overlayOn, paintBitmap, paintBitmapBU, paintBitmapSwitch, paintBrush, paintBrushDim, paintBrushDimPrevious, paintBrushPrevious, paintBrushSize, paintBuffer, paintImage, paintImagePrevious, pixBuffer, pixBufferB, PluginEyetrackerMode, previousPaintBrush, rgbString, RGBTA, RGBTB, saveValue, saveValueB, saveValueG, saveValueR, saveX, saveY, saveZ, seedPaintBitmap, seedVal, seedValB, seedValG, seedValR, SingleFrameEyetrackerMode, sizeLimit, slice, stringOverride, time, timeSlice, toppedColor, useBComp, useGComp, useRComp, useVOI, variableThresholds, visRect, voiManager, winLevel, winLevelSet, xMod, xPG, xStart, yMod, yPG, yStart, zPG

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase
ANNOTATION, BOTH, CENTER_VOI, CUBE_BOUNDS, DEFAULT, DELETE_POINT, DROPPER_PAINT, ELLIPSE, ERASER_PAINT, IMAGE_A, IMAGE_B, imageDim, img, imgB, interpMode, INTERPOLATE_A, INTERPOLATE_B, INTERPOLATE_BOTH, lastMouseX, lastMouseY, LEVELSET, LINE, LIVEWIRE, MAG_REGION, memImageA, memImageB, MOVE, MOVE_INTERSECTION_POINT, MOVE_POINT, MOVE_VOIPOINT, NEAREST_BOTH, NEW_POINT, NEW_VOI, OUT_OF_BOUNDS, PAINT_CAN, PAINT_VASC, PAINT_VOI, POINT_VOI, POLYLINE, POLYLINE_SLICE_VOI, PROBE, PROTRACTOR, QUICK_LUT, RECTANGLE, RECTANGLE3D, resolutionX, resolutionY, RETRACE, ROTATE, SELECT, showSliceNumber, sliceString, SMOOTH, SPLIT_VOI, textColor, TRANSLATE, VOI_3D, WAND, WIN_REGION, ZOOMING_IN, ZOOMING_OUT, zoomX, zoomY

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor	Description
`ViewJComponentSingleRegistration(ViewJFrameBase _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, boolean isReference)`	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getCenterPtLocation()`	Gets the center point of rotation.
`int`	`getNumPoints()`	Finds the number of points in the active VOI contour.
`VOI`	`getPointVOI()`	All VOIPoints are stored in one VOI contained in this class.
`int[]`	`getXCoords()`	Returns an array containing the list of X coordinates for the VOIPoints.
`int[]`	`getYCoords()`	Returns an array containing the list of Y coordinates for the VOIPoints.
`boolean`	`isReference()`	Returns true if this is the reference image.
`void`	`resetAdjustableVOIs(double[][] pointSetA, double[][] pointSetB)`	Resets all of the VOIPoint's by moving them from pointSet A to point set B.
`void`	`setCenterPtLocation(int centerPtLoc)`	Sets the center point of rotation to this location.
`void`	`setPointVOI(VOI newVOI)`	All VOIPoints are stored in one VOI contained in this class.
`void`	`setRotate(TransMatrix kMat)`	Sets the TransMatrix for the set of VOIPoints contained in this class.

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage
calcPaintedVolume, cine, commitMask, commitMask, commitMask, commitMask, commitPaintToMask, commitPaintToUbyteMask, createImg, createImg, ctMode, dispose, disposeLocal, downSlice, draw3DVOIs, drawGradicules, drawStringBW, eraseAllPaint, fileToScreen, fileToScreenVOI, finalize, getActiveImage, getActiveImageBuffer, getActiveImageSliceBuffer, getActiveLUT, getActiveRGB, getAlphaBlend, getBandSpacing, getBrushSize, getCleanImageBufferB, getCursorMode, getFrame, getGridColor, getGridLabeling, getGridLabelOrientation, getGridOverlay, getGridSpacingX, getGridSpacingY, getHBrushSize, getImageA, getImageB, getImageBufferA, getImageBufferB, getIntensityDropper, getLUTa, getLUTb, getMaxExtents, getModifyFlag, getnVOI, getOpacity, getOrientation, getOverlayOn, getPaintBitmap, getPaintBuffer, getPaintMask, getPixBuffer, getPixBufferB, getRASScannerPositionLabels, getRGBPaintComponents, getRGBTA, getRGBTB, getScannerPositionLabels, getShowMagIntensityEnabled, getSlice, getTimeSlice, getVOIHandler, getVOIManager, getxMod, getxSep, getxStart, getyMod, getySep, getyStart, getZoomMagnitudeX, getZoomMagnitudeY, isCheckerboardAnimate, isCheckerboarded, isHighlight, isMakingCheckerboard, isZeroToOneLUTAdj, loadPaintBrush, loopBandSpacing, loopBandSpacingReverse, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mousePressedPaint, mouseReleased, mouseWheelMoved, openUDLUTandTransferFunct, paintComponent, paintComponentForPrinter, paintMagComponent, patientToScreen, patientToScreenVOI, performPaint, performPaint, processDefaultMouseDrag, quickSwitchBrush, readLUTandTFunctFrom, recordPanning, recordZoom, regionGrow, regionGrow, regionGrow, regionGrow, regionGrow, regionGrowColor, rememberPaintBrushSize, resetLUT, resetLUTs, resetPaintBrushSize, restartCheckerboardAnimateThread, saveLUTandTransferFunction, saveUDLUT, screenToFile, screenToFile, screenToFile, screenToFileVOI, screenToFileVOI, screenToFileVOI, setActiveImage, setAlphaBlend, setBandSpacing, setBuffers, setCenter, setCheckerboard, setCheckerboardAnimate, setCrosshairCursor, setCursorMode, setDisplayFuzzy, setDrawVOIs, setEnabled, setEyetrackerRecordingMode, setEyetrackerRecordMode, setFrameControls, setFullScreenModeLocation, setFuzzyThreshold, setGridColor, setGridLabelingOn, setGridLabelOrientation, setGridOverlay, setGridSpacingX, setGridSpacingY, setGrowDialog, setHasThreshold1, setHasThreshold2, setHighlightColor, setImageA, setImageB, setImageBufferB, setImageColocalize, setImageExtents, setImageSlice, setIntensityDropper, setLess, setLessB, setLessG, setLessR, setLogMagDisplay, setLUTa, setLUTb, setMakingCheckerboard, setMaxDistance, setModifyFlag, setMore, setMoreB, setMoreG, setMoreR, setOverlay, setPaintBitmapSwitch, setPaintBrushSize, setPaintMask, setPixelInformationAtLocation, setRegionGrowVars, setRGBPaintComponents, setRGBTA, setRGBTB, setShowMagIntensity, setShowSliceNum, setSizeLimit, setSlice, setStringOverride, setThresholdColors, setThresholds, setTimeSlice, setUseVOI, setVariableThresholds, setVOIManager, setWindLevel, setxSep, setySep, setZeroToOneLUTAdj, show, show, show, showBlank, showGridOverlay, showOverlay, showRegionInfo, showRegionInfo, showRegionInfo, showStatisticsCalculator, undoLastPaint, updatePaint, updatePaintBrushCursor, upSlice, useHighlight

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUI, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateUI

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAccessibleContext, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener
getHeight, getResolutionX, getResolutionY, getWidth, getZoomX, getZoomY

- Field Detail
  - serialVersionUID
```
private static final long serialVersionUID
```
    Use serialVersionUID for interoperability.
    
    See Also:
    
    Constant Field Values
  - centerPtLocation
```
private int centerPtLocation
```
    location of the center pt VOI (for registration rotation).
  - isReference
```
private boolean isReference
```
    if the image is in a registration window, is the image the reference (and not the adjusted).
  - ptCoord
```
private float[] ptCoord
```
    Temporary buffer used when extracting points from a VOI. Save reallocating memory often.
  - xCoords
```
private int[] xCoords
```
    Buffers used to save the X coordinates for the points that make up a VOI.
  - yCoords
```
private int[] yCoords
```
    Buffers used to save the Y coordinates for the points that make up a VOI.
- Constructor Detail
  - ViewJComponentSingleRegistration
```
public ViewJComponentSingleRegistration(ViewJFrameBase _frame,
                                        ModelImage _imageA,
                                        ModelLUT _LUTa,
                                        float[] imgBufferA,
                                        int[] pixelBuffer,
                                        float zoom,
                                        int[] extents,
                                        boolean logMagDisplay,
                                        int _orientation,
                                        boolean isReference)
```
    Constructor: ImageA and ImageB are expected to be of the same dimensionality !!
    
    Parameters:
    
    _frame - frame where image(s) will be displayed
    
    _imageA - Model of the image that will be displayed
    
    _LUTa - LUT used to display imageA
    
    imgBufferA - storage buffer used to display image A
    
    pixelBuffer - storage buffer used to build a displayable image
    
    zoom - initial magnification of image
    
    extents - initial display dimensions of the image
    
    logMagDisplay - display log magnitude of image
    
    _orientation - orientation of the image
    
    isReference - DOCUMENT ME!
- Method Detail
  - getCenterPtLocation
```
public int getCenterPtLocation()
```
    Gets the center point of rotation.
    
    Returns:
    
    int
  - getNumPoints
```
public int getNumPoints()
```
    Finds the number of points in the active VOI contour.
    
    Overrides:
    
    getNumPoints in class ViewJComponentEditImage
    
    Returns:
    
    the number of points in the selected VOI
  - getPointVOI
```
public VOI getPointVOI()
```
    All VOIPoints are stored in one VOI contained in this class. This function returns that VOI.
    
    Returns:
    
    VOI for the VOIPoints in this class.
  - setPointVOI
```
public void setPointVOI(VOI newVOI)
```
    All VOIPoints are stored in one VOI contained in this class. This function sets that VOI used when the user copies VOIPoints from the reference to the adjustable image or vice versa.
    
    Parameters:
    
    newVOI - new set of VOIPoints.
  - getXCoords
```
public int[] getXCoords()
```
    Returns an array containing the list of X coordinates for the VOIPoints.
    
    Returns:
    
    int[] list of x coordinates
  - getYCoords
```
public int[] getYCoords()
```
    Returns an array containing the list of Y coordinates for the VOIPoints.
    
    Returns:
    
    int[] list of y coordinates
  - setRotate
```
public void setRotate(TransMatrix kMat)
```
    Sets the TransMatrix for the set of VOIPoints contained in this class.
    
    Parameters:
    
    kMat - new TransMatrix
  - isReference
```
public boolean isReference()
```
    Returns true if this is the reference image.
    
    Returns:
    
    true if this is the reference image.
  - resetAdjustableVOIs
```
public void resetAdjustableVOIs(double[][] pointSetA,
                                double[][] pointSetB)
```
    Resets all of the VOIPoint's by moving them from pointSet A to point set B.
    
    Parameters:
    
    pointSetA - current VOIPoints locations
    
    pointSetB - locations to where the VOIPoints should be moved
  - setCenterPtLocation
```
public void setCenterPtLocation(int centerPtLoc)
```
    Sets the center point of rotation to this location.
    
    Parameters:
    
    centerPtLoc - int

Class ViewJComponentSingleRegistration

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage

Methods inherited from class gov.nih.mipav.view.ViewJComponentBase

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

Field Detail

serialVersionUID

centerPtLocation

isReference

ptCoord

xCoords

yCoords

Constructor Detail

ViewJComponentSingleRegistration

Method Detail

getCenterPtLocation

getNumPoints

getPointVOI

setPointVOI

getXCoords

getYCoords

setRotate

isReference

resetAdjustableVOIs

setCenterPtLocation