Package gov.nih.mipav.view

Class ViewJComponentSingleRegistration

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

gov.nih.mipav.view.ViewJComponentBase

gov.nih.mipav.view.ViewJComponentEditImage

gov.nih.mipav.view.ViewJComponentSingleRegistration

All Implemented Interfaces:

PaintGrowListener, ScreenCoordinateListener, MouseListener, MouseMotionListener, MouseWheelListener, ImageObserver, MenuContainer, Serializable, EventListener

public class ViewJComponentSingleRegistration
extends ViewJComponentEditImage

Extended version of ViewJComponentEditImage, used ONLY within the ViewJFrameRegistrationTool This class is tailored to support Reference and Adjusted markers for use with Least Squares and Thin Plate Splines registration operations.

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private int	centerPtLocation	location of the center pt VOI (for registration rotation).
private boolean	isReference	if the image is in a registration window, is the image the reference (and not the adjusted).
private float[]	ptCoord	Temporary buffer used when extracting points from a VOI.
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
private int[]	xCoords	Buffers used to save the X coordinates for the points that make up a VOI.
private int[]	yCoords	Buffers used to save the Y coordinates for the points that make up a VOI.

Fields inherited from class gov.nih.mipav.view.ViewJComponentEditImage

ACTIVE_IMAGE_COLOR, allActive, alphaBlend, alphaPrime, checkerDialog, cleanImageBufferA, cleanImageBufferB, crosshairCursor, cursorMode, displayFuzzy, drawVOIs, frame, frameControls, fuzzyThreshold, GEOMETRIC_ZOOM, gridColor, gridLabelingOn, gridLabelOrientation, gridOverlayOn, gridSpacingX, gridSpacingY, growDialog, imageA, imageActive, imageB, imageBufferA, imageBufferActive, imageBufferB, imageExtents, imageStatList, intensityDropper, less, lessB, lessG, lessR, LINEAR_ZOOM, logMagDisplay, LUTa, LUTb, m_kPatientSlice, m_kWinLevel, MAGR_HEIGHT, MAGR_MAG, MAGR_WIDTH, magSettings, maxDistance, maxExtents, modifyFlag, more, moreB, moreG, moreR, mousePressIsShiftDown, MultiFrameEyetrackerMode, nColumnCheckers, nRowCheckers, onTop, orientation, overlayOn, paintBitmap, paintBitmapBU, paintBitmapSwitch, paintBrush, paintBrushDim, paintBrushDimPrevious, paintBrushPrevious, paintBrushSize, paintBuffer, paintImage, paintImagePrevious, pixBuffer, pixBufferB, PluginEyetrackerMode, previousPaintBrush, rgbString, RGBTA, RGBTB, saveValue, saveValueB, saveValueG, saveValueR, saveX, saveY, saveZ, seedPaintBitmap, seedVal, seedValB, seedValG, seedValR, SingleFrameEyetrackerMode, sizeLimit, slice, stringOverride, time, timeSlice, toppedColor, useBComp, useGComp, useRComp, useVOI, variableThresholds, visRect, voiManager, winLevel, winLevelSet, xMod, xPG, xStart, yMod, yPG, yStart, zPG

Fields inherited from class gov.nih.mipav.view.ViewJComponentBase

ANNOTATION, BOTH, CENTER_VOI, CUBE_BOUNDS, DEFAULT, DELETE_POINT, DROPPER_PAINT, ELLIPSE, ERASER_PAINT, IMAGE_A, IMAGE_B, imageDim, img, imgB, interpMode, INTERPOLATE_A, INTERPOLATE_B, INTERPOLATE_BOTH, lastMouseX, lastMouseY, LEVELSET, LINE, LIVEWIRE, MAG_REGION, memImageA, memImageB, MOVE, MOVE_INTERSECTION_POINT, MOVE_POINT, MOVE_VOIPOINT, NEAREST_BOTH, NEW_POINT, NEW_VOI, OUT_OF_BOUNDS, PAINT_CAN, PAINT_VASC, PAINT_VOI, POINT_VOI, POLYLINE, POLYLINE_SLICE_VOI, PROBE, PROTRACTOR, QUICK_LUT, RECTANGLE, RECTANGLE3D, resolutionX, resolutionY, RETRACE, ROTATE, SELECT, showSliceNumber, sliceString, SMOOTH, SPLIT_VOI, textColor, TRANSLATE, VOI_3D, WAND, WIN_REGION, ZOOMING_IN, ZOOMING_OUT, zoomX, zoomY

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
ViewJComponentSingleRegistration(ViewJFrameBase _frame, ModelImage _imageA, ModelLUT _LUTa, float[] imgBufferA, int[] pixelBuffer, float zoom, int[] extents, boolean logMagDisplay, int _orientation, boolean isReference)	Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Method Summary

Modifier and Type	Method	Description
int	getCenterPtLocation()	Gets the center point of rotation.
int	getNumPoints()	Finds the number of points in the active VOI contour.
VOI	getPointVOI()	All VOIPoints are stored in one VOI contained in this class.
int[]	getXCoords()	Returns an array containing the list of X coordinates for the VOIPoints.
int[]	getYCoords()	Returns an array containing the list of Y coordinates for the VOIPoints.
boolean	isReference()	Returns true if this is the reference image.
void	resetAdjustableVOIs(double[][] pointSetA, double[][] pointSetB)	Resets all of the VOIPoint's by moving them from pointSet A to point set B.
void	setCenterPtLocation(int centerPtLoc)	Sets the center point of rotation to this location.
void	setPointVOI(VOI newVOI)	All VOIPoints are stored in one VOI contained in this class.
void	setRotate(TransMatrix kMat)	Sets the TransMatrix for the set of VOIPoints contained in this class.

Methods inherited from class gov.nih.mipav.view.ViewJComponentEditImage

calcPaintedVolume, cine, commitMask, commitMask, commitMask, commitMask, commitPaintToMask, commitPaintToUbyteMask, createImg, createImg, ctMode, dispose, disposeLocal, downSlice, draw3DVOIs, drawGradicules, drawStringBW, eraseAllPaint, fileToScreen, fileToScreenVOI, finalize, getActiveImage, getActiveImageBuffer, getActiveImageSliceBuffer, getActiveLUT, getActiveRGB, getAlphaBlend, getBandSpacing, getBrushSize, getCleanImageBufferB, getCursorMode, getFrame, getGridColor, getGridLabeling, getGridLabelOrientation, getGridOverlay, getGridSpacingX, getGridSpacingY, getHBrushSize, getImageA, getImageB, getImageBufferA, getImageBufferB, getIntensityDropper, getLUTa, getLUTb, getMaxExtents, getModifyFlag, getnVOI, getOpacity, getOrientation, getOverlayOn, getPaintBitmap, getPaintBuffer, getPaintMask, getPixBuffer, getPixBufferB, getRASScannerPositionLabels, getRGBPaintComponents, getRGBTA, getRGBTB, getScannerPositionLabels, getShowMagIntensityEnabled, getSlice, getTimeSlice, getVOIHandler, getVOIManager, getxMod, getxSep, getxStart, getyMod, getySep, getyStart, getZoomMagnitudeX, getZoomMagnitudeY, isCheckerboardAnimate, isCheckerboarded, isHighlight, isMakingCheckerboard, isZeroToOneLUTAdj, loadPaintBrush, loopBandSpacing, loopBandSpacingReverse, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mousePressedPaint, mouseReleased, mouseWheelMoved, openUDLUTandTransferFunct, paintComponent, paintComponentForPrinter, paintMagComponent, patientToScreen, patientToScreenVOI, performPaint, performPaint, processDefaultMouseDrag, quickSwitchBrush, readLUTandTFunctFrom, recordPanning, recordZoom, regionGrow, regionGrow, regionGrow, regionGrow, regionGrow, regionGrowColor, rememberPaintBrushSize, resetLUT, resetLUTs, resetPaintBrushSize, restartCheckerboardAnimateThread, saveLUTandTransferFunction, saveUDLUT, screenToFile, screenToFile, screenToFile, screenToFileVOI, screenToFileVOI, screenToFileVOI, setActiveImage, setAlphaBlend, setBandSpacing, setBuffers, setCenter, setCheckerboard, setCheckerboardAnimate, setCrosshairCursor, setCursorMode, setDisplayFuzzy, setDrawVOIs, setEnabled, setEyetrackerRecordingMode, setEyetrackerRecordMode, setFrameControls, setFullScreenModeLocation, setFuzzyThreshold, setGridColor, setGridLabelingOn, setGridLabelOrientation, setGridOverlay, setGridSpacingX, setGridSpacingY, setGrowDialog, setHasThreshold1, setHasThreshold2, setHighlightColor, setImageA, setImageB, setImageBufferB, setImageColocalize, setImageExtents, setImageSlice, setIntensityDropper, setLess, setLessB, setLessG, setLessR, setLogMagDisplay, setLUTa, setLUTb, setMakingCheckerboard, setMaxDistance, setModifyFlag, setMore, setMoreB, setMoreG, setMoreR, setOverlay, setPaintBitmapSwitch, setPaintBrushSize, setPaintMask, setPixelInformationAtLocation, setRegionGrowVars, setRGBPaintComponents, setRGBTA, setRGBTB, setShowMagIntensity, setShowSliceNum, setSizeLimit, setSlice, setStringOverride, setThresholdColors, setThresholds, setTimeSlice, setUseVOI, setVariableThresholds, setVOIManager, setWindLevel, setxSep, setySep, setZeroToOneLUTAdj, show, show, show, showBlank, showGridOverlay, showOverlay, showRegionInfo, showRegionInfo, showRegionInfo, showStatisticsCalculator, undoLastPaint, updatePaint, updatePaintBrushCursor, upSlice, useHighlight

Methods inherited from class gov.nih.mipav.view.ViewJComponentBase

disposeLocal, getImage, getInterpMode, getLastMouseX, getLastMouseY, getPreferredSize, getResolutionX, getResolutionY, getScaledX, getScaledY, getSelectedPaintColor, getShowMagIntensityEnabled, getSize, getZoomX, getZoomY, importImage, importImageB, LocalToScreen, makePaintBitmapBorder, makePaintImage, paintCursorBoxComponent, paintWindowComponent, paintWindowComponent, ScreenToLocal, setInterpolationMode, setResolutions, setShowSliceNumber, setSliceString, setTextColor, setZoom, setZoomExact, update

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUI, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateUI

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getAccessibleContext, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.ScreenCoordinateListener

getHeight, getResolutionX, getResolutionY, getWidth, getZoomX, getZoomY

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

centerPtLocation

private int centerPtLocation

location of the center pt VOI (for registration rotation).

isReference

private boolean isReference

if the image is in a registration window, is the image the reference (and not the adjusted).

ptCoord

private float[] ptCoord

Temporary buffer used when extracting points from a VOI. Save reallocating memory often.

xCoords

private int[] xCoords

Buffers used to save the X coordinates for the points that make up a VOI.

yCoords

private int[] yCoords

Buffers used to save the Y coordinates for the points that make up a VOI.

Constructor Details

ViewJComponentSingleRegistration

public ViewJComponentSingleRegistration(ViewJFrameBase _frame,
 ModelImage _imageA,
 ModelLUT _LUTa,
 float[] imgBufferA,
 int[] pixelBuffer,
 float zoom,
 int[] extents,
 boolean logMagDisplay,
 int _orientation,
 boolean isReference)

Constructor: ImageA and ImageB are expected to be of the same dimensionality !!

Parameters:

_frame - frame where image(s) will be displayed

_imageA - Model of the image that will be displayed

_LUTa - LUT used to display imageA

imgBufferA - storage buffer used to display image A

pixelBuffer - storage buffer used to build a displayable image

zoom - initial magnification of image

extents - initial display dimensions of the image

logMagDisplay - display log magnitude of image

_orientation - orientation of the image

isReference - DOCUMENT ME!

Method Details

getCenterPtLocation

public int getCenterPtLocation()

Gets the center point of rotation.

Returns:

int

getNumPoints

public int getNumPoints()

Finds the number of points in the active VOI contour.

Overrides:

getNumPoints in class ViewJComponentEditImage

Returns:

the number of points in the selected VOI

getPointVOI

public VOI getPointVOI()

All VOIPoints are stored in one VOI contained in this class. This function returns that VOI.

Returns:

VOI for the VOIPoints in this class.

setPointVOI

public void setPointVOI(VOI newVOI)

All VOIPoints are stored in one VOI contained in this class. This function sets that VOI used when the user copies VOIPoints from the reference to the adjustable image or vice versa.

Parameters:

newVOI - new set of VOIPoints.

getXCoords

public int[] getXCoords()

Returns an array containing the list of X coordinates for the VOIPoints.

Returns:

int[] list of x coordinates

getYCoords

public int[] getYCoords()

Returns an array containing the list of Y coordinates for the VOIPoints.

Returns:

int[] list of y coordinates

setRotate

public void setRotate(TransMatrix kMat)

Sets the TransMatrix for the set of VOIPoints contained in this class.

Parameters:

kMat - new TransMatrix

isReference

public boolean isReference()

Returns true if this is the reference image.

Returns:

true if this is the reference image.

resetAdjustableVOIs

public void resetAdjustableVOIs(double[][] pointSetA,
 double[][] pointSetB)

Resets all of the VOIPoint's by moving them from pointSet A to point set B.

Parameters:

pointSetA - current VOIPoints locations

pointSetB - locations to where the VOIPoints should be moved

setCenterPtLocation

public void setCenterPtLocation(int centerPtLoc)

Sets the center point of rotation to this location.

Parameters:

centerPtLoc - int