Package gov.nih.mipav.view

Class ViewJFrameRegistration

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

gov.nih.mipav.view.ViewJFrameBase

gov.nih.mipav.view.ViewJFrameRegistration

All Implemented Interfaces:

VOIManagerInterfaceListener, ViewImageUpdateInterface, ActionListener, ComponentListener, FocusListener, ItemListener, MouseListener, MouseMotionListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants

public class ViewJFrameRegistration
extends ViewJFrameBase
implements ItemListener, ChangeListener, FocusListener, MouseMotionListener, MouseListener, VOIManagerInterfaceListener

ViewJFrameRegistration is called in ViewJFrameImage. ViewJFrameRegistration calls ViewJComponentRegistration.

In ordinary image dragging you simply drag one image. Here the adjustable slice is moved while the reference slice stays fixed, and a bilinear transformation followed by an alpha blending of the 2 images occurs. Because g.drawImage in ViewJComponentBase draws the blended image, the movement cannot simply be performed by changing the parameters of g.drawImage.

The adjustable image slice moves are determined by floating point values fed into a transform routine that performs bilinear interpolation.

The file menu has 1 item, Close registration. A reference slice slider selects the slice which does not move and against which the other slices are adjusted. An adjusted slice slider selects a slice which will be moved into a desired alignment with the reference slice. An alpha blending slider determines the percentages of the image produced by the reference slice(image R) and the adjusted slice(imageA). 24 toolbar buttons are present:

1.) Display LUT table calls forth a display panel which allows the user to set separate histograms for the reference and adjusted slices.
2.) Create checkerboard pattern
3.) Magnify image 2.0X.
4.) Magnify image 0.5X.
5.) Window region of imageB
6.) Apply least squares alignment.
7.) Apply thin plate spline alignment.
8.) Reset to return slice to original state and remove all markers
9.) Commit the slice to the image.
10.) Set the pixel increment for image translations and movements of the rotation center. Values can range from 0.01 to 2048.0. Movements of the rotation center will only be performed to the nearest integer. The default value is 1.0 pixels.
11.) Put in translate mode. In this mode the image can either be moved with the up, down, right, and left buttons or moved a distance and direction with mouse dragging. 12.) up button for image translation in translate mode and rotation center and marker movements in POINT_VOI mode.
13.) down button for image translation in translate mode and rotation center and marker movements in POINT_VOI mode.
14.) right button for image translation in translate mode and rotation center and marker movements in POINT_VOI mode.
15.) left button for image translation in translate mode and rotation center and marker movements in POINT_VOI mode.
16.) Set degree increment for image rotations. Values can range from 0.01 to 360.0 degrees. The default value is 1.0 degrees.
17.) Put in rotate mode for rotating the image. In this mode the image can be moved either with the cw and ccw buttons or moved an angle around the rotation center point as given by mouse dragging. The initial rotation point is the center, but a new rotation point can be set with a mouse press.
18.) cw button for rotating an image clockwise in rotate mode.
19.) ccw button for rotating an image counterclockwise in rotate mode.
20.) Put in POINT_VOI mode for setting the location of reference slice markers. Red markers are used.
21.) Put in the POINT_VOI mode for setting the location of adjusted slice markers. Green markers are used. Green markers move with translations and rotations.
22.) Delete selected reference slice markers.
23.) Delete selected adjusted slice markers.
24.) Return to default mode.

Version:

1.0

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
private class	ViewJFrameRegistration.JDialogIncrement	Class for the two dialogs for incrementing - the pixel increment dialog and the degree increment dialog.

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field	Description
private int	adjMark	DOCUMENT ME!
static final int	ADJMARK	DOCUMENT ME!
private JToggleButton	adjMarkButton	DOCUMENT ME!
private JButton	adjMarkMinusButton	DOCUMENT ME!
private AlgorithmCostFunctions2D	algoCost
private JSlider	alphaSlider	DOCUMENT ME!
private int	bufferFactor	DOCUMENT ME!
private int	bufferSize	DOCUMENT ME!
private JButton[]	buttonArray	DOCUMENT ME!
private JButton	calculateCostButton
private JButton	ccwButton	DOCUMENT ME!
private ViewJComponentRegistration	componentImage	DOCUMENT ME!
private int	componentY	DOCUMENT ME!
private JPanel	controlPanel	DOCUMENT ME!
private ViewControlsImage	controls	DOCUMENT ME!
private JScrollPane	costFunctionScrollPane	Scroll Pane for the Text Area
private JTextArea	costFunctionTextArea
private GridBagConstraints	cpGBC	DOCUMENT ME!
private GridBagLayout	cpGBL	DOCUMENT ME!
private int	curAdjMark	DOCUMENT ME!
private int	curRefMark	DOCUMENT ME!
private JButton	cwButton	DOCUMENT ME!
private JToggleButton	defaultModeButton	DOCUMENT ME!
private float	degreeIncrement	DOCUMENT ME!
private JButton	degreeIncrementButton	DOCUMENT ME!
private boolean	doDrag	DOCUMENT ME!
private boolean	doneLeastSquares	DOCUMENT ME!
private boolean	doRegionB	DOCUMENT ME!
private JButton	downButton	DOCUMENT ME!
private JToggleButton	dragButton	DOCUMENT ME!
private Border	etchedBorder	DOCUMENT ME!
private int[]	extents	DOCUMENT ME!
private JMenu	fileMenu	DOCUMENT ME!
private Font	font12	DOCUMENT ME!
private GridBagConstraints	gbc	DOCUMENT ME!
private boolean	haveVOIPoints	DOCUMENT ME!
private JMenu	helpMenu	DOCUMENT ME!
private int	i	DOCUMENT ME!
private ModelImage	image	DOCUMENT ME!
private float[]	imageBufferA	DOCUMENT ME!
private float[]	imageBufferB	DOCUMENT ME!
private float[]	imageBufferOriginalB	DOCUMENT ME!
private int	imageSize	DOCUMENT ME!
private JMenuItem	itemClose	DOCUMENT ME!
private JMenuItem	itemHelp	DOCUMENT ME!
private int	j	DOCUMENT ME!
private JLabel	labelAdjustedSlice	DOCUMENT ME!
private JLabel	labelReferenceSlice	DOCUMENT ME!
private Hashtable<Integer,JLabel>	labelTable	DOCUMENT ME!
private Hashtable<Integer,JLabel>	labelTable2	DOCUMENT ME!
private JButton	leftButton	DOCUMENT ME!
private boolean	logMagDisplay	DOCUMENT ME!
private int[]	markerType	DOCUMENT ME!
private int	minimumToolBarWidth	DOCUMENT ME!
private int	mode	DOCUMENT ME!
private ButtonGroup	movementGroup	DOCUMENT ME!
private int	n	DOCUMENT ME!
private int	newAlphaBlend	DOCUMENT ME!
private int[]	newExtents	DOCUMENT ME!
private int	nImage	DOCUMENT ME!
private int	nVOI	DOCUMENT ME!
private JMenuBar	openingMenuBar	DOCUMENT ME!
private int[]	pixBuffer	DOCUMENT ME!
private int[]	pixBufferB	DOCUMENT ME!
private float	pixelIncrement	DOCUMENT ME!
private JButton	pixelIncrementButton	DOCUMENT ME!
private double[][]	pointSetA	DOCUMENT ME!
private double[][]	pointSetB	DOCUMENT ME!
private int	refMark	DOCUMENT ME!
static final int	REFMARK	DOCUMENT ME!
private JToggleButton	refMarkButton	DOCUMENT ME!
private JButton	refMarkMinusButton	DOCUMENT ME!
private JButton	rightButton	DOCUMENT ME!
private JToggleButton	rotateButton	DOCUMENT ME!
static final int	ROTATIONCENTER	The 3 types of markers - rotation center, reference slice, and adjusted slice.
private JScrollPane	scrollPane	DOCUMENT ME!
private int	scrollPaneSize	DOCUMENT ME!
private ModelImage	secondImage	DOCUMENT ME!
private static final long	serialVersionUID	Use serialVersionUID for interoperability.
protected Font	serif12	DOCUMENT ME!
private ModelSimpleImage	simpleImg1	Holds extents, other info about firstImage and SecondImage
private ModelSimpleImage	simpleImg2	Holds extents, other info about firstImage and SecondImage
private JSlider	slider	DOCUMENT ME!
private JSlider	slider2	DOCUMENT ME!
private JTextField	textAdjustedSlice	DOCUMENT ME!
private JTextField	textReferenceSlice	DOCUMENT ME!
private TransMatrix	tMatrix	Identity matrix for testing cost
JToggleButton[]	toggleArray	DOCUMENT ME!
private JToolBar	toolBar	DOCUMENT ME!
private JToolBar	toolBar2	DOCUMENT ME!
private JPanel	topPanel	DOCUMENT ME!
private JToggleButton	translateButton	DOCUMENT ME!
private JButton	upButton	DOCUMENT ME!
private VOI	voi	DOCUMENT ME!
private VOIManagerInterface	voiManager
private Vector<WildMagic.LibFoundation.Mathematics.Vector3f>	VOIPoints	DOCUMENT ME!
private int	xDim	DOCUMENT ME!
private TransMatrix	xfrm	DOCUMENT ME!
private TransMatrix	xfrmBA	DOCUMENT ME!
private TransMatrix	xfrmD	DOCUMENT ME!
private TransMatrix	xfrmH	DOCUMENT ME!
private int[]	xOrg	DOCUMENT ME!
private int[]	xPres	DOCUMENT ME!
private float	xRes	DOCUMENT ME!
private float	xRotation	DOCUMENT ME!
private int	xScreen	DOCUMENT ME!
private int	yDim	DOCUMENT ME!
private int[]	yOrg	DOCUMENT ME!
private int[]	yPres	DOCUMENT ME!
private float	yRes	DOCUMENT ME!
private float	yRotation	DOCUMENT ME!
private int	yScreen	DOCUMENT ME!
private int	zLastSlice	DOCUMENT ME!
private int	zLastSlice2	DOCUMENT ME!
private float	zoom	DOCUMENT ME!
private int	zSlice	DOCUMENT ME!
private int	zSlice2	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.view.ViewJFrameBase

absoluteGoToButton, absoluteGoToPanel, absoluteLabel, absoluteLabelVals, absolutePanel, absoluteXLabel, absoluteXTextField, absoluteYLabel, absoluteYTextField, absoluteZLabel, absoluteZTextField, alphaBlend, defaultLUTa, defaultLUTb, displayMode, IMAGE_A, IMAGE_A_B, IMAGE_B, imageA, imageB, isClosing, linkedScrolling, linkFrame, linkTriFrame, LUTa, LUTb, progressBar, scannerLPS_APLabel, scannerLPS_APTextField, scannerLPS_GoToButton, scannerLPS_GoToPanel, scannerLPS_ISLabel, scannerLPS_ISTextField, scannerLPS_RLLabel, scannerLPS_RLTextField, scannerLPSLabel, scannerLPSLabelVals, scannerLPSPanel, scannerRAS_APLabel, scannerRAS_APTextField, scannerRAS_GoToButton, scannerRAS_GoToPanel, scannerRAS_ISLabel, scannerRAS_ISTextField, scannerRAS_RLLabel, scannerRAS_RLTextField, scannerRASLabel, scannerRASLabelVals, scannerRASPanel, scannerTabbedPane, tabbedPane, talGoToButton, talGoToPanel, talXLabel, talXTextField, talYLabel, talYTextField, talZLabel, talZTextField, userInterface, zoomMode

Fields inherited from class javax.swing.JFrame

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Constructor Summary

Constructors

Constructor	Description
ViewJFrameRegistration(ModelImage _image, ModelImage _image2, ModelLUT _LUT, ModelLUT _LUT2)	Makes a frame of the manually registered image.
ViewJFrameRegistration(ModelImage _image, ModelLUT _LUT)	Makes a frame of the manually registered image.

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent event)	Calls various methods depending on the action.
private void	addControlPanel(Component c, GridBagConstraints gbc, int x, int y, int w, int h)	Adds a component to the control panel.
void	addSphereVOIs(VOI annotations)
private void	addTopPanel(Component c, GridBagConstraints gbc, int x, int y, int w, int h)	Adds a component to the top panel.
private void	buildControlPanel(boolean isOne)	panel that sets the at rest frame number and the desired frames per second.
private void	buildMenu()	this method builds a menu which contains the options Save image as and Close Registration.
private JToolBar	buildRegistrationToolBar(ActionListener al)	builds the first registration toolbar.
private void	buildScrollPane()	Make a scroll frame and puts an image component into it.
private JToolBar	buildToolBar2(ActionListener al)	builds the second registration toolbar.
TransMatrix	buildXfrm(double[] p1, double[] p2, Jama.Matrix R)	Builds 4x4 transformation matrix from R and T T=p2-R*p1.
private void	calculateCostFunctionValues()
void	calculateResiduals()	Calculates the residuals of the least squares fit.
void	close()	Disposes of components and frame.
void	componentResized(ComponentEvent event)	Resizes frame and all components.
void	create3DVOI(boolean bIntersection)
private JLabel	createLabel(String title)	Helper method to create a label with the proper font and font color.
double	euclideanDistance(double[] ptA, double[] ptB)	Calculates the Euclidean distance.
void	finalize()	DOCUMENT ME!
void	focusGained(FocusEvent event)	Currently unused.
void	focusLost(FocusEvent event)	Currently unused.
ModelImage	getActiveImage()
ModelLUT	getActiveLUT()
ModelRGB	getActiveRGB()
WildMagic.LibFoundation.Mathematics.Vector3f	getCenterPt()
ViewControlsImage	getControls()	Gets control widgets for frame.
JFrame	getFrame()
ModelImage	getImageA()	Returns the reference to imageA.
ModelImage	getImageB()	Returns the reference to imageB.
VOIManagerInterface	getVOIManager()
private void	init(boolean isOne)	DOCUMENT ME!
private void	initVOI()
void	itemStateChanged(ItemEvent event)	sets the flags for the checkboxes.
private boolean	leastSquares()	This code comes from matchBtoA() and buildXfrm(double p1[],double p2[], Matrix R) in AlgorithmRegLeastSquares.
private JButton	makeSeparator()	makes a separator for the use in the toolbars.
void	maskToPaint()
void	mouseClicked(MouseEvent mouseEvent)	unchanged.
void	mouseDragged(MouseEvent mouseEvent)	continually updates the image depending on where the mouse is - unchanged.
void	mouseEntered(MouseEvent mouseEvent)	unchanged.
void	mouseExited(MouseEvent mouseEvent)	unchanged.
void	mouseMoved(MouseEvent mouseEvent)	Changes the LUT text field display based on the Y value of the mouse when inside ViewJComponentLUT - unchanged.
void	mousePressed(MouseEvent mouseEvent)	unchanged.
void	mouseReleased(MouseEvent mouseEvent)	unchanged.
void	paintToShortMask()
void	paintToUbyteMask()
void	PointerActive(boolean bActive)
WildMagic.LibFoundation.Mathematics.Vector3f	PropDown(int iActive)
WildMagic.LibFoundation.Mathematics.Vector3f	PropUp(int iActive)
void	removeControls()	Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls.
void	setActiveImage(int active)	Sets the active image for drawing VOIs.
void	setActiveImage(ModelImage kImage)
void	setAlphaBlend(int value)	Sets the alpha blending of parameter for two image displaying.
void	setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)
void	setControls()	Sets the menu and controls (i.e. toolbars) of the main frame!
void	setDefaultMode()	setDefaultMode.
void	setEnabled(boolean flag)	Controls whether or not the images/VOIs of the frame can be modified.
void	setImageB(ModelImage _imageB)	Sets the reference to imageB.
void	setLUTa(ModelLUT LUT)	Sets the model LUT for the imageA.
void	setLUTb(ModelLUT LUT)	setLUTb - accessor that sets the model LUTb for the imageB.
void	setMode(int mode)	sets mode.
void	setModified()
void	setMove(float xStart, float yStart, float xFinish, float yFinish)	If doDrag == false, this routine processes movements generated by mouse presses and releases.
void	setPaintBitmapSwitch(boolean paintBitmapSwitch)	When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image.
void	setPaintMask(BitSet mask)
void	setRGBTA(ModelRGB RGBT)	Sets the RGB LUT table for ARGB image A.
void	setRGBTB(ModelRGB RGBT)	Sets the RGB LUT table for ARGB image B.
void	setRotationCenter(float xRot, float yRot)	Sets the coordinates of the point the will be the new image rotation center.
void	setSlice(int slice)	Sets the slice to be displayed and updates title frame.
void	setTimeSlice(int slice)	Sets the slice to be displayed and updates title frame.
void	setTitle()	sets the title of the frame with the image name and magnification.
static final double	SQR(double x)	SQR = x^2.
void	stateChanged(ChangeEvent e)	sets values based on knob along slider.
private void	tpSpline()	Thin-plate registration method.
private void	transform()	Transforms the image.
private void	transformC()	Transforms color image.
void	updateData()
void	updateFrame(float sX, float sY)	DOCUMENT ME!
boolean	updateImageExtents()	This methods calls the componentImage's REPAINT method to redraw the screen.
final boolean	updateImages()	This methods calls the componentImage's update method to redraw the screen.
final boolean	updateImages(boolean forceShow)	Calls the componentImage's update method to redraw the screen.
final boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow)	This methods calls the componentImage's update method to redraw the screen.
final boolean	updateImages(ModelLUT LUTa, ModelLUT LUTb, boolean forceShow, int interpMode)	This methods calls the componentImage's update method to redraw the screen.
void	windowActivated(WindowEvent event)	unchanged.
void	windowClosed(WindowEvent event)	unchanged.
void	windowClosing(WindowEvent event)	Calls dispose.
void	windowDeactivated(WindowEvent event)	unchanged.
void	windowDeiconified(WindowEvent event)	unchanged.
void	windowIconified(WindowEvent event)	unchanged.
void	windowOpened(WindowEvent event)	Unchanged.

Methods inherited from class gov.nih.mipav.view.ViewJFrameBase

about, buildLabelPanel, canCloseImageBAfterLoad, close, closeImageB, componentHidden, componentMoved, componentShown, getAlphaBlend, getDefaultLUTa, getDefaultLUTb, getDisplayMode, getImageNameA, getImageNameB, getLastState, getLUTa, getLUTb, getRGBTA, getRGBTB, getTriImg, getUserInterface, handleMaskPopupMenu, handlePaintToMaskPopupMenu, handleZoomPopupMenu, initExtents, initImageBuffer, initLUT, initNumSlices, initPixelBuffer, initResFactor, initResolutions, initRGB, initSlicePositions, initUnits, initZoom, loadAllVOIs, loadAllVOIsFrom, loadImage, loadLUT, loadLUTandTransferFunctionFrom, loadLUTandTransferFunctionFrom, makeString, newFrameBeenCreated, openVOI, openVOI, pickImageFile, save, save, save, saveAllVOIs, saveAllVOIsTo, saveLabels, saveLUT, saveLUTandTransferFunction, saveLUTandTransferFunction, saveLUTAs, saveLUTAs, saveVOI, saveVOIAs, saveVOIAs, saveVOIIntensities, saveVOIIntensitiesTo, setAbsPositionLabels, setEnableCloseImageBAfterLoad, setImageA, setLastState, setLinkedFrame, setLinkedTriFrame, setLUTs, setMessageText, setOpacityInfo, setpaintBitmap, setScannerPosition

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Methods inherited from interface gov.nih.mipav.view.renderer.WildMagic.VOI.VOIManagerInterfaceListener

setCursor

Field Details

serialVersionUID

private static final long serialVersionUID

Use serialVersionUID for interoperability.

See Also:

• Constant Field Values

ROTATIONCENTER

public static final int ROTATIONCENTER

The 3 types of markers - rotation center, reference slice, and adjusted slice.

See Also:

• Constant Field Values

REFMARK

public static final int REFMARK

DOCUMENT ME!

See Also:

• Constant Field Values

ADJMARK

public static final int ADJMARK

DOCUMENT ME!

See Also:

• Constant Field Values

toggleArray

public JToggleButton[] toggleArray

DOCUMENT ME!

serif12

protected Font serif12

DOCUMENT ME!

adjMark

private int adjMark

DOCUMENT ME!

adjMarkButton

private JToggleButton adjMarkButton

DOCUMENT ME!

adjMarkMinusButton

private JButton adjMarkMinusButton

DOCUMENT ME!

alphaSlider

private JSlider alphaSlider

DOCUMENT ME!

bufferFactor

private int bufferFactor

DOCUMENT ME!

bufferSize

private int bufferSize

DOCUMENT ME!

buttonArray

private JButton[] buttonArray

DOCUMENT ME!

ccwButton

private JButton ccwButton

DOCUMENT ME!

componentImage

private ViewJComponentRegistration componentImage

DOCUMENT ME!

componentY

private int componentY

DOCUMENT ME!

controlPanel

private JPanel controlPanel

DOCUMENT ME!

controls

private ViewControlsImage controls

DOCUMENT ME!

cpGBC

private GridBagConstraints cpGBC

DOCUMENT ME!

cpGBL

private GridBagLayout cpGBL

DOCUMENT ME!

curAdjMark

private int curAdjMark

DOCUMENT ME!

curRefMark

private int curRefMark

DOCUMENT ME!

cwButton

private JButton cwButton

DOCUMENT ME!

defaultModeButton

private JToggleButton defaultModeButton

DOCUMENT ME!

degreeIncrement

private float degreeIncrement

DOCUMENT ME!

degreeIncrementButton

private JButton degreeIncrementButton

DOCUMENT ME!

doDrag

private boolean doDrag

DOCUMENT ME!

doneLeastSquares

private boolean doneLeastSquares

DOCUMENT ME!

doRegionB

private boolean doRegionB

DOCUMENT ME!

downButton

private JButton downButton

DOCUMENT ME!

dragButton

private JToggleButton dragButton

DOCUMENT ME!

etchedBorder

private Border etchedBorder

DOCUMENT ME!

extents

private int[] extents

DOCUMENT ME!

fileMenu

private JMenu fileMenu

DOCUMENT ME!

font12

private Font font12

DOCUMENT ME!

gbc

private GridBagConstraints gbc

DOCUMENT ME!

haveVOIPoints

private boolean haveVOIPoints

DOCUMENT ME!

helpMenu

private JMenu helpMenu

DOCUMENT ME!

i

private int i

DOCUMENT ME!

j

private int j

DOCUMENT ME!

image

private ModelImage image

DOCUMENT ME!

imageBufferA

private float[] imageBufferA

DOCUMENT ME!

imageBufferB

private float[] imageBufferB

DOCUMENT ME!

imageBufferOriginalB

private float[] imageBufferOriginalB

DOCUMENT ME!

imageSize

private int imageSize

DOCUMENT ME!

itemClose

private JMenuItem itemClose

DOCUMENT ME!

itemHelp

private JMenuItem itemHelp

DOCUMENT ME!

labelReferenceSlice

private JLabel labelReferenceSlice

DOCUMENT ME!

labelAdjustedSlice

private JLabel labelAdjustedSlice

DOCUMENT ME!

labelTable

private Hashtable<Integer,JLabel> labelTable

DOCUMENT ME!

labelTable2

private Hashtable<Integer,JLabel> labelTable2

DOCUMENT ME!

leftButton

private JButton leftButton

DOCUMENT ME!

logMagDisplay

private boolean logMagDisplay

DOCUMENT ME!

markerType

private int[] markerType

DOCUMENT ME!

minimumToolBarWidth

private int minimumToolBarWidth

DOCUMENT ME!

mode

private int mode

DOCUMENT ME!

movementGroup

private ButtonGroup movementGroup

DOCUMENT ME!

n

private int n

DOCUMENT ME!

newAlphaBlend

private int newAlphaBlend

DOCUMENT ME!

newExtents

private int[] newExtents

DOCUMENT ME!

nImage

private int nImage

DOCUMENT ME!

nVOI

private int nVOI

DOCUMENT ME!

openingMenuBar

private JMenuBar openingMenuBar

DOCUMENT ME!

pixBuffer

private int[] pixBuffer

DOCUMENT ME!

pixBufferB

private int[] pixBufferB

DOCUMENT ME!

pixelIncrement

private float pixelIncrement

DOCUMENT ME!

pixelIncrementButton

private JButton pixelIncrementButton

DOCUMENT ME!

pointSetA

private double[][] pointSetA

DOCUMENT ME!

pointSetB

private double[][] pointSetB

DOCUMENT ME!

refMark

private int refMark

DOCUMENT ME!

refMarkButton

private JToggleButton refMarkButton

DOCUMENT ME!

refMarkMinusButton

private JButton refMarkMinusButton

DOCUMENT ME!

rightButton

private JButton rightButton

DOCUMENT ME!

rotateButton

private JToggleButton rotateButton

DOCUMENT ME!

scrollPane

private JScrollPane scrollPane

DOCUMENT ME!

scrollPaneSize

private int scrollPaneSize

DOCUMENT ME!

secondImage

private ModelImage secondImage

DOCUMENT ME!

slider

private JSlider slider

DOCUMENT ME!

slider2

private JSlider slider2

DOCUMENT ME!

textReferenceSlice

private JTextField textReferenceSlice

DOCUMENT ME!

textAdjustedSlice

private JTextField textAdjustedSlice

DOCUMENT ME!

toolBar

private JToolBar toolBar

DOCUMENT ME!

toolBar2

private JToolBar toolBar2

DOCUMENT ME!

topPanel

private JPanel topPanel

DOCUMENT ME!

translateButton

private JToggleButton translateButton

DOCUMENT ME!

calculateCostButton

private JButton calculateCostButton

upButton

private JButton upButton

DOCUMENT ME!

voi

private VOI voi

DOCUMENT ME!

VOIPoints

private Vector<WildMagic.LibFoundation.Mathematics.Vector3f> VOIPoints

DOCUMENT ME!

xDim

private int xDim

DOCUMENT ME!

xfrm

private TransMatrix xfrm

DOCUMENT ME!

xfrmBA

private TransMatrix xfrmBA

DOCUMENT ME!

xfrmD

private TransMatrix xfrmD

DOCUMENT ME!

xfrmH

private TransMatrix xfrmH

DOCUMENT ME!

xOrg

private int[] xOrg

DOCUMENT ME!

xPres

private int[] xPres

DOCUMENT ME!

xRes

private float xRes

DOCUMENT ME!

xRotation

private float xRotation

DOCUMENT ME!

xScreen

private int xScreen

DOCUMENT ME!

yScreen

private int yScreen

DOCUMENT ME!

yDim

private int yDim

DOCUMENT ME!

yOrg

private int[] yOrg

DOCUMENT ME!

yPres

private int[] yPres

DOCUMENT ME!

yRes

private float yRes

DOCUMENT ME!

yRotation

private float yRotation

DOCUMENT ME!

zoom

private float zoom

DOCUMENT ME!

zSlice

private int zSlice

DOCUMENT ME!

zSlice2

private int zSlice2

DOCUMENT ME!

zLastSlice

private int zLastSlice

DOCUMENT ME!

zLastSlice2

private int zLastSlice2

DOCUMENT ME!

costFunctionTextArea

private JTextArea costFunctionTextArea

costFunctionScrollPane

private JScrollPane costFunctionScrollPane

Scroll Pane for the Text Area

simpleImg1

private ModelSimpleImage simpleImg1

Holds extents, other info about firstImage and SecondImage

simpleImg2

private ModelSimpleImage simpleImg2

Holds extents, other info about firstImage and SecondImage

tMatrix

private TransMatrix tMatrix

Identity matrix for testing cost

algoCost

private AlgorithmCostFunctions2D algoCost

voiManager

private VOIManagerInterface voiManager

Constructor Details

ViewJFrameRegistration

public ViewJFrameRegistration(ModelImage _image,
 ModelLUT _LUT)

Makes a frame of the manually registered image.

Parameters:

_image - Model of image

_LUT - Model of LUT for image

ViewJFrameRegistration

public ViewJFrameRegistration(ModelImage _image,
 ModelImage _image2,
 ModelLUT _LUT,
 ModelLUT _LUT2)

Makes a frame of the manually registered image.

Parameters:

_image - the first image

_image2 - the second image

_LUT - lut for the first image

_LUT2 - lut for the second image

Method Details

SQR

public static final double SQR(double x)

SQR = x^2.

Parameters:

x - DOCUMENT ME!

Returns:

DOCUMENT ME!

actionPerformed

public void actionPerformed(ActionEvent event)

Calls various methods depending on the action.

Specified by:

actionPerformed in interface ActionListener

Specified by:

actionPerformed in class ViewJFrameBase

Parameters:

event - event that triggered function

buildXfrm

public TransMatrix buildXfrm(double[] p1,
 double[] p2,
 Jama.Matrix R)

Builds 4x4 transformation matrix from R and T T=p2-R*p1.

Parameters:

p1 - from Match

p2 - from Match

R - matrix from Match

Returns:

transformation matrix

calculateResiduals

public void calculateResiduals()

Calculates the residuals of the least squares fit.

close

public void close()

Disposes of components and frame.

Overrides:

close in class ViewJFrameBase

componentResized

public void componentResized(ComponentEvent event)

Resizes frame and all components.

Specified by:

componentResized in interface ComponentListener

Overrides:

componentResized in class ViewJFrameBase

Parameters:

event - event that triggered function

euclideanDistance

public double euclideanDistance(double[] ptA,
 double[] ptB)

Calculates the Euclidean distance.

Parameters:

ptA - point A

ptB - point B

Returns:

the euclidean distance between points

finalize

public void finalize()

DOCUMENT ME!

Overrides:

finalize in class ViewJFrameBase

focusGained

public void focusGained(FocusEvent event)

Currently unused.

Specified by:

focusGained in interface FocusListener

Parameters:

event - DOCUMENT ME!

focusLost

public void focusLost(FocusEvent event)

Currently unused.

Specified by:

focusLost in interface FocusListener

Parameters:

event - DOCUMENT ME!

getControls

public ViewControlsImage getControls()

Gets control widgets for frame.

Specified by:

getControls in class ViewJFrameBase

Returns:

controls

getImageA

public ModelImage getImageA()

Returns the reference to imageA.

Specified by:

getImageA in class ViewJFrameBase

Returns:

image

getImageB

public ModelImage getImageB()

Returns the reference to imageB.

Specified by:

getImageB in class ViewJFrameBase

Returns:

imageB

itemStateChanged

public void itemStateChanged(ItemEvent event)

sets the flags for the checkboxes.

Specified by:

itemStateChanged in interface ItemListener

Parameters:

event - event that triggered this function

mouseClicked

public void mouseClicked(MouseEvent mouseEvent)

unchanged.

Specified by:

mouseClicked in interface MouseListener

Parameters:

mouseEvent - event that triggered function

mouseDragged

public void mouseDragged(MouseEvent mouseEvent)

continually updates the image depending on where the mouse is - unchanged.

Specified by:

mouseDragged in interface MouseMotionListener

Parameters:

mouseEvent - event that triggered this function

mouseEntered

public void mouseEntered(MouseEvent mouseEvent)

unchanged.

Specified by:

mouseEntered in interface MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mouseExited

public void mouseExited(MouseEvent mouseEvent)

unchanged.

Specified by:

mouseExited in interface MouseListener

Parameters:

mouseEvent - DOCUMENT ME!

mouseMoved

public void mouseMoved(MouseEvent mouseEvent)

Changes the LUT text field display based on the Y value of the mouse when inside ViewJComponentLUT - unchanged.

Specified by:

mouseMoved in interface MouseMotionListener

Parameters:

mouseEvent - event that triggered this function

mousePressed

public void mousePressed(MouseEvent mouseEvent)

unchanged.

Specified by:

mousePressed in interface MouseListener

Parameters:

mouseEvent - event that triggered function

mouseReleased

public void mouseReleased(MouseEvent mouseEvent)

unchanged.

Specified by:

mouseReleased in interface MouseListener

Parameters:

mouseEvent - event that triggered function

removeControls

public void removeControls()

Removes the menu and controls of the main frame so that a new frame can load the main frame with the proper controls. Currently unused.

Specified by:

removeControls in class ViewJFrameBase

setActiveImage

public void setActiveImage(int active)

Sets the active image for drawing VOIs. VOIs are only drawn in the active image. In addition, algorithms are executed on the active window.

Specified by:

setActiveImage in interface VOIManagerInterfaceListener

Specified by:

setActiveImage in class ViewJFrameBase

Parameters:

active - IMAGE_A or IMAGE_B

setAlphaBlend

public void setAlphaBlend(int value)

Sets the alpha blending of parameter for two image displaying. Currently unused.

Specified by:

setAlphaBlend in class ViewJFrameBase

Parameters:

value - amount [0,100] that is the percentage of Image A to be displayed

setControls

public void setControls()

Sets the menu and controls (i.e. toolbars) of the main frame! This puts the menus and controls needed to controls the operations of this frame. Different image frames have different menu and controls. Currently unused.

Specified by:

setControls in class ViewJFrameBase

setDefaultMode

public void setDefaultMode()

setDefaultMode.

setEnabled

public void setEnabled(boolean flag)

Controls whether or not the images/VOIs of the frame can be modified. Currently unused.

Specified by:

setEnabled in class ViewJFrameBase

Parameters:

flag - if true the image/VOIs can be modified; if false image/VOIs can NOT be modified

setImageB

public void setImageB(ModelImage _imageB)

Sets the reference to imageB. Currently unused.

Specified by:

setImageB in class ViewJFrameBase

Parameters:

_imageB - Image to set the frame to

setLUTa

public void setLUTa(ModelLUT LUT)

Sets the model LUT for the imageA.

Overrides:

setLUTa in class ViewJFrameBase

Parameters:

LUT - the model LUT

setLUTb

public void setLUTb(ModelLUT LUT)

setLUTb - accessor that sets the model LUTb for the imageB.

Overrides:

setLUTb in class ViewJFrameBase

Parameters:

LUT - the model LUT

setMode

public void setMode(int mode)

sets mode.

Parameters:

mode - DOCUMENT ME!

setMove

public void setMove(float xStart,
 float yStart,
 float xFinish,
 float yFinish)

If doDrag == false, this routine processes movements generated by mouse presses and releases. The mouse press location sets (xStart,yStart) and the mouse release location sets (xFinish,yFinish). If doDrag == true, this routine processes movements generated by mouse press and drag events.

Parameters:

xStart - DOCUMENT ME!

yStart - DOCUMENT ME!

xFinish - DOCUMENT ME!

yFinish - DOCUMENT ME!

setPaintBitmapSwitch

public void setPaintBitmapSwitch(boolean paintBitmapSwitch)

When switching the active image, take the paintBitmap of the previous active image as the paintBitmap of the new active image.

Specified by:

setPaintBitmapSwitch in class ViewJFrameBase

Parameters:

paintBitmapSwitch - if true don't copy the new acitve image mask

setRGBTA

public void setRGBTA(ModelRGB RGBT)

Sets the RGB LUT table for ARGB image A.

Specified by:

setRGBTA in class ViewJFrameBase

Parameters:

RGBT - the new RGB LUT to be applied to the image

setRGBTB

public void setRGBTB(ModelRGB RGBT)

Sets the RGB LUT table for ARGB image B.

Specified by:

setRGBTB in class ViewJFrameBase

Parameters:

RGBT - the new RGB LUT to be applied to the image

setRotationCenter

public void setRotationCenter(float xRot,
 float yRot)

Sets the coordinates of the point the will be the new image rotation center.

Parameters:

xRot - DOCUMENT ME!

yRot - DOCUMENT ME!

setSlice

public void setSlice(int slice)

Sets the slice to be displayed and updates title frame.

Specified by:

setSlice in interface ViewImageUpdateInterface

Parameters:

slice - indicates image slice to be displayed

setTimeSlice

public void setTimeSlice(int slice)

Sets the slice to be displayed and updates title frame. Currently unused.

Specified by:

setTimeSlice in interface ViewImageUpdateInterface

Parameters:

slice - indicates image time-slice (4th dimension) to be displayed

setTitle

public void setTitle()

sets the title of the frame with the image name and magnification.

Specified by:

setTitle in class ViewJFrameBase

stateChanged

public void stateChanged(ChangeEvent e)

sets values based on knob along slider.

Specified by:

stateChanged in interface ChangeListener

Overrides:

stateChanged in class ViewJFrameBase

Parameters:

e - event that triggered this function

updateFrame

public void updateFrame(float sX,
 float sY)

DOCUMENT ME!

Parameters:

sX - zoom in the x dimension

sY - zoom in the y dimension

updateImageExtents

public boolean updateImageExtents()

This methods calls the componentImage's REPAINT method to redraw the screen. The extents on this image have changed, so the extents need to be read in again and menus, panes and slide bars adjusted accordingly.

Specified by:

updateImageExtents in interface ViewImageUpdateInterface

Specified by:

updateImageExtents in class ViewJFrameBase

Returns:

DOCUMENT ME!

See Also:

• ViewImageUpdateInterface

updateImages

public final boolean updateImages()

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Returns:

boolean confirming successful update

updateImages

public final boolean updateImages(boolean forceShow)

Calls the componentImage's update method to redraw the screen. Without LUT changes.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

forceShow - forces show to re import image and calc. java image

Returns:

boolean confirming successful update

updateImages

public final boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean forceShow)

This methods calls the componentImage's update method to redraw the screen.

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

forceShow - forces show to re import image and calc. java image

Returns:

boolean confirming successful update

updateImages

public final boolean updateImages(ModelLUT LUTa,
 ModelLUT LUTb,
 boolean forceShow,
 int interpMode)

This methods calls the componentImage's update method to redraw the screen.

Specified by:

updateImages in interface ViewImageUpdateInterface

Parameters:

LUTa - LUT used to update imageA

LUTb - LUT used to update imageB

forceShow - forces show to re import image and calc. java image

interpMode - image interpolation method (Nearest or Smooth)

Returns:

boolean confirming successful update

windowActivated

public void windowActivated(WindowEvent event)

unchanged.

Specified by:

windowActivated in interface WindowListener

Overrides:

windowActivated in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

windowClosed

public void windowClosed(WindowEvent event)

unchanged.

Specified by:

windowClosed in interface WindowListener

Overrides:

windowClosed in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

windowClosing

public void windowClosing(WindowEvent event)

Calls dispose.

Specified by:

windowClosing in interface WindowListener

Overrides:

windowClosing in class ViewJFrameBase

Parameters:

event - event that triggered function

windowDeactivated

public void windowDeactivated(WindowEvent event)

unchanged.

Specified by:

windowDeactivated in interface WindowListener

Overrides:

windowDeactivated in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

windowDeiconified

public void windowDeiconified(WindowEvent event)

unchanged.

Specified by:

windowDeiconified in interface WindowListener

Overrides:

windowDeiconified in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

windowIconified

public void windowIconified(WindowEvent event)

unchanged.

Specified by:

windowIconified in interface WindowListener

Overrides:

windowIconified in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

windowOpened

public void windowOpened(WindowEvent event)

Unchanged.

Specified by:

windowOpened in interface WindowListener

Overrides:

windowOpened in class ViewJFrameBase

Parameters:

event - DOCUMENT ME!

addControlPanel

private void addControlPanel(Component c,
 GridBagConstraints gbc,
 int x,
 int y,
 int w,
 int h)

Adds a component to the control panel.

Parameters:

c - component

gbc - GridBagConstraints

x - DOCUMENT ME!

y - DOCUMENT ME!

w - DOCUMENT ME!

h - DOCUMENT ME!

addTopPanel

private void addTopPanel(Component c,
 GridBagConstraints gbc,
 int x,
 int y,
 int w,
 int h)

Adds a component to the top panel.

Parameters:

c - component

gbc - GridbagConstraints

x - DOCUMENT ME!

y - DOCUMENT ME!

w - DOCUMENT ME!

h - DOCUMENT ME!

buildControlPanel

private void buildControlPanel(boolean isOne)

panel that sets the at rest frame number and the desired frames per second.

Parameters:

isOne - one 3D (2.5) image, if false two 2D images are passed in and the top two sliders are not needed.

buildMenu

private void buildMenu()

this method builds a menu which contains the options Save image as and Close Registration.

buildRegistrationToolBar

private JToolBar buildRegistrationToolBar(ActionListener al)

builds the first registration toolbar.

Parameters:

al - ActionListener

Returns:

DOCUMENT ME!

buildScrollPane

private void buildScrollPane()

Make a scroll frame and puts an image component into it.

buildToolBar2

private JToolBar buildToolBar2(ActionListener al)

builds the second registration toolbar.

Parameters:

al - ActionListener

Returns:

DOCUMENT ME!

createLabel

private JLabel createLabel(String title)

Helper method to create a label with the proper font and font color.

Parameters:

title - Text of the label.

Returns:

New label.

init

private void init(boolean isOne)

DOCUMENT ME!

Parameters:

isOne - one 3D (2.5) image, if false two 2D images are passed in and the top two sliders are not needed.

leastSquares

private boolean leastSquares()

This code comes from matchBtoA() and buildXfrm(double p1[],double p2[], Matrix R) in AlgorithmRegLeastSquares.

Returns:

DOCUMENT ME!

makeSeparator

private JButton makeSeparator()

makes a separator for the use in the toolbars.

Returns:

DOCUMENT ME!

tpSpline

private void tpSpline()

Thin-plate registration method.

transform

private void transform()

Transforms the image.

transformC

private void transformC()

Transforms color image.

calculateCostFunctionValues

private void calculateCostFunctionValues()

PointerActive

public void PointerActive(boolean bActive)

Specified by:

PointerActive in interface VOIManagerInterfaceListener

PropDown

public WildMagic.LibFoundation.Mathematics.Vector3f PropDown(int iActive)

Specified by:

PropDown in interface VOIManagerInterfaceListener

PropUp

public WildMagic.LibFoundation.Mathematics.Vector3f PropUp(int iActive)

Specified by:

PropUp in interface VOIManagerInterfaceListener

create3DVOI

public void create3DVOI(boolean bIntersection)

Specified by:

create3DVOI in interface VOIManagerInterfaceListener

getActiveImage

public ModelImage getActiveImage()

Specified by:

getActiveImage in interface VOIManagerInterfaceListener

getActiveLUT

public ModelLUT getActiveLUT()

Specified by:

getActiveLUT in interface VOIManagerInterfaceListener

getActiveRGB

public ModelRGB getActiveRGB()

Specified by:

getActiveRGB in interface VOIManagerInterfaceListener

getCenterPt

public WildMagic.LibFoundation.Mathematics.Vector3f getCenterPt()

Specified by:

getCenterPt in interface VOIManagerInterfaceListener

getFrame

public JFrame getFrame()

Specified by:

getFrame in interface VOIManagerInterfaceListener

getVOIManager

public VOIManagerInterface getVOIManager()

Specified by:

getVOIManager in interface VOIManagerInterfaceListener

setActiveImage

public void setActiveImage(ModelImage kImage)

Specified by:

setActiveImage in interface VOIManagerInterfaceListener

setCenter

public void setCenter(WildMagic.LibFoundation.Mathematics.Vector3f kCenter)

Specified by:

setCenter in interface VOIManagerInterfaceListener

setModified

public void setModified()

Specified by:

setModified in interface VOIManagerInterfaceListener

updateData

public void updateData()

Specified by:

updateData in interface VOIManagerInterfaceListener

setPaintMask

public void setPaintMask(BitSet mask)

Specified by:

setPaintMask in interface VOIManagerInterfaceListener

paintToShortMask

public void paintToShortMask()

Specified by:

paintToShortMask in interface VOIManagerInterfaceListener

paintToUbyteMask

public void paintToUbyteMask()

Specified by:

paintToUbyteMask in interface VOIManagerInterfaceListener

maskToPaint

public void maskToPaint()

Specified by:

maskToPaint in interface VOIManagerInterfaceListener

initVOI

private void initVOI()

addSphereVOIs

public void addSphereVOIs(VOI annotations)

Specified by:

addSphereVOIs in interface VOIManagerInterfaceListener