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- Main Page (316,947 views)
- MIPAV Help (299,438 views)
- MIPAV change list (277,615 views)
- Image formats descriptions (198,160 views)
- DTI Pipeline (184,239 views)
- MIPAV feature list (135,682 views)
- Introducing MIPAV (127,183 views)
- Changing Image Contrast (125,413 views)
- Customizing MIPAV (123,703 views)
- Converting non-DICOM image files to DICOM format (118,772 views)
- Getting Started Quickly with MIPAV (115,200 views)
- Displaying images (114,771 views)
- Allocating Memory in MIPAV (114,083 views)
- Writing MIPAV plugins without MIPAV source code (113,930 views)
- Installing mipav (113,581 views)
- Prostate segmentation and surface reconstruction (112,111 views)
- Image submission plug-in (106,711 views)
- Supported Formats (106,206 views)
- B-Spline Automatic Registration (104,506 views)
- Publications (104,131 views)
- Creating new images (102,149 views)
- FAQ: Understanding Memory (101,945 views)
- Wiki help testing (100,451 views)
- Muscle Segmentation problems at UCSD (99,377 views)
- Sending and retrieving DICOM images (98,845 views)
- Cost functions used in MIPAV algorithms (98,430 views)
- MIPAV system requirements (97,911 views)
- Opening and loading image files (96,299 views)
- Morphology (93,402 views)
- Interpolation methods used in MIPAV (92,485 views)
- Transform (91,573 views)
- Swap slices and swap volumes (90,949 views)
- Transform: Conformal Mapping Algorithms (89,449 views)
- Hough Transform (88,432 views)
- Understanding Image Basics (88,408 views)
- FAQ: Understanding Image Basics (87,657 views)
- Registration: Manual 2D Series (87,294 views)
- Using MIPAV Algorithms (87,120 views)
- MIPAV toolbars (86,582 views)
- Delineating volumes of interest (VOIs) (85,138 views)
- Automatic de-Skulling (84,924 views)
- Map IDs (84,301 views)
- Displaying and editing DICOM tag information (83,731 views)
- Reviewing VOI statistics (82,837 views)
- Calculating VOI statistics (79,223 views)
- DTI pipeline interface (79,134 views)
- Optimized automatic registration 3D (75,745 views)
- Segmenting Images Using Contours and Masks: Using contours to segment a VOI (74,638 views)
- Fast Fourier Transformation (FFT) (74,254 views)
- DTI Color Display (74,145 views)
- Barrel Distortion Correction (73,714 views)
- Browsing DICOM images (73,712 views)
- Shading Correction: Inhomogeneity N3 Correction (70,750 views)
- Correcting image spacing (70,104 views)
- Edge Detection: Zero X Laplacian (68,637 views)
- Calculating statistics on VOI groups (68,592 views)
- MIPAV change list pre-1.0 (68,045 views)
- Cumulative Histogram (67,981 views)
- Autocovariance Coefficients (67,645 views)
- DICOM Conformance (66,907 views)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor (66,835 views)
- Saving and printing images (66,802 views)
- MIPAV configuration files (66,703 views)
- Manual 2D Series (65,827 views)
- Displaying MIPAV Toolbars (65,793 views)
- Histogram Matching (65,020 views)
- Technical Support (64,963 views)
- BSpline registration: Detecting folding (64,748 views)
- Developing plug-in programs (64,300 views)
- Adding noise to images (64,291 views)
- 4 D tools (64,262 views)
- Autocorrelation Coefficients (64,008 views)
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency (63,488 views)
- FAQ: Customizing MIPAV (63,304 views)
- Edge Detection: Zero X Non-Maximum Suppression (62,481 views)
- Face Anonymizer (BET) (62,406 views)
- Image Calculator: Advanced image calculator options (61,401 views)
- Image Calculator (60,895 views)
- Converting image datasets to different data types (60,656 views)
- Extract Brain: Extract Brain Surface (BET) (60,467 views)
- Modifying Contours (59,496 views)
- Working with DICOM Images (59,236 views)
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching) (59,029 views)
- MIPAV change list 2.x (58,534 views)
- Examples (58,439 views)
- FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? (58,437 views)
- Extract Surface (Marching Cubes) (58,422 views)
- Analyzing Images (58,245 views)
- Extract Brain: Extract Brain Surface (BSE) (57,909 views)
- Matrix, Plot, LUT, VOI and Surface files (57,700 views)
- Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs (56,885 views)
- Maximum Intensity Projection (56,448 views)
- FAQ: Trimming VOIs (56,049 views)
- Filters (Spatial): Coherence-Enhancing Diffusion (55,824 views)
- MIPAV change list 1.xx (55,786 views)
- Microscopy: Blind Deconvolution (55,616 views)
- Protecting patient privacy using Anonymize (55,304 views)
- FAQ: How can I view the debugging output of MIPAV? (55,138 views)
- Filters (Spatial): Nonlinear Noise Reduction (55,101 views)
- ImageJ (54,974 views)
- Visualizing Images: Displaying images using the lightbox view (54,874 views)
- Volume Renderer (54,138 views)
- Slice tools (53,867 views)
- Degrees of freedom (53,844 views)
- Segmenting Images Using Contours and Masks: Generating Masks (53,494 views)
- Filters (Spatial): Median (53,292 views)
- Filters (Spatial) Laplacian (53,167 views)
- MIPAV change list 4.x.x (53,118 views)
- Segmenting Images Using Contours and Masks (53,008 views)
- NEIRetinalRegistration (52,970 views)
- Fuzzy C-Means: Multispectral and Single Channel Algorithms (52,937 views)
- B-Spline Automatic Registration Dialog box (52,907 views)
- Filters (Spatial): Gaussian Blur (52,898 views)
- FAQ: How do I setup and use Active stereo display in MIPAV? (52,670 views)
- Visualizing Images: Displaying images using the triplanar-dual view (52,661 views)
- Histogram Equalization: Neighborhood Adaptive (52,624 views)
- Changing Image Datasets Using MIPAV Utilities (52,013 views)
- Filters (Frequency) (51,966 views)
- Using the API documentation (51,740 views)
- Filters (Spatial): Adaptive Noise Reduction (51,673 views)
- Quitting MIPAV (51,479 views)
- How to specify the location of a plugin in the MIPAV menu (51,403 views)
- Installing (51,323 views)
- MIPAV mailing list (50,976 views)
- MIPAV change list 3.x.x (50,611 views)
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools (50,546 views)
- Visualizing Images: Displaying images using the animate view (50,470 views)
- Inserting slices into image datasets (50,249 views)
- Filters (Spatial) Anisotropic Diffusion (50,238 views)
- Visualizing Images (50,203 views)
- Image Calculator: OR (50,108 views)
- Cropping images (50,048 views)
- Preface (50,043 views)
- FAQ: Understanding Changes in MIPAV (49,709 views)
- Developing new tools using the API (49,544 views)
- Creating a mask using the Paint Grow Segmentation method (48,987 views)
- Visualizing Images: Displaying images using the surface plotter view (48,824 views)
- Glossary for MIPAV Help (48,710 views)
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion (48,403 views)
- Filters (Wavelet): De-noising BLS GSM (48,255 views)
- Histogram Equalization: Regional Adaptive (48,221 views)
- Visualizing Images: Displaying images using the triplanar view (48,207 views)
- Changing the legends for functions (48,012 views)
- MIPAV FAQ (47,969 views)
- Posing queries and retrieving images (47,769 views)
- 2D Histogram (47,443 views)
- Microscopy Colocalization Orthogonal Regression (47,407 views)
- Filters (Spatial): Adaptive Path Smooth (47,155 views)
- Visualizing Images:Displaying images using the default view: Magnifying and minifying images (47,146 views)
- Filters (Spatial): Nonmaximum Suppression (46,742 views)
- Examples of MIPAV plug-ins (46,435 views)
- Matching images (46,380 views)
- Threshold (46,283 views)
- Developing Plugin Programs (46,276 views)
- Standard Deviation Threshold (45,947 views)
- Midsagittal line alignment (45,789 views)
- Filters (Wavelet): Thresholding (45,655 views)
- Adding image margins (45,532 views)
- Registration: Landmark-Least Squares (45,403 views)
- Scope of this guide (45,380 views)
- Muscle Segmentation (45,361 views)
- Plug-in CT MD, a typical plug-in program (45,216 views)
- Receiving and sending image files (45,129 views)
- Masking (filling) images (44,964 views)
- Visualizing Images: Displaying images using the default view: Viewing two images together (44,964 views)
- Filters (Spatial): Local Normalization (44,951 views)
- Volume renderer GPU support listing (44,766 views)
- Customizing the appearance of graphs - Modify graph dialog box (44,758 views)
- Filters (Spatial): Unsharp Mask (44,743 views)
- Flipping images (44,742 views)
- Filters (Spatial): Gradient Magnitude (44,713 views)
- Running scripts (44,568 views)
- Understanding MIPAV capabilities (44,558 views)
- Introduction (44,496 views)
- Data Validation module (44,426 views)
- Using the mipav command (44,321 views)
- Recording scripts (44,251 views)
- Replacing pixel/voxel value in images (44,112 views)
- Task 2, Applying Talairach VOIs (43,972 views)
- Modifying image resolutions (43,941 views)
- Testing the connection (43,632 views)
- Creating a self-contained plug-in frame (43,555 views)
- Filters (Spatial): Slice Averaging (43,409 views)
- Quantify Mask (43,370 views)
- TRE Scripts (43,293 views)
- Registration: Time Series Optimized Automatic Registration (43,290 views)
- Registration: Landmark-TPSpline (42,887 views)
- Filters (Spatial): Mean (42,775 views)
- Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints (42,737 views)
- Generating graphs (42,545 views)
- Calculating the volume of masks (42,280 views)
- Image Math (42,190 views)
- Segmenting Images Using Contours and Masks:Converting VOI contours to masks (42,154 views)
- Transform to power of 2 (41,745 views)
- Watershed (41,686 views)
- Subsampling images (41,464 views)
- Subtract VOI Background (41,443 views)
- Planning scripts (41,437 views)
- Filters (Spatial): Mode (41,422 views)
- Histogram summary (41,335 views)
- Visualizing Images: Displaying images using the default view (41,276 views)
- 3-D Surface Views (41,177 views)
- Getting Started with Eclipse (41,151 views)
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system (41,000 views)
- Rotating images (40,930 views)
- Reslice-Isotropic Voxels (40,860 views)
- Image overlays and composites (40,814 views)
- Understanding plug-in programs (40,699 views)
- Editing and deleting scripts (40,685 views)
- PlugInAlgorithmCT MD.java (40,501 views)
- Plug-in CT MD.java (40,087 views)
- MIPAV Script Running (39,957 views)
- Visualizing Images: Displaying images using the surface renderer view (39,676 views)
- MuscleSegmentation plugin (39,550 views)
- Mask (39,374 views)
- Filters (Spatial): Haralick Texture (39,329 views)
- Visualizing Images: Displaying images using the link to another image view (39,286 views)
- Standard tasks provided through commands on the Utilities menu (39,267 views)
- Technical Information (39,262 views)
- DTI: Create List File (38,985 views)
- PlugIn Algorithm Median (38,833 views)
- Developing and using scripts (38,772 views)
- Copying images using the Clone command (38,736 views)
- DTI Estimate tensor (38,726 views)
- Using MIPAV for astronomical image processing (38,538 views)
- Using Shell scripting to lessen typing (38,279 views)
- DTI Pipeline Tutorials (38,215 views)
- Task 3, Segmenting the original image (38,203 views)
- Making a MIPAV Algorithm JISTable (38,176 views)
- Combining scripts and other programs (37,934 views)
- Setting up scripting (37,883 views)
- Task 6, Calculating statistics on VOIs (37,865 views)
- Why can't I see the plugins I install in the menu? (37,804 views)
- Visualizing Images: Displaying images using the cine (movie) view (37,690 views)
- VOIs (37,650 views)
- Using Scripts (Macros) in MIPAV (37,555 views)
- Inverting the image (37,318 views)
- Pad (37,231 views)
- Recording utilities usage with the history feature (37,066 views)
- References (37,048 views)
- PlugIn Algorithm Median (con't, part 4) (36,881 views)
- PlugIn Algorithm Median (con't, part 3) (36,874 views)
- Mapping Brains in Talairach Space (36,684 views)
- Task 5, Copying Talairach VOIs to segmented images (36,212 views)
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image (36,084 views)
- Examples of BSpline registration (35,824 views)
- MIPAV change list 5.x.x (35,684 views)
- Viewing the Talairach grid on Talairach images (34,473 views)
- Select Algorithms and Brain Tools for Talairach Transform (33,338 views)
- Data Upload module (32,935 views)
- Sample images (32,919 views)
- Transform nonlinear (32,832 views)
- Supported file formats (32,397 views)
- How to specify the script name of a plugin (32,053 views)
- Algorithms used to draw VOI (30,741 views)
- MIPAV Script Recording (27,917 views)
- Load and save profile (27,381 views)
- PlugIn Algorithm Median (con't) (27,243 views)
- PlugIn Algorithm Median (con't, part 2) (26,567 views)
- Background (26,241 views)
- Transformation matrix (25,691 views)
- Video tutorials (25,265 views)
- Data Repository tools (25,071 views)
- Contributing code to MIPAV (23,907 views)
- Building and compiling plug-in programs (23,628 views)
- MIPAV class (23,026 views)
- Mosaic Registration (18,963 views)
- Data Download module (18,446 views)
- Viewing MIPAV news and updates (16,875 views)
- Histogram Cumulative (16,373 views)
- Figure 1 (15,387 views)
- Installing a plug-in (14,644 views)
- Supported algorithms (12,887 views)
- Filters (Spatial): Kernel Regression (11,487 views)
- Supported utilities (10,948 views)
- FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux? (9,738 views)
- Connecting to SRB BIRN (4,884 views)
- To show the splash screen (4,879 views)
- Volume 1, Basics (4,809 views)
- PlugInDialogCT MD.java (4,375 views)
- Histogram (3,915 views)
- Conventions used in this guide (3,844 views)
- Eclipse installation and configuration documentation (2,968 views)
- Making a MIPAV Algorithm Scriptable (2,480 views)
- Crontab notes (2,047 views)
- How this guide is organized (2,032 views)
- Volume 2, Algorithms (1,867 views)
- Where to find more information (1,732 views)
- Skills you need to perform tasks in MIPAV (1,726 views)
- Who should use this guide (1,662 views)
- Documentation of MIPAV contributions by Geometric Tools (1,449 views)
- Saving a history of actions on images (1,436 views)
- Subversion topics (1,250 views)
- The SRB tab of the MIPAV options dialog box (914 views)
