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- Main Page (315,280 views)
- MIPAV Help (298,312 views)
- MIPAV change list (273,727 views)
- Image formats descriptions (197,370 views)
- DTI Pipeline (183,678 views)
- MIPAV feature list (134,810 views)
- Introducing MIPAV (126,719 views)
- Changing Image Contrast (125,121 views)
- Customizing MIPAV (123,033 views)
- Converting non-DICOM image files to DICOM format (118,543 views)
- Getting Started Quickly with MIPAV (114,894 views)
- Displaying images (114,474 views)
- Writing MIPAV plugins without MIPAV source code (113,537 views)
- Allocating Memory in MIPAV (113,404 views)
- Installing mipav (113,183 views)
- Prostate segmentation and surface reconstruction (111,618 views)
- Supported Formats (105,968 views)
- Image submission plug-in (105,378 views)
- B-Spline Automatic Registration (104,156 views)
- Publications (103,641 views)
- Creating new images (101,559 views)
- FAQ: Understanding Memory (101,407 views)
- Wiki help testing (100,107 views)
- Muscle Segmentation problems at UCSD (99,337 views)
- Sending and retrieving DICOM images (98,459 views)
- Cost functions used in MIPAV algorithms (98,302 views)
- MIPAV system requirements (97,266 views)
- Opening and loading image files (96,072 views)
- Morphology (93,096 views)
- Interpolation methods used in MIPAV (92,057 views)
- Transform (90,778 views)
- Swap slices and swap volumes (90,552 views)
- Transform: Conformal Mapping Algorithms (88,922 views)
- Understanding Image Basics (88,320 views)
- Hough Transform (88,072 views)
- FAQ: Understanding Image Basics (87,426 views)
- Registration: Manual 2D Series (86,865 views)
- Using MIPAV Algorithms (86,863 views)
- MIPAV toolbars (86,113 views)
- Delineating volumes of interest (VOIs) (84,835 views)
- Automatic de-Skulling (84,053 views)
- Map IDs (83,709 views)
- Displaying and editing DICOM tag information (83,549 views)
- Reviewing VOI statistics (82,663 views)
- Calculating VOI statistics (78,838 views)
- DTI pipeline interface (78,721 views)
- Optimized automatic registration 3D (75,657 views)
- Segmenting Images Using Contours and Masks: Using contours to segment a VOI (74,401 views)
- Fast Fourier Transformation (FFT) (74,013 views)
- DTI Color Display (73,788 views)
- Barrel Distortion Correction (73,566 views)
- Browsing DICOM images (73,427 views)
- Shading Correction: Inhomogeneity N3 Correction (70,495 views)
- Correcting image spacing (69,970 views)
- Calculating statistics on VOI groups (68,433 views)
- Edge Detection: Zero X Laplacian (68,260 views)
- MIPAV change list pre-1.0 (67,958 views)
- Cumulative Histogram (67,780 views)
- Autocovariance Coefficients (67,256 views)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor (66,717 views)
- Saving and printing images (66,638 views)
- DICOM Conformance (66,564 views)
- MIPAV configuration files (66,561 views)
- Displaying MIPAV Toolbars (65,627 views)
- Manual 2D Series (65,475 views)
- Histogram Matching (64,928 views)
- Technical Support (64,793 views)
- BSpline registration: Detecting folding (64,639 views)
- Developing plug-in programs (64,135 views)
- 4 D tools (64,118 views)
- Adding noise to images (64,045 views)
- Autocorrelation Coefficients (63,730 views)
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency (63,214 views)
- FAQ: Customizing MIPAV (63,176 views)
- Edge Detection: Zero X Non-Maximum Suppression (62,323 views)
- Face Anonymizer (BET) (62,208 views)
- Image Calculator: Advanced image calculator options (61,258 views)
- Converting image datasets to different data types (60,544 views)
- Image Calculator (60,478 views)
- Extract Brain: Extract Brain Surface (BET) (60,305 views)
- Modifying Contours (59,305 views)
- Working with DICOM Images (59,065 views)
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching) (58,897 views)
- FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? (58,363 views)
- Extract Surface (Marching Cubes) (58,268 views)
- Examples (58,223 views)
- MIPAV change list 2.x (58,167 views)
- Analyzing Images (57,998 views)
- Extract Brain: Extract Brain Surface (BSE) (57,755 views)
- Matrix, Plot, LUT, VOI and Surface files (57,511 views)
- Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs (56,790 views)
- Maximum Intensity Projection (56,316 views)
- FAQ: Trimming VOIs (55,890 views)
- MIPAV change list 1.xx (55,671 views)
- Filters (Spatial): Coherence-Enhancing Diffusion (55,642 views)
- Microscopy: Blind Deconvolution (55,527 views)
- Protecting patient privacy using Anonymize (55,192 views)
- FAQ: How can I view the debugging output of MIPAV? (55,049 views)
- Filters (Spatial): Nonlinear Noise Reduction (55,024 views)
- ImageJ (54,777 views)
- Visualizing Images: Displaying images using the lightbox view (54,697 views)
- Volume Renderer (53,887 views)
- Degrees of freedom (53,738 views)
- Slice tools (53,653 views)
- Segmenting Images Using Contours and Masks: Generating Masks (53,301 views)
- Filters (Spatial): Median (53,153 views)
- Filters (Spatial) Laplacian (53,066 views)
- Segmenting Images Using Contours and Masks (52,902 views)
- B-Spline Automatic Registration Dialog box (52,819 views)
- Fuzzy C-Means: Multispectral and Single Channel Algorithms (52,813 views)
- Filters (Spatial): Gaussian Blur (52,780 views)
- NEIRetinalRegistration (52,744 views)
- MIPAV change list 4.x.x (52,722 views)
- FAQ: How do I setup and use Active stereo display in MIPAV? (52,606 views)
- Histogram Equalization: Neighborhood Adaptive (52,502 views)
- Visualizing Images: Displaying images using the triplanar-dual view (52,460 views)
- Changing Image Datasets Using MIPAV Utilities (51,915 views)
- Filters (Frequency) (51,850 views)
- Using the API documentation (51,676 views)
- Filters (Spatial): Adaptive Noise Reduction (51,509 views)
- How to specify the location of a plugin in the MIPAV menu (51,320 views)
- Quitting MIPAV (51,280 views)
- Installing (51,192 views)
- MIPAV mailing list (50,860 views)
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools (50,395 views)
- Visualizing Images: Displaying images using the animate view (50,378 views)
- MIPAV change list 3.x.x (50,221 views)
- Filters (Spatial) Anisotropic Diffusion (50,124 views)
- Inserting slices into image datasets (50,108 views)
- Visualizing Images (50,073 views)
- Image Calculator: OR (50,005 views)
- Cropping images (49,957 views)
- Preface (49,892 views)
- FAQ: Understanding Changes in MIPAV (49,600 views)
- Developing new tools using the API (49,423 views)
- Creating a mask using the Paint Grow Segmentation method (48,914 views)
- Visualizing Images: Displaying images using the surface plotter view (48,753 views)
- Glossary for MIPAV Help (48,652 views)
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion (48,262 views)
- Filters (Wavelet): De-noising BLS GSM (48,154 views)
- Histogram Equalization: Regional Adaptive (48,091 views)
- Visualizing Images: Displaying images using the triplanar view (48,081 views)
- Changing the legends for functions (47,863 views)
- MIPAV FAQ (47,856 views)
- Posing queries and retrieving images (47,643 views)
- 2D Histogram (47,369 views)
- Microscopy Colocalization Orthogonal Regression (47,341 views)
- Filters (Spatial): Adaptive Path Smooth (47,054 views)
- Visualizing Images:Displaying images using the default view: Magnifying and minifying images (47,046 views)
- Filters (Spatial): Nonmaximum Suppression (46,633 views)
- Examples of MIPAV plug-ins (46,360 views)
- Matching images (46,302 views)
- Threshold (46,241 views)
- Developing Plugin Programs (46,193 views)
- Standard Deviation Threshold (45,892 views)
- Midsagittal line alignment (45,678 views)
- Filters (Wavelet): Thresholding (45,572 views)
- Adding image margins (45,303 views)
- Muscle Segmentation (45,290 views)
- Registration: Landmark-Least Squares (45,283 views)
- Scope of this guide (45,273 views)
- Plug-in CT MD, a typical plug-in program (45,137 views)
- Receiving and sending image files (45,054 views)
- Visualizing Images: Displaying images using the default view: Viewing two images together (44,922 views)
- Masking (filling) images (44,864 views)
- Filters (Spatial): Local Normalization (44,829 views)
- Volume renderer GPU support listing (44,704 views)
- Customizing the appearance of graphs - Modify graph dialog box (44,673 views)
- Flipping images (44,637 views)
- Filters (Spatial): Unsharp Mask (44,632 views)
- Filters (Spatial): Gradient Magnitude (44,625 views)
- Understanding MIPAV capabilities (44,514 views)
- Running scripts (44,483 views)
- Introduction (44,373 views)
- Using the mipav command (44,285 views)
- Recording scripts (44,147 views)
- Replacing pixel/voxel value in images (44,050 views)
- Data Validation module (44,038 views)
- Task 2, Applying Talairach VOIs (43,910 views)
- Modifying image resolutions (43,866 views)
- Testing the connection (43,566 views)
- Creating a self-contained plug-in frame (43,489 views)
- Quantify Mask (43,315 views)
- Filters (Spatial): Slice Averaging (43,295 views)
- TRE Scripts (43,255 views)
- Registration: Time Series Optimized Automatic Registration (43,193 views)
- Registration: Landmark-TPSpline (42,777 views)
- Filters (Spatial): Mean (42,685 views)
- Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints (42,632 views)
- Generating graphs (42,486 views)
- Calculating the volume of masks (42,208 views)
- Image Math (42,072 views)
- Segmenting Images Using Contours and Masks:Converting VOI contours to masks (42,070 views)
- Transform to power of 2 (41,659 views)
- Watershed (41,651 views)
- Subsampling images (41,411 views)
- Subtract VOI Background (41,374 views)
- Planning scripts (41,372 views)
- Filters (Spatial): Mode (41,321 views)
- Histogram summary (41,238 views)
- Visualizing Images: Displaying images using the default view (41,236 views)
- 3-D Surface Views (41,130 views)
- Getting Started with Eclipse (41,099 views)
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system (40,897 views)
- Rotating images (40,880 views)
- Reslice-Isotropic Voxels (40,808 views)
- Image overlays and composites (40,745 views)
- Understanding plug-in programs (40,641 views)
- Editing and deleting scripts (40,633 views)
- PlugInAlgorithmCT MD.java (40,438 views)
- Plug-in CT MD.java (40,037 views)
- MIPAV Script Running (39,899 views)
- Visualizing Images: Displaying images using the surface renderer view (39,634 views)
- MuscleSegmentation plugin (39,487 views)
- Mask (39,311 views)
- Filters (Spatial): Haralick Texture (39,260 views)
- Visualizing Images: Displaying images using the link to another image view (39,232 views)
- Technical Information (39,204 views)
- Standard tasks provided through commands on the Utilities menu (39,196 views)
- DTI: Create List File (38,905 views)
- PlugIn Algorithm Median (38,781 views)
- Developing and using scripts (38,697 views)
- Copying images using the Clone command (38,681 views)
- DTI Estimate tensor (38,671 views)
- Using Shell scripting to lessen typing (38,244 views)
- Task 3, Segmenting the original image (38,157 views)
- Making a MIPAV Algorithm JISTable (38,119 views)
- DTI Pipeline Tutorials (38,098 views)
- Using MIPAV for astronomical image processing (38,058 views)
- Combining scripts and other programs (37,892 views)
- Task 6, Calculating statistics on VOIs (37,839 views)
- Setting up scripting (37,823 views)
- Why can't I see the plugins I install in the menu? (37,775 views)
- Visualizing Images: Displaying images using the cine (movie) view (37,651 views)
- VOIs (37,630 views)
- Using Scripts (Macros) in MIPAV (37,505 views)
- Inverting the image (37,259 views)
- Pad (37,170 views)
- Recording utilities usage with the history feature (37,002 views)
- References (36,993 views)
- PlugIn Algorithm Median (con't, part 4) (36,827 views)
- PlugIn Algorithm Median (con't, part 3) (36,822 views)
- Mapping Brains in Talairach Space (36,632 views)
- Task 5, Copying Talairach VOIs to segmented images (36,186 views)
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image (36,064 views)
- Examples of BSpline registration (35,769 views)
- MIPAV change list 5.x.x (35,305 views)
- Viewing the Talairach grid on Talairach images (34,450 views)
- Select Algorithms and Brain Tools for Talairach Transform (33,256 views)
- Sample images (32,870 views)
- Transform nonlinear (32,810 views)
- Data Upload module (32,595 views)
- Supported file formats (32,338 views)
- How to specify the script name of a plugin (31,988 views)
- Algorithms used to draw VOI (30,564 views)
- MIPAV Script Recording (27,873 views)
- Load and save profile (27,340 views)
- PlugIn Algorithm Median (con't) (27,227 views)
- PlugIn Algorithm Median (con't, part 2) (26,522 views)
- Background (26,224 views)
- Transformation matrix (25,674 views)
- Video tutorials (25,241 views)
- Data Repository tools (24,868 views)
- Contributing code to MIPAV (23,863 views)
- Building and compiling plug-in programs (23,587 views)
- MIPAV class (22,928 views)
- Mosaic Registration (18,952 views)
- Data Download module (18,282 views)
- Viewing MIPAV news and updates (16,869 views)
- Histogram Cumulative (16,366 views)
- Figure 1 (15,381 views)
- Installing a plug-in (14,600 views)
- Supported algorithms (12,864 views)
- Filters (Spatial): Kernel Regression (11,467 views)
- Supported utilities (10,911 views)
- FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux? (9,731 views)
- Connecting to SRB BIRN (4,867 views)
- To show the splash screen (4,859 views)
- Volume 1, Basics (4,770 views)
- PlugInDialogCT MD.java (4,340 views)
- Histogram (3,884 views)
- Conventions used in this guide (3,814 views)
- Eclipse installation and configuration documentation (2,941 views)
- Making a MIPAV Algorithm Scriptable (2,472 views)
- Crontab notes (2,034 views)
- How this guide is organized (2,018 views)
- Volume 2, Algorithms (1,851 views)
- Skills you need to perform tasks in MIPAV (1,714 views)
- Where to find more information (1,713 views)
- Who should use this guide (1,647 views)
- Saving a history of actions on images (1,430 views)
- Documentation of MIPAV contributions by Geometric Tools (1,423 views)
- Subversion topics (1,245 views)
- The SRB tab of the MIPAV options dialog box (908 views)
