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- Main Page (316,655 views)
- MIPAV Help (299,371 views)
- MIPAV change list (276,319 views)
- Image formats descriptions (198,039 views)
- DTI Pipeline (184,208 views)
- MIPAV feature list (135,660 views)
- Introducing MIPAV (127,141 views)
- Changing Image Contrast (125,379 views)
- Customizing MIPAV (123,643 views)
- Converting non-DICOM image files to DICOM format (118,741 views)
- Getting Started Quickly with MIPAV (115,173 views)
- Displaying images (114,699 views)
- Writing MIPAV plugins without MIPAV source code (113,810 views)
- Allocating Memory in MIPAV (113,697 views)
- Installing mipav (113,525 views)
- Prostate segmentation and surface reconstruction (112,035 views)
- Image submission plug-in (106,709 views)
- Supported Formats (106,204 views)
- B-Spline Automatic Registration (104,477 views)
- Publications (104,100 views)
- Creating new images (102,120 views)
- FAQ: Understanding Memory (101,886 views)
- Wiki help testing (100,450 views)
- Muscle Segmentation problems at UCSD (99,357 views)
- Sending and retrieving DICOM images (98,820 views)
- Cost functions used in MIPAV algorithms (98,397 views)
- MIPAV system requirements (97,884 views)
- Opening and loading image files (96,274 views)
- Morphology (93,320 views)
- Interpolation methods used in MIPAV (92,256 views)
- Transform (91,474 views)
- Swap slices and swap volumes (90,646 views)
- Transform: Conformal Mapping Algorithms (89,440 views)
- Hough Transform (88,405 views)
- Understanding Image Basics (88,404 views)
- FAQ: Understanding Image Basics (87,598 views)
- Registration: Manual 2D Series (87,235 views)
- Using MIPAV Algorithms (87,117 views)
- MIPAV toolbars (86,385 views)
- Delineating volumes of interest (VOIs) (85,030 views)
- Automatic de-Skulling (84,797 views)
- Map IDs (84,301 views)
- Displaying and editing DICOM tag information (83,701 views)
- Reviewing VOI statistics (82,785 views)
- DTI pipeline interface (79,105 views)
- Calculating VOI statistics (79,033 views)
- Optimized automatic registration 3D (75,720 views)
- Segmenting Images Using Contours and Masks: Using contours to segment a VOI (74,563 views)
- Fast Fourier Transformation (FFT) (74,180 views)
- DTI Color Display (74,116 views)
- Browsing DICOM images (73,648 views)
- Barrel Distortion Correction (73,620 views)
- Shading Correction: Inhomogeneity N3 Correction (70,661 views)
- Correcting image spacing (70,036 views)
- Calculating statistics on VOI groups (68,562 views)
- Edge Detection: Zero X Laplacian (68,514 views)
- MIPAV change list pre-1.0 (67,997 views)
- Cumulative Histogram (67,951 views)
- Autocovariance Coefficients (67,472 views)
- DICOM Conformance (66,808 views)
- Saving and printing images (66,777 views)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor (66,761 views)
- MIPAV configuration files (66,676 views)
- Manual 2D Series (65,799 views)
- Displaying MIPAV Toolbars (65,732 views)
- Histogram Matching (64,995 views)
- Technical Support (64,959 views)
- BSpline registration: Detecting folding (64,719 views)
- 4 D tools (64,232 views)
- Developing plug-in programs (64,221 views)
- Adding noise to images (64,137 views)
- Autocorrelation Coefficients (63,823 views)
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency (63,365 views)
- FAQ: Customizing MIPAV (63,246 views)
- Edge Detection: Zero X Non-Maximum Suppression (62,423 views)
- Face Anonymizer (BET) (62,341 views)
- Image Calculator: Advanced image calculator options (61,341 views)
- Image Calculator (60,854 views)
- Converting image datasets to different data types (60,627 views)
- Extract Brain: Extract Brain Surface (BET) (60,366 views)
- Modifying Contours (59,471 views)
- Working with DICOM Images (59,231 views)
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching) (58,979 views)
- MIPAV change list 2.x (58,493 views)
- FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? (58,408 views)
- Extract Surface (Marching Cubes) (58,392 views)
- Examples (58,330 views)
- Analyzing Images (58,098 views)
- Extract Brain: Extract Brain Surface (BSE) (57,823 views)
- Matrix, Plot, LUT, VOI and Surface files (57,648 views)
- Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs (56,881 views)
- Maximum Intensity Projection (56,407 views)
- FAQ: Trimming VOIs (55,956 views)
- Filters (Spatial): Coherence-Enhancing Diffusion (55,774 views)
- MIPAV change list 1.xx (55,703 views)
- Microscopy: Blind Deconvolution (55,566 views)
- Protecting patient privacy using Anonymize (55,265 views)
- FAQ: How can I view the debugging output of MIPAV? (55,109 views)
- Filters (Spatial): Nonlinear Noise Reduction (55,051 views)
- ImageJ (54,949 views)
- Visualizing Images: Displaying images using the lightbox view (54,870 views)
- Volume Renderer (54,041 views)
- Slice tools (53,842 views)
- Degrees of freedom (53,815 views)
- Segmenting Images Using Contours and Masks: Generating Masks (53,436 views)
- Filters (Spatial): Median (53,218 views)
- Filters (Spatial) Laplacian (53,129 views)
- MIPAV change list 4.x.x (53,063 views)
- Segmenting Images Using Contours and Masks (52,982 views)
- NEIRetinalRegistration (52,943 views)
- B-Spline Automatic Registration Dialog box (52,906 views)
- Fuzzy C-Means: Multispectral and Single Channel Algorithms (52,887 views)
- Filters (Spatial): Gaussian Blur (52,847 views)
- Visualizing Images: Displaying images using the triplanar-dual view (52,657 views)
- FAQ: How do I setup and use Active stereo display in MIPAV? (52,636 views)
- Histogram Equalization: Neighborhood Adaptive (52,574 views)
- Changing Image Datasets Using MIPAV Utilities (51,972 views)
- Filters (Frequency) (51,939 views)
- Using the API documentation (51,738 views)
- Filters (Spatial): Adaptive Noise Reduction (51,622 views)
- Quitting MIPAV (51,401 views)
- How to specify the location of a plugin in the MIPAV menu (51,363 views)
- Installing (51,298 views)
- MIPAV mailing list (50,950 views)
- MIPAV change list 3.x.x (50,563 views)
- Visualizing Images: Displaying images using the animate view (50,468 views)
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools (50,455 views)
- Inserting slices into image datasets (50,186 views)
- Filters (Spatial) Anisotropic Diffusion (50,181 views)
- Visualizing Images (50,119 views)
- Image Calculator: OR (50,058 views)
- Preface (50,017 views)
- Cropping images (50,011 views)
- FAQ: Understanding Changes in MIPAV (49,651 views)
- Developing new tools using the API (49,472 views)
- Creating a mask using the Paint Grow Segmentation method (48,958 views)
- Visualizing Images: Displaying images using the surface plotter view (48,822 views)
- Glossary for MIPAV Help (48,685 views)
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion (48,344 views)
- Filters (Wavelet): De-noising BLS GSM (48,204 views)
- Visualizing Images: Displaying images using the triplanar view (48,178 views)
- Histogram Equalization: Regional Adaptive (48,147 views)
- Changing the legends for functions (47,983 views)
- MIPAV FAQ (47,944 views)
- Posing queries and retrieving images (47,744 views)
- 2D Histogram (47,398 views)
- Microscopy Colocalization Orthogonal Regression (47,382 views)
- Visualizing Images:Displaying images using the default view: Magnifying and minifying images (47,110 views)
- Filters (Spatial): Adaptive Path Smooth (47,105 views)
- Filters (Spatial): Nonmaximum Suppression (46,675 views)
- Examples of MIPAV plug-ins (46,378 views)
- Matching images (46,347 views)
- Threshold (46,275 views)
- Developing Plugin Programs (46,247 views)
- Standard Deviation Threshold (45,946 views)
- Midsagittal line alignment (45,740 views)
- Filters (Wavelet): Thresholding (45,605 views)
- Adding image margins (45,387 views)
- Scope of this guide (45,355 views)
- Registration: Landmark-Least Squares (45,343 views)
- Muscle Segmentation (45,335 views)
- Plug-in CT MD, a typical plug-in program (45,181 views)
- Receiving and sending image files (45,102 views)
- Visualizing Images: Displaying images using the default view: Viewing two images together (44,962 views)
- Masking (filling) images (44,937 views)
- Filters (Spatial): Local Normalization (44,869 views)
- Volume renderer GPU support listing (44,765 views)
- Customizing the appearance of graphs - Modify graph dialog box (44,725 views)
- Filters (Spatial): Unsharp Mask (44,693 views)
- Flipping images (44,679 views)
- Filters (Spatial): Gradient Magnitude (44,663 views)
- Understanding MIPAV capabilities (44,556 views)
- Running scripts (44,511 views)
- Introduction (44,449 views)
- Data Validation module (44,426 views)
- Using the mipav command (44,319 views)
- Recording scripts (44,226 views)
- Replacing pixel/voxel value in images (44,082 views)
- Task 2, Applying Talairach VOIs (43,971 views)
- Modifying image resolutions (43,915 views)
- Testing the connection (43,631 views)
- Creating a self-contained plug-in frame (43,526 views)
- Filters (Spatial): Slice Averaging (43,359 views)
- Quantify Mask (43,345 views)
- TRE Scripts (43,291 views)
- Registration: Time Series Optimized Automatic Registration (43,224 views)
- Registration: Landmark-TPSpline (42,826 views)
- Filters (Spatial): Mean (42,720 views)
- Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints (42,680 views)
- Generating graphs (42,520 views)
- Calculating the volume of masks (42,251 views)
- Image Math (42,134 views)
- Segmenting Images Using Contours and Masks:Converting VOI contours to masks (42,090 views)
- Transform to power of 2 (41,744 views)
- Watershed (41,683 views)
- Subsampling images (41,438 views)
- Subtract VOI Background (41,433 views)
- Planning scripts (41,412 views)
- Filters (Spatial): Mode (41,348 views)
- Histogram summary (41,279 views)
- Visualizing Images: Displaying images using the default view (41,274 views)
- 3-D Surface Views (41,148 views)
- Getting Started with Eclipse (41,141 views)
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system (40,996 views)
- Rotating images (40,905 views)
- Reslice-Isotropic Voxels (40,833 views)
- Image overlays and composites (40,781 views)
- Understanding plug-in programs (40,691 views)
- Editing and deleting scripts (40,655 views)
- PlugInAlgorithmCT MD.java (40,468 views)
- Plug-in CT MD.java (40,062 views)
- MIPAV Script Running (39,921 views)
- Visualizing Images: Displaying images using the surface renderer view (39,674 views)
- MuscleSegmentation plugin (39,518 views)
- Mask (39,348 views)
- Visualizing Images: Displaying images using the link to another image view (39,283 views)
- Filters (Spatial): Haralick Texture (39,279 views)
- Standard tasks provided through commands on the Utilities menu (39,265 views)
- Technical Information (39,253 views)
- DTI: Create List File (38,927 views)
- PlugIn Algorithm Median (38,804 views)
- Developing and using scripts (38,734 views)
- Copying images using the Clone command (38,704 views)
- DTI Estimate tensor (38,697 views)
- Using MIPAV for astronomical image processing (38,535 views)
- Using Shell scripting to lessen typing (38,278 views)
- DTI Pipeline Tutorials (38,215 views)
- Task 3, Segmenting the original image (38,201 views)
- Making a MIPAV Algorithm JISTable (38,151 views)
- Combining scripts and other programs (37,905 views)
- Task 6, Calculating statistics on VOIs (37,863 views)
- Setting up scripting (37,850 views)
- Why can't I see the plugins I install in the menu? (37,801 views)
- Visualizing Images: Displaying images using the cine (movie) view (37,678 views)
- VOIs (37,649 views)
- Using Scripts (Macros) in MIPAV (37,547 views)
- Inverting the image (37,293 views)
- Pad (37,205 views)
- Recording utilities usage with the history feature (37,041 views)
- References (37,023 views)
- PlugIn Algorithm Median (con't, part 4) (36,848 views)
- PlugIn Algorithm Median (con't, part 3) (36,840 views)
- Mapping Brains in Talairach Space (36,658 views)
- Task 5, Copying Talairach VOIs to segmented images (36,211 views)
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image (36,083 views)
- Examples of BSpline registration (35,782 views)
- MIPAV change list 5.x.x (35,643 views)
- Viewing the Talairach grid on Talairach images (34,472 views)
- Select Algorithms and Brain Tools for Talairach Transform (33,312 views)
- Data Upload module (32,935 views)
