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- Main Page (315,138 views)
- MIPAV Help (298,181 views)
- MIPAV change list (273,667 views)
- Image formats descriptions (197,221 views)
- DTI Pipeline (183,606 views)
- MIPAV feature list (134,776 views)
- Introducing MIPAV (126,629 views)
- Changing Image Contrast (125,047 views)
- Customizing MIPAV (122,963 views)
- Converting non-DICOM image files to DICOM format (118,406 views)
- Getting Started Quickly with MIPAV (114,819 views)
- Displaying images (114,404 views)
- Writing MIPAV plugins without MIPAV source code (113,498 views)
- Allocating Memory in MIPAV (113,143 views)
- Installing mipav (113,109 views)
- Prostate segmentation and surface reconstruction (111,615 views)
- Supported Formats (105,967 views)
- Image submission plug-in (105,377 views)
- B-Spline Automatic Registration (104,087 views)
- Publications (103,485 views)
- Creating new images (101,490 views)
- FAQ: Understanding Memory (101,270 views)
- Wiki help testing (100,101 views)
- Muscle Segmentation problems at UCSD (99,336 views)
- Sending and retrieving DICOM images (98,450 views)
- Cost functions used in MIPAV algorithms (98,229 views)
- MIPAV system requirements (97,120 views)
- Opening and loading image files (95,999 views)
- Morphology (92,951 views)
- Interpolation methods used in MIPAV (91,853 views)
- Transform (90,754 views)
- Swap slices and swap volumes (90,423 views)
- Transform: Conformal Mapping Algorithms (88,917 views)
- Understanding Image Basics (88,318 views)
- Hough Transform (87,999 views)
- FAQ: Understanding Image Basics (87,290 views)
- Using MIPAV Algorithms (86,862 views)
- Registration: Manual 2D Series (86,717 views)
- MIPAV toolbars (86,040 views)
- Delineating volumes of interest (VOIs) (84,698 views)
- Automatic de-Skulling (84,036 views)
- Map IDs (83,705 views)
- Displaying and editing DICOM tag information (83,478 views)
- Reviewing VOI statistics (82,519 views)
- Calculating VOI statistics (78,769 views)
- DTI pipeline interface (78,720 views)
- Optimized automatic registration 3D (75,578 views)
- Segmenting Images Using Contours and Masks: Using contours to segment a VOI (74,393 views)
- Fast Fourier Transformation (FFT) (73,876 views)
- DTI Color Display (73,718 views)
- Barrel Distortion Correction (73,480 views)
- Browsing DICOM images (73,359 views)
- Shading Correction: Inhomogeneity N3 Correction (70,487 views)
- Correcting image spacing (69,834 views)
- Calculating statistics on VOI groups (68,365 views)
- Edge Detection: Zero X Laplacian (68,123 views)
- MIPAV change list pre-1.0 (67,856 views)
- Cumulative Histogram (67,709 views)
- Autocovariance Coefficients (67,119 views)
- Saving and printing images (66,633 views)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor (66,501 views)
- DICOM Conformance (66,496 views)
- MIPAV configuration files (66,489 views)
- Displaying MIPAV Toolbars (65,488 views)
- Manual 2D Series (65,399 views)
- Histogram Matching (64,856 views)
- Technical Support (64,791 views)
- BSpline registration: Detecting folding (64,571 views)
- 4 D tools (64,050 views)
- Developing plug-in programs (63,999 views)
- Adding noise to images (63,976 views)
- Autocorrelation Coefficients (63,586 views)
- FAQ: Customizing MIPAV (63,040 views)
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency (62,998 views)
- Edge Detection: Zero X Non-Maximum Suppression (62,187 views)
- Face Anonymizer (BET) (62,069 views)
- Image Calculator: Advanced image calculator options (61,114 views)
- Converting image datasets to different data types (60,475 views)
- Image Calculator (60,402 views)
- Extract Brain: Extract Brain Surface (BET) (60,097 views)
- Modifying Contours (59,233 views)
- Working with DICOM Images (59,065 views)
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching) (58,752 views)
- FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? (58,295 views)
- Extract Surface (Marching Cubes) (58,200 views)
- Examples (58,155 views)
- MIPAV change list 2.x (58,066 views)
- Analyzing Images (57,926 views)
- Extract Brain: Extract Brain Surface (BSE) (57,550 views)
- Matrix, Plot, LUT, VOI and Surface files (57,511 views)
- Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs (56,786 views)
- Maximum Intensity Projection (56,244 views)
- FAQ: Trimming VOIs (55,754 views)
- MIPAV change list 1.xx (55,571 views)
- Filters (Spatial): Coherence-Enhancing Diffusion (55,497 views)
- Microscopy: Blind Deconvolution (55,383 views)
- Protecting patient privacy using Anonymize (55,120 views)
- FAQ: How can I view the debugging output of MIPAV? (54,981 views)
- Filters (Spatial): Nonlinear Noise Reduction (54,880 views)
- ImageJ (54,704 views)
- Visualizing Images: Displaying images using the lightbox view (54,697 views)
- Volume Renderer (53,886 views)
- Degrees of freedom (53,670 views)
- Slice tools (53,649 views)
- Segmenting Images Using Contours and Masks: Generating Masks (53,293 views)
- Filters (Spatial) Laplacian (52,994 views)
- Filters (Spatial): Median (52,937 views)
- Segmenting Images Using Contours and Masks (52,898 views)
- B-Spline Automatic Registration Dialog box (52,818 views)
- NEIRetinalRegistration (52,672 views)
- Fuzzy C-Means: Multispectral and Single Channel Algorithms (52,669 views)
- Filters (Spatial): Gaussian Blur (52,636 views)
- MIPAV change list 4.x.x (52,622 views)
- FAQ: How do I setup and use Active stereo display in MIPAV? (52,534 views)
- Visualizing Images: Displaying images using the triplanar-dual view (52,460 views)
- Histogram Equalization: Neighborhood Adaptive (52,355 views)
- Changing Image Datasets Using MIPAV Utilities (51,847 views)
- Filters (Frequency) (51,777 views)
- Using the API documentation (51,675 views)
- Filters (Spatial): Adaptive Noise Reduction (51,365 views)
- How to specify the location of a plugin in the MIPAV menu (51,247 views)
- Quitting MIPAV (51,208 views)
- Installing (51,120 views)
- MIPAV mailing list (50,788 views)
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools (50,386 views)
- Visualizing Images: Displaying images using the animate view (50,378 views)
- MIPAV change list 3.x.x (50,120 views)
- Visualizing Images (50,028 views)
- Filters (Spatial) Anisotropic Diffusion (49,977 views)
- Inserting slices into image datasets (49,964 views)
- Cropping images (49,889 views)
- Image Calculator: OR (49,860 views)
- Preface (49,747 views)
- FAQ: Understanding Changes in MIPAV (49,464 views)
- Developing new tools using the API (49,327 views)
- Creating a mask using the Paint Grow Segmentation method (48,846 views)
- Visualizing Images: Displaying images using the surface plotter view (48,753 views)
- Glossary for MIPAV Help (48,580 views)
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion (48,118 views)
- Visualizing Images: Displaying images using the triplanar view (48,081 views)
- Filters (Wavelet): De-noising BLS GSM (48,010 views)
- Histogram Equalization: Regional Adaptive (47,875 views)
- Changing the legends for functions (47,794 views)
- MIPAV FAQ (47,784 views)
- Posing queries and retrieving images (47,570 views)
- 2D Histogram (47,291 views)
- Microscopy Colocalization Orthogonal Regression (47,269 views)
- Visualizing Images:Displaying images using the default view: Magnifying and minifying images (47,044 views)
- Filters (Spatial): Adaptive Path Smooth (46,910 views)
- Filters (Spatial): Nonmaximum Suppression (46,488 views)
- Threshold (46,241 views)
- Matching images (46,230 views)
- Examples of MIPAV plug-ins (46,224 views)
- Developing Plugin Programs (46,125 views)
- Standard Deviation Threshold (45,890 views)
- Midsagittal line alignment (45,534 views)
- Filters (Wavelet): Thresholding (45,427 views)
- Scope of this guide (45,265 views)
- Adding image margins (45,234 views)
- Muscle Segmentation (45,218 views)
- Registration: Landmark-Least Squares (45,139 views)
- Plug-in CT MD, a typical plug-in program (45,065 views)
- Receiving and sending image files (44,982 views)
- Visualizing Images: Displaying images using the default view: Viewing two images together (44,922 views)
- Masking (filling) images (44,790 views)
- Volume renderer GPU support listing (44,704 views)
- Filters (Spatial): Local Normalization (44,613 views)
- Customizing the appearance of graphs - Modify graph dialog box (44,605 views)
- Flipping images (44,564 views)
- Understanding MIPAV capabilities (44,514 views)
- Filters (Spatial): Unsharp Mask (44,488 views)
- Filters (Spatial): Gradient Magnitude (44,481 views)
- Running scripts (44,394 views)
- Introduction (44,299 views)
- Using the mipav command (44,285 views)
- Recording scripts (44,075 views)
- Data Validation module (44,036 views)
- Replacing pixel/voxel value in images (43,975 views)
- Task 2, Applying Talairach VOIs (43,910 views)
- Modifying image resolutions (43,794 views)
- Testing the connection (43,566 views)
- Creating a self-contained plug-in frame (43,421 views)
- TRE Scripts (43,255 views)
- Quantify Mask (43,243 views)
- Filters (Spatial): Slice Averaging (43,151 views)
- Registration: Time Series Optimized Automatic Registration (42,970 views)
- Registration: Landmark-TPSpline (42,631 views)
- Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints (42,624 views)
- Filters (Spatial): Mean (42,468 views)
- Generating graphs (42,414 views)
- Calculating the volume of masks (42,139 views)
- Segmenting Images Using Contours and Masks:Converting VOI contours to masks (42,052 views)
- Image Math (41,928 views)
- Transform to power of 2 (41,659 views)
- Watershed (41,651 views)
- Subsampling images (41,405 views)
- Subtract VOI Background (41,374 views)
- Planning scripts (41,300 views)
- Visualizing Images: Displaying images using the default view (41,235 views)
- Filters (Spatial): Mode (41,105 views)
- Getting Started with Eclipse (41,095 views)
- Histogram summary (41,094 views)
- 3-D Surface Views (41,060 views)
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system (40,897 views)
- Rotating images (40,808 views)
- Reslice-Isotropic Voxels (40,736 views)
- Image overlays and composites (40,672 views)
- Understanding plug-in programs (40,641 views)
- Editing and deleting scripts (40,565 views)
- PlugInAlgorithmCT MD.java (40,366 views)
- Plug-in CT MD.java (39,965 views)
- MIPAV Script Running (39,822 views)
- Visualizing Images: Displaying images using the surface renderer view (39,634 views)
- MuscleSegmentation plugin (39,415 views)
- Mask (39,238 views)
- Visualizing Images: Displaying images using the link to another image view (39,232 views)
- Technical Information (39,204 views)
- Standard tasks provided through commands on the Utilities menu (39,196 views)
- Filters (Spatial): Haralick Texture (39,116 views)
- DTI: Create List File (38,769 views)
- PlugIn Algorithm Median (38,706 views)
- Developing and using scripts (38,629 views)
- Copying images using the Clone command (38,610 views)
- DTI Estimate tensor (38,603 views)
- Using Shell scripting to lessen typing (38,244 views)
- Task 3, Segmenting the original image (38,157 views)
- DTI Pipeline Tutorials (38,098 views)
- Using MIPAV for astronomical image processing (38,056 views)
- Making a MIPAV Algorithm JISTable (38,047 views)
- Task 6, Calculating statistics on VOIs (37,837 views)
- Combining scripts and other programs (37,824 views)
- Setting up scripting (37,819 views)
- Why can't I see the plugins I install in the menu? (37,775 views)
- Visualizing Images: Displaying images using the cine (movie) view (37,648 views)
- VOIs (37,630 views)
- Using Scripts (Macros) in MIPAV (37,505 views)
- Inverting the image (37,187 views)
- Pad (37,098 views)
- Recording utilities usage with the history feature (36,930 views)
- References (36,921 views)
- PlugIn Algorithm Median (con't, part 4) (36,755 views)
- PlugIn Algorithm Median (con't, part 3) (36,749 views)
- Mapping Brains in Talairach Space (36,560 views)
- Task 5, Copying Talairach VOIs to segmented images (36,185 views)
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image (36,064 views)
- Examples of BSpline registration (35,747 views)
- MIPAV change list 5.x.x (35,205 views)
- Viewing the Talairach grid on Talairach images (34,450 views)
- Select Algorithms and Brain Tools for Talairach Transform (33,256 views)
- Sample images (32,870 views)
