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  1. Wiki help testing‏‎ (258 revisions)
  2. DTI Pipeline‏‎ (206 revisions)
  3. Image submission plug-in‏‎ (180 revisions)
  4. Using MIPAV for astronomical image processing‏‎ (142 revisions)
  5. Prostate segmentation and surface reconstruction‏‎ (115 revisions)
  6. Swap slices and swap volumes‏‎ (106 revisions)
  7. Automatic de-Skulling‏‎ (106 revisions)
  8. Transform‏‎ (103 revisions)
  9. Getting Started Quickly with MIPAV‏‎ (94 revisions)
  10. B-Spline Automatic Registration‏‎ (90 revisions)
  11. Writing MIPAV plugins without MIPAV source code‏‎ (89 revisions)
  12. Customizing MIPAV‏‎ (89 revisions)
  13. Image formats descriptions‏‎ (85 revisions)
  14. Map IDs‏‎ (84 revisions)
  15. Changing Image Contrast‏‎ (78 revisions)
  16. Main Page‏‎ (76 revisions)
  17. Registration: Manual 2D Series‏‎ (76 revisions)
  18. Allocating Memory in MIPAV‏‎ (75 revisions)
  19. Using MIPAV Algorithms‏‎ (72 revisions)
  20. Interpolation methods used in MIPAV‏‎ (71 revisions)
  21. Creating new images‏‎ (70 revisions)
  22. Publications‏‎ (68 revisions)
  23. Transform: Conformal Mapping Algorithms‏‎ (66 revisions)
  24. Understanding Image Basics‏‎ (64 revisions)
  25. Cost functions used in MIPAV algorithms‏‎ (60 revisions)
  26. MIPAV system requirements‏‎ (59 revisions)
  27. Displaying images‏‎ (58 revisions)
  28. Reviewing VOI statistics‏‎ (54 revisions)
  29. Introducing MIPAV‏‎ (54 revisions)
  30. FAQ: Understanding Memory‏‎ (52 revisions)
  31. DTI pipeline interface‏‎ (51 revisions)
  32. Supported Formats‏‎ (49 revisions)
  33. MIPAV toolbars‏‎ (49 revisions)
  34. Morphology‏‎ (48 revisions)
  35. Optimized automatic registration 3D‏‎ (47 revisions)
  36. Data Validation module‏‎ (44 revisions)
  37. Installing mipav‏‎ (43 revisions)
  38. MIPAV Help‏‎ (42 revisions)
  39. Data Upload module‏‎ (40 revisions)
  40. Opening and loading image files‏‎ (39 revisions)
  41. Shading Correction: Inhomogeneity N3 Correction‏‎ (38 revisions)
  42. MIPAV class‏‎ (37 revisions)
  43. DTI Color Display‏‎ (36 revisions)
  44. Writing MIPAV plugins without access to MIPAV source code‏‎ (36 revisions - redirect page)
  45. Calculating VOI statistics‏‎ (36 revisions)
  46. Manual 2D Series‏‎ (35 revisions)
  47. Delineating volumes of interest (VOIs)‏‎ (34 revisions)
  48. Matrix, Plot, LUT, VOI and Surface files‏‎ (34 revisions)
  49. FAQ: Understanding Image Basics‏‎ (34 revisions)
  50. Hough Transform‏‎ (33 revisions)
  51. Fast Fourier Transformation (FFT)‏‎ (32 revisions)
  52. Sending and retrieving DICOM images‏‎ (32 revisions)
  53. Developing plug-in programs‏‎ (31 revisions)
  54. Data Repository tools‏‎ (31 revisions)
  55. Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency‏‎ (28 revisions)
  56. Segmenting Images Using Contours and Masks: Using contours to segment a VOI‏‎ (28 revisions)
  57. MIPAV change list‏‎ (28 revisions)
  58. Volume Renderer‏‎ (28 revisions)
  59. Displaying MIPAV Toolbars‏‎ (28 revisions)
  60. Saving and printing images‏‎ (28 revisions)
  61. MIPAV configuration files‏‎ (25 revisions)
  62. Technical Support‏‎ (24 revisions)
  63. Visualizing Images: Displaying images using the lightbox view‏‎ (24 revisions)
  64. DICOM Conformance‏‎ (24 revisions)
  65. NEIRetinalRegistration‏‎ (23 revisions)
  66. Browsing DICOM images‏‎ (23 revisions)
  67. Calculating statistics on VOI groups‏‎ (23 revisions)
  68. Working with DICOM Images‏‎ (21 revisions)
  69. Visualizing Images‏‎ (20 revisions)
  70. Visualizing Images: Displaying images using the triplanar-dual view‏‎ (20 revisions)
  71. FAQ: Customizing MIPAV‏‎ (19 revisions)
  72. Edge Detection: Zero X Laplacian‏‎ (19 revisions)
  73. Examples‏‎ (19 revisions)
  74. Data Download module‏‎ (19 revisions)
  75. To show the splash screen‏‎ (18 revisions)
  76. Quitting MIPAV‏‎ (18 revisions)
  77. Modifying Contours‏‎ (18 revisions)
  78. Analyzing Images‏‎ (18 revisions)
  79. Autocovariance Coefficients‏‎ (18 revisions)
  80. Microscopy: FRAP (Fluorescence Recovery After Photobleaching)‏‎ (18 revisions)
  81. Face Anonymizer (BET)‏‎ (18 revisions)
  82. Muscle Segmentation problems at UCSD‏‎ (18 revisions)
  83. 4 D tools‏‎ (17 revisions)
  84. BSpline registration: Detecting folding‏‎ (17 revisions)
  85. ImageJ‏‎ (17 revisions)
  86. Visualizing Images: Displaying images using the animate view‏‎ (16 revisions)
  87. Image Calculator: Advanced image calculator options‏‎ (16 revisions)
  88. DTI Pipeline Tutorials‏‎ (15 revisions)
  89. Using the API documentation‏‎ (15 revisions)
  90. Filters (Spatial): Coherence-Enhancing Diffusion‏‎ (15 revisions)
  91. Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs‏‎ (15 revisions)
  92. Converting non-DICOM image files to DICOM format‏‎ (15 revisions)
  93. Slice tools‏‎ (15 revisions)
  94. Correcting image spacing‏‎ (15 revisions)
  95. Extract Surface (Marching Cubes)‏‎ (15 revisions)
  96. B-Spline Automatic Registration Dialog box‏‎ (14 revisions)
  97. Fuzzy C-Means: Multispectral and Single Channel Algorithms‏‎ (14 revisions)
  98. Microscopy: Blind Deconvolution‏‎ (14 revisions)
  99. Segmenting Images Using Contours and Masks: Generating Masks‏‎ (13 revisions)
  100. Developing Plugin Programs‏‎ (13 revisions)
  101. Edge Detection: Zero X Non-Maximum Suppression‏‎ (13 revisions)
  102. Image Calculator‏‎ (13 revisions)
  103. FAQ: Trimming VOIs‏‎ (13 revisions)
  104. Converting image datasets to different data types‏‎ (13 revisions)
  105. Autocorrelation Coefficients‏‎ (13 revisions)
  106. Understanding MIPAV capabilities‏‎ (13 revisions)
  107. Segmenting Images Using Contours and Masks‏‎ (13 revisions)
  108. Changing the legends for functions‏‎ (12 revisions)
  109. Inserting slices into image datasets‏‎ (12 revisions)
  110. Visualizing Images: Displaying images using the triplanar view‏‎ (12 revisions)
  111. Filters (Spatial): Adaptive Noise Reduction‏‎ (12 revisions)
  112. Developing new tools using the API‏‎ (12 revisions)
  113. Cumulative Histogram‏‎ (12 revisions)
  114. Preface‏‎ (12 revisions)
  115. Extract Brain: Extract Brain Surface (BET)‏‎ (12 revisions)
  116. Changing Image Datasets Using MIPAV Utilities‏‎ (12 revisions)
  117. Histogram Equalization: Neighborhood Adaptive‏‎ (11 revisions)
  118. Creating a mask using the Paint Grow Segmentation method‏‎ (11 revisions)
  119. Microscopy Colocalization Orthogonal Regression‏‎ (11 revisions)
  120. Barrel Distortion Correction‏‎ (11 revisions)
  121. Volume 1, Basics‏‎ (11 revisions)
  122. Glossary for MIPAV Help‏‎ (11 revisions)
  123. Extract Brain: Extract Brain Surface (BSE)‏‎ (11 revisions)
  124. Visualizing Images: Displaying images using the surface plotter view‏‎ (11 revisions)
  125. MIPAV FAQ‏‎ (10 revisions)
  126. Installing‏‎ (10 revisions)
  127. Connecting to SRB BIRN‏‎ (10 revisions)
  128. Examples of BSpline registration‏‎ (10 revisions)
  129. Volume renderer GPU support listing‏‎ (10 revisions)
  130. Protecting patient privacy using Anonymize‏‎ (10 revisions)
  131. Filters (Spatial) Anisotropic Diffusion‏‎ (10 revisions)
  132. PlugInDialogCT MD.java‏‎ (10 revisions)
  133. Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools‏‎ (9 revisions)
  134. Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor‏‎ (9 revisions)
  135. Visualizing Images:Displaying images using the default view: Magnifying and minifying images‏‎ (9 revisions)
  136. Midsagittal line alignment‏‎ (9 revisions)
  137. MIPAV mailing list‏‎ (9 revisions)
  138. Transform to power of 2‏‎ (9 revisions)
  139. Filters (Spatial): Adaptive Path Smooth‏‎ (9 revisions)
  140. Posing queries and retrieving images‏‎ (9 revisions)
  141. Plug-in CT MD, a typical plug-in program‏‎ (9 revisions)
  142. Image Calculator: OR‏‎ (9 revisions)
  143. Understanding plug-in programs‏‎ (9 revisions)
  144. Recording scripts‏‎ (8 revisions)
  145. Subtract VOI Background‏‎ (8 revisions)
  146. Masking (filling) images‏‎ (8 revisions)
  147. Flipping images‏‎ (8 revisions)
  148. Running scripts‏‎ (8 revisions)
  149. Matching images‏‎ (8 revisions)
  150. Cropping images‏‎ (8 revisions)
  151. Modifying image resolutions‏‎ (8 revisions)
  152. Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion‏‎ (8 revisions)
  153. FAQ: Understanding Changes in MIPAV‏‎ (8 revisions)
  154. Visualizing Images: Displaying images using the default view: Viewing two images together‏‎ (8 revisions)
  155. Watershed‏‎ (8 revisions)
  156. Getting Started with Eclipse‏‎ (8 revisions)
  157. Scope of this guide‏‎ (8 revisions)
  158. Customizing the appearance of graphs - Modify graph dialog box‏‎ (8 revisions)
  159. Filters (Spatial) Laplacian‏‎ (8 revisions)
  160. Degrees of freedom‏‎ (8 revisions)
  161. Standard tasks provided through commands on the Utilities menu‏‎ (7 revisions)
  162. How to specify the location of a plugin in the MIPAV menu‏‎ (7 revisions)
  163. Histogram Equalization: Regional Adaptive‏‎ (7 revisions)
  164. Creating a self-contained plug-in frame‏‎ (7 revisions)
  165. Background‏‎ (7 revisions)
  166. Filters (Frequency)‏‎ (7 revisions)
  167. Histogram Matching‏‎ (7 revisions)
  168. Adding noise to images‏‎ (7 revisions)
  169. Filters (Spatial): Nonlinear Noise Reduction‏‎ (7 revisions)
  170. Visualizing Images: Displaying images using the default view‏‎ (7 revisions)
  171. Registration: Landmark-Least Squares‏‎ (7 revisions)
  172. Conventions used in this guide‏‎ (7 revisions)
  173. Technical Information‏‎ (7 revisions)
  174. Displaying and editing DICOM tag information‏‎ (7 revisions)
  175. Testing the connection‏‎ (7 revisions)
  176. Introduction‏‎ (7 revisions)
  177. Filters (Spatial): Local Normalization‏‎ (7 revisions)
  178. Task 2, Applying Talairach VOIs‏‎ (6 revisions)
  179. Eclipse installation and configuration documentation‏‎ (6 revisions)
  180. Filters (Wavelet): De-noising BLS GSM‏‎ (6 revisions)
  181. Receiving and sending image files‏‎ (6 revisions)
  182. Adding image margins‏‎ (6 revisions)
  183. Rotating images‏‎ (6 revisions)
  184. MIPAV feature list‏‎ (6 revisions)
  185. Using Shell scripting to lessen typing‏‎ (6 revisions)
  186. Select Algorithms and Brain Tools for Talairach Transform‏‎ (6 revisions)
  187. Transformation matrix‏‎ (6 revisions)
  188. Planning scripts‏‎ (6 revisions)
  189. Registration: Landmark-TPSpline‏‎ (6 revisions)
  190. Filters (Spatial): Gaussian Blur‏‎ (6 revisions)
  191. Filters (Spatial): Slice Averaging‏‎ (6 revisions)
  192. Filters (Spatial): Unsharp Mask‏‎ (6 revisions)
  193. Muscle Segmentation‏‎ (6 revisions)
  194. Quantify Mask‏‎ (6 revisions)
  195. Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system‏‎ (6 revisions)
  196. PlugIn Algorithm Median‏‎ (5 revisions)
  197. Filters (Spatial): Mean‏‎ (5 revisions)
  198. Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints‏‎ (5 revisions)
  199. FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)?‏‎ (5 revisions)
  200. Filters (Spatial): Median‏‎ (5 revisions)
  201. FAQ: How can I view the debugging output of MIPAV?‏‎ (5 revisions)
  202. Filters (Wavelet): Thresholding‏‎ (5 revisions)
  203. Using Scripts (Macros) in MIPAV‏‎ (5 revisions)
  204. Developing and using scripts‏‎ (5 revisions)
  205. Histogram summary‏‎ (5 revisions)
  206. Sample images‏‎ (5 revisions)
  207. Filters (Spatial): Nonmaximum Suppression‏‎ (5 revisions)
  208. Generating graphs‏‎ (5 revisions)
  209. Using the mipav command‏‎ (5 revisions)
  210. Supported file formats‏‎ (5 revisions)
  211. Examples of MIPAV plug-ins‏‎ (5 revisions)
  212. Plug-in CT MD.java‏‎ (5 revisions)
  213. PlugInAlgorithmCT MD.java‏‎ (5 revisions)
  214. Replacing pixel/voxel value in images‏‎ (5 revisions)
  215. 2D Histogram‏‎ (5 revisions)
  216. TRE Scripts‏‎ (5 revisions)
  217. Threshold‏‎ (5 revisions)
  218. Visualizing Images: Displaying images using the surface renderer view‏‎ (4 revisions)
  219. PlugIn Algorithm Median (con't)‏‎ (4 revisions)
  220. Subsampling images‏‎ (4 revisions)
  221. Task 3, Segmenting the original image‏‎ (4 revisions)
  222. FAQ: How do I setup and use Active stereo display in MIPAV?‏‎ (4 revisions)
  223. Editing and deleting scripts‏‎ (4 revisions)
  224. Volume 2, Algorithms‏‎ (4 revisions)
  225. References‏‎ (4 revisions)
  226. Task 6, Calculating statistics on VOIs‏‎ (4 revisions)
  227. Setting up scripting‏‎ (4 revisions)
  228. Filters (Spatial): Gradient Magnitude‏‎ (4 revisions)
  229. Image Math‏‎ (4 revisions)
  230. Making a MIPAV Algorithm JISTable‏‎ (4 revisions)
  231. Maximum Intensity Projection‏‎ (4 revisions)
  232. Calculating the volume of masks‏‎ (4 revisions)
  233. Where to find more information‏‎ (4 revisions)
  234. MuscleSegmentation plugin‏‎ (4 revisions)
  235. Registration: Time Series Optimized Automatic Registration‏‎ (4 revisions)
  236. Visualizing Images: Displaying images using the link to another image view‏‎ (4 revisions)
  237. Who should use this guide‏‎ (4 revisions)
  238. Histogram‏‎ (4 revisions)
  239. Segmenting Images Using Contours and Masks:Converting VOI contours to masks‏‎ (4 revisions)
  240. Standard Deviation Threshold‏‎ (4 revisions)
  241. Reslice-Isotropic Voxels‏‎ (4 revisions)
  242. Mapping Brains in Talairach Space‏‎ (3 revisions)
  243. How to specify the script name of a plugin‏‎ (3 revisions)
  244. Mask‏‎ (3 revisions)
  245. DTI Estimate tensor‏‎ (3 revisions)
  246. Filters (Spatial): Mode‏‎ (3 revisions)
  247. Recording utilities usage with the history feature‏‎ (3 revisions)
  248. MIPAV Script Running‏‎ (3 revisions)
  249. Task 5, Copying Talairach VOIs to segmented images‏‎ (3 revisions)
  250. PlugIn Algorithm Median (con't, part 4)‏‎ (3 revisions)

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