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- Customizing the appearance of graphs - Modify graph dialog box (20:49, 21 February 2012)
- Changing the legends for functions (21:21, 21 February 2012)
- Developing and using scripts (21:54, 21 February 2012)
- Setting up scripting (21:59, 21 February 2012)
- Planning scripts (22:09, 21 February 2012)
- Recording scripts (22:22, 21 February 2012)
- Building and compiling plug-in programs (15:52, 22 February 2012)
- Recording utilities usage with the history feature (17:29, 22 February 2012)
- Standard tasks provided through commands on the Utilities menu (17:29, 22 February 2012)
- Adding image margins (18:06, 22 February 2012)
- Copying images using the Clone command (18:07, 22 February 2012)
- Image Calculator: OR (19:14, 22 February 2012)
- Inverting the image (19:24, 22 February 2012)
- Maximum Intensity Projection (19:35, 22 February 2012)
- Pad (19:43, 22 February 2012)
- Rotating images (20:10, 22 February 2012)
- Editing and deleting scripts (20:44, 22 February 2012)
- Examples (21:04, 22 February 2012)
- Combining scripts and other programs (21:06, 22 February 2012)
- Using Shell scripting to lessen typing (21:18, 22 February 2012)
- Glossary for MIPAV Help (17:47, 23 February 2012)
- Background (16:39, 7 March 2012)
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system (17:54, 7 March 2012)
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image (19:09, 7 March 2012)
- Task 5, Copying Talairach VOIs to segmented images (19:14, 7 March 2012)
- Task 6, Calculating statistics on VOIs (19:38, 7 March 2012)
- Viewing the Talairach grid on Talairach images (19:42, 7 March 2012)
- Who should use this guide (13:42, 9 March 2012)
- Skills you need to perform tasks in MIPAV (13:43, 9 March 2012)
- How this guide is organized (13:44, 9 March 2012)
- Volume 1, Basics (13:44, 9 March 2012)
- Where to find more information (13:46, 9 March 2012)
- Volume 2, Algorithms (13:46, 9 March 2012)
- Conventions used in this guide (13:47, 9 March 2012)
- Viewing MIPAV news and updates (16:33, 16 March 2012)
- Scope of this guide (15:51, 22 March 2012)
- Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs (13:30, 26 March 2012)
- Matrix, Plot, LUT, VOI and Surface files (15:28, 27 March 2012)
- B-Spline Automatic Registration Dialog box (17:16, 11 April 2012)
- BSpline registration: Detecting folding (18:39, 11 April 2012)
- Saving a history of actions on images (13:12, 23 April 2012)
- The SRB tab of the MIPAV options dialog box (13:53, 24 April 2012)
- MIPAV mailing list (18:30, 25 April 2012)
- Quitting MIPAV (18:34, 25 April 2012)
- Allocating Memory in MIPAV (18:38, 25 April 2012)
- MIPAV toolbars (18:57, 25 April 2012)
- Displaying images (19:02, 25 April 2012)
- Modifying image resolutions (19:08, 25 April 2012)
- Creating new images (19:24, 25 April 2012)
- Saving and printing images (19:35, 25 April 2012)
- To show the splash screen (19:36, 25 April 2012)
- Calculating statistics on VOI groups (13:13, 26 April 2012)
- Reviewing VOI statistics (13:18, 26 April 2012)
- ImageJ (13:20, 26 April 2012)
- Calculating VOI statistics (13:30, 26 April 2012)
- Displaying MIPAV Toolbars (13:44, 26 April 2012)
- FAQ: Customizing MIPAV (14:43, 26 April 2012)
- FAQ: Understanding Image Basics (15:15, 26 April 2012)
- MIPAV configuration files (15:20, 26 April 2012)
- FAQ: Understanding Changes in MIPAV (12:41, 30 April 2012)
- FAQ: Trimming VOIs (12:42, 30 April 2012)
- Understanding Image Basics (15:36, 7 May 2012)
- B-Spline Automatic Registration (18:14, 9 May 2012)
- Fast Fourier Transformation (FFT) (13:15, 10 May 2012)
- Extract Surface (Marching Cubes) (19:10, 11 May 2012)
- Mosaic Registration (19:11, 14 May 2012)
- FAQ: Understanding Memory (17:32, 18 May 2012)
- Understanding MIPAV capabilities (18:05, 18 May 2012)
- Developing new tools using the API (18:06, 18 May 2012)
- Using MIPAV Algorithms (18:06, 18 May 2012)
- Cost functions used in MIPAV algorithms (18:07, 18 May 2012)
- Degrees of freedom (18:07, 18 May 2012)
- DTI Color Display (18:09, 18 May 2012)
- DTI Estimate tensor (18:09, 18 May 2012)
- Edge Detection: Zero X Laplacian (18:10, 18 May 2012)
- Edge Detection: Zero X Non-Maximum Suppression (18:10, 18 May 2012)
- Face Anonymizer (BET) (18:13, 18 May 2012)
- Filters (Spatial): Adaptive Noise Reduction (18:14, 18 May 2012)
- Filters (Frequency) (18:15, 18 May 2012)
- Filters (Spatial): Adaptive Path Smooth (18:15, 18 May 2012)
- Filters (Spatial): Gaussian Blur (18:17, 18 May 2012)
- Filters (Spatial): Gradient Magnitude (18:18, 18 May 2012)
- Filters (Spatial): Haralick Texture (18:22, 18 May 2012)
- Filters (Spatial): Mean (18:25, 18 May 2012)
- Filters (Spatial): Mode (18:26, 18 May 2012)
- Fuzzy C-Means: Multispectral and Single Channel Algorithms (18:31, 18 May 2012)
- Histogram Matching (18:32, 18 May 2012)
- 2D Histogram (18:32, 18 May 2012)
- Histogram summary (18:32, 18 May 2012)
- Image Calculator (18:33, 18 May 2012)
- Manual 2D Series (18:33, 18 May 2012)
- Mask (18:33, 18 May 2012)
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor (18:34, 18 May 2012)
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching) (18:34, 18 May 2012)
- Microscopy: Blind Deconvolution (18:35, 18 May 2012)
- Midsagittal line alignment (18:35, 18 May 2012)
- Reslice-Isotropic Voxels (18:37, 18 May 2012)
- Standard Deviation Threshold (18:37, 18 May 2012)
- Subsampling images (18:37, 18 May 2012)
- Registration: Landmark-Least Squares (18:42, 18 May 2012)
- Registration: Landmark-TPSpline (18:43, 18 May 2012)
- Registration: Time Series Optimized Automatic Registration (18:46, 18 May 2012)
- DTI Pipeline (16:43, 29 May 2012)
- DTI Pipeline Tutorials (18:39, 31 May 2012)
- Installing mipav (15:39, 12 June 2012)
- Wiki help testing (15:42, 12 June 2012)
- DTI pipeline interface (16:35, 12 June 2012)
- Video tutorials (19:22, 13 June 2012)
- Volume renderer GPU support listing (19:31, 13 June 2012)
- FAQ: How can I view the debugging output of MIPAV? (19:39, 13 June 2012)
- FAQ: How do I setup and use Active stereo display in MIPAV? (19:41, 13 June 2012)
- FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)? (19:42, 13 June 2012)
- Algorithms used to draw VOI (19:56, 13 June 2012)
- How to specify the location of a plugin in the MIPAV menu (20:19, 13 June 2012)
- Mapping Brains in Talairach Space (15:37, 15 June 2012)
- Introduction (15:48, 15 June 2012)
- Installing (15:49, 15 June 2012)
- Select Algorithms and Brain Tools for Talairach Transform (16:01, 15 June 2012)
- Task 2, Applying Talairach VOIs (16:38, 15 June 2012)
- Task 3, Segmenting the original image (16:41, 15 June 2012)
- Sample images (18:55, 15 June 2012)
- Microscopy Colocalization Orthogonal Regression (19:01, 10 July 2012)
- Registration: Manual 2D Series (19:51, 11 July 2012)
- Histogram Equalization: Regional Adaptive (20:10, 20 July 2012)
- Histogram Equalization: Neighborhood Adaptive (20:16, 20 July 2012)
- Filters (Spatial) Anisotropic Diffusion (20:21, 20 July 2012)
- Extract Brain: Extract Brain Surface (BSE) (20:48, 20 July 2012)
- Cropping images (20:54, 24 July 2012)
- DICOM Conformance (12:33, 26 July 2012)
- Working with DICOM Images (13:05, 26 July 2012)
- Browsing DICOM images (13:06, 26 July 2012)
- Sending and retrieving DICOM images (13:07, 26 July 2012)
- Testing the connection (13:08, 26 July 2012)
- Posing queries and retrieving images (13:08, 26 July 2012)
- Receiving and sending image files (13:10, 26 July 2012)
- Displaying and editing DICOM tag information (13:11, 26 July 2012)
- Protecting patient privacy using Anonymize (13:12, 26 July 2012)
- Filters (Spatial): Slice Averaging (18:43, 27 July 2012)
- Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency (16:53, 31 July 2012)
- Watershed (14:07, 6 August 2012)
- Morphology (14:13, 6 August 2012)
- Examples of BSpline registration (11:56, 7 August 2012)
- Histogram Cumulative (15:13, 7 August 2012)
- Quantify Mask (13:00, 9 August 2012)
- Image Math (13:04, 9 August 2012)
- Matching images (13:08, 9 August 2012)
- Masking (filling) images (13:39, 9 August 2012)
- Replacing pixel/voxel value in images (13:49, 9 August 2012)
- Using Scripts (Macros) in MIPAV (14:00, 9 August 2012)
- Converting non-DICOM image files to DICOM format (16:04, 9 August 2012)
- Running scripts (16:45, 9 August 2012)
- Adding noise to images (16:53, 9 August 2012)
- Filters (Spatial) Laplacian (17:20, 9 August 2012)
- Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools (19:42, 9 August 2012)
- Segmenting Images Using Contours and Masks (19:44, 9 August 2012)
- Subtract VOI Background (19:47, 9 August 2012)
- Why can't I see the plugins I install in the menu? (12:11, 13 August 2012)
- Shading Correction: Inhomogeneity N3 Correction (14:09, 13 August 2012)
- Filters (Spatial): Nonmaximum Suppression (14:49, 21 August 2012)
- Converting image datasets to different data types (12:07, 22 August 2012)
- Filters (Wavelet): Thresholding (12:18, 22 August 2012)
- NEIRetinalRegistration (13:06, 28 August 2012)
- 4 D tools (19:11, 5 September 2012)
- Inserting slices into image datasets (16:28, 18 September 2012)
- Changing Image Datasets Using MIPAV Utilities (18:29, 18 September 2012)
- Swap slices and swap volumes (15:19, 19 September 2012)
- Slice tools (15:21, 19 September 2012)
- Flipping images (20:06, 21 September 2012)
- Map IDs (19:39, 26 September 2012)
- Histogram (14:31, 3 October 2012)
- Transformation matrix (12:35, 24 October 2012)
- Optimized automatic registration 3D (16:34, 2 November 2012)
- Transform nonlinear (17:39, 7 November 2012)
- Load and save profile (18:10, 7 November 2012)
- Contributing code to MIPAV (21:46, 4 December 2012)
- Main Page (21:48, 4 December 2012)
- Transform to power of 2 (15:27, 2 January 2013)
- Segmenting Images Using Contours and Masks: Using contours to segment a VOI (21:00, 20 February 2013)
- Introducing MIPAV (12:52, 11 March 2013)
- Using the mipav command (16:19, 12 March 2013)
- Image Calculator: Advanced image calculator options (19:34, 27 March 2013)
- Filters (Spatial): Median (19:38, 27 March 2013)
- Threshold (19:43, 28 March 2013)
- Supported file formats (18:18, 29 March 2013)
- Prostate segmentation and surface reconstruction (19:27, 2 April 2013)
- MIPAV change list 5.x.x (20:42, 5 April 2013)
- MIPAV change list (16:08, 8 April 2013)
- MIPAV feature list (15:11, 25 April 2013)
- Autocorrelation Coefficients (15:16, 25 April 2013)
- Autocovariance Coefficients (15:17, 25 April 2013)
- Transform: Conformal Mapping Algorithms (15:18, 25 April 2013)
- Hough Transform (15:18, 25 April 2013)
- Filters (Wavelet): De-noising BLS GSM (15:19, 25 April 2013)
- Cumulative Histogram (15:19, 25 April 2013)
- Muscle Segmentation (15:19, 25 April 2013)
- DTI: Create List File (15:50, 25 April 2013)
- Transform (15:51, 25 April 2013)
- Correcting image spacing (14:17, 7 May 2013)
- Filters (Spatial): Nonlinear Noise Reduction (19:01, 8 May 2013)
- Customizing MIPAV (20:34, 8 May 2013)
- Filters (Spatial): Coherence-Enhancing Diffusion (20:11, 15 May 2013)
- MIPAV FAQ (16:32, 22 May 2013)
- FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux? (16:37, 22 May 2013)
- Filters (Spatial): Unsharp Mask (18:38, 24 May 2013)
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion (18:44, 24 May 2013)
- Filters (Spatial): Local Normalization (18:57, 24 May 2013)
- Supported Formats (19:13, 24 May 2013)
- Visualizing Images: Displaying images using the surface renderer view (14:19, 17 June 2013)
- MIPAV system requirements (17:00, 18 June 2013)
- MIPAV class (19:06, 18 June 2013)
- Volume Renderer (19:13, 18 June 2013)
- Using the API documentation (12:04, 24 June 2013)
- Developing Plugin Programs (12:08, 24 June 2013)
- Installing a plug-in (12:08, 24 June 2013)
- Developing plug-in programs (12:09, 24 June 2013)
- Creating a self-contained plug-in frame (12:10, 24 June 2013)
- Examples of MIPAV plug-ins (12:10, 24 June 2013)
- Plug-in CT MD, a typical plug-in program (12:11, 24 June 2013)
- PlugInAlgorithmCT MD.java (12:12, 24 June 2013)
- Plug-in CT MD.java (12:12, 24 June 2013)
- Understanding plug-in programs (12:14, 24 June 2013)
- Changing Image Contrast (15:58, 12 July 2013)
- Opening and loading image files (14:15, 19 July 2013)
- Data Repository tools (17:27, 26 July 2013)
- Data Upload module (13:04, 29 July 2013)
- Data Download module (18:48, 29 July 2013)
- Data Validation module (20:40, 21 August 2013)
- Filters (Spatial): Kernel Regression (20:41, 21 August 2013)
- Delineating volumes of interest (VOIs) (15:33, 22 August 2013)
- Using MIPAV for astronomical image processing (15:37, 22 August 2013)
- Image submission plug-in (13:05, 5 September 2013)
- MIPAV Help (19:26, 10 September 2013)
- Supported algorithms (19:27, 10 September 2013)
- Barrel Distortion Correction (20:13, 10 September 2013)
- Image formats descriptions (16:40, 13 January 2014)
- Extract Brain: Extract Brain Surface (BET) (15:47, 15 January 2014)
- Automatic de-Skulling (20:05, 6 February 2014)
- Interpolation methods used in MIPAV (15:45, 18 March 2014)
- Publications (20:26, 10 November 2014)
- Getting Started Quickly with MIPAV (14:33, 4 June 2015)
- How to specify the script name of a plugin (15:23, 29 March 2016)
- MuscleSegmentation plugin (15:52, 29 March 2016)
- Writing MIPAV plugins without MIPAV source code (19:27, 12 April 2022)
- Technical Support (19:29, 12 April 2022)
