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  1. Documentation of MIPAV contributions by Geometric Tools‏‎ (21:22, 26 January 2007)
  2. Subversion topics‏‎ (17:23, 7 April 2008)
  3. Crontab notes‏‎ (18:15, 16 October 2008)
  4. Supported utilities‏‎ (18:31, 23 March 2009)
  5. VOIs‏‎ (19:28, 23 March 2009)
  6. Image overlays and composites‏‎ (20:03, 23 March 2009)
  7. 3-D Surface Views‏‎ (20:14, 23 March 2009)
  8. MIPAV change list 3.x.x‏‎ (18:42, 25 March 2009)
  9. MIPAV change list 2.x‏‎ (18:43, 25 March 2009)
  10. MIPAV change list 1.xx‏‎ (18:43, 25 March 2009)
  11. Eclipse installation and configuration documentation‏‎ (20:48, 21 January 2010)
  12. MIPAV Script Running‏‎ (19:59, 14 May 2010)
  13. MIPAV Script Recording‏‎ (20:00, 14 May 2010)
  14. Making a MIPAV Algorithm Scriptable‏‎ (16:44, 24 May 2010)
  15. Making a MIPAV Algorithm JISTable‏‎ (20:43, 24 May 2010)
  16. Muscle Segmentation problems at UCSD‏‎ (17:57, 28 June 2010)
  17. TRE Scripts‏‎ (17:59, 28 June 2010)
  18. MIPAV change list 4.x.x‏‎ (18:52, 20 July 2010)
  19. Getting Started with Eclipse‏‎ (14:42, 26 May 2011)
  20. Figure 1‏‎ (14:10, 31 January 2012)
  21. MIPAV change list pre-1.0‏‎ (20:32, 31 January 2012)
  22. Preface‏‎ (21:18, 10 February 2012)
  23. PlugInDialogCT MD.java‏‎ (22:48, 15 February 2012)
  24. References‏‎ (23:45, 15 February 2012)
  25. Technical Information‏‎ (14:39, 16 February 2012)
  26. PlugIn Algorithm Median (con't, part 3)‏‎ (14:55, 16 February 2012)
  27. PlugIn Algorithm Median (con't, part 4)‏‎ (14:56, 16 February 2012)
  28. PlugIn Algorithm Median (con't)‏‎ (15:05, 16 February 2012)
  29. PlugIn Algorithm Median‏‎ (15:05, 16 February 2012)
  30. PlugIn Algorithm Median (con't, part 2)‏‎ (15:06, 16 February 2012)
  31. Connecting to SRB BIRN‏‎ (19:15, 17 February 2012)
  32. Visualizing Images‏‎ (19:26, 17 February 2012)
  33. Visualizing Images: Displaying images using the default view‏‎ (19:29, 17 February 2012)
  34. Visualizing Images:Displaying images using the default view: Magnifying and minifying images‏‎ (19:57, 17 February 2012)
  35. Visualizing Images: Displaying images using the default view: Viewing two images together‏‎ (20:10, 17 February 2012)
  36. Visualizing Images: Displaying images using the animate view‏‎ (14:15, 21 February 2012)
  37. Visualizing Images: Displaying images using the cine (movie) view‏‎ (14:16, 21 February 2012)
  38. Visualizing Images: Displaying images using the lightbox view‏‎ (14:46, 21 February 2012)
  39. Visualizing Images: Displaying images using the link to another image view‏‎ (14:50, 21 February 2012)
  40. Visualizing Images: Displaying images using the triplanar view‏‎ (15:00, 21 February 2012)
  41. Visualizing Images: Displaying images using the triplanar-dual view‏‎ (15:33, 21 February 2012)
  42. Visualizing Images: Displaying images using the surface plotter view‏‎ (15:56, 21 February 2012)
  43. Modifying Contours‏‎ (17:42, 21 February 2012)
  44. Segmenting Images Using Contours and Masks: Generating Masks‏‎ (18:11, 21 February 2012)
  45. Creating a mask using the Paint Grow Segmentation method‏‎ (18:27, 21 February 2012)
  46. Segmenting Images Using Contours and Masks:Converting VOI contours to masks‏‎ (18:32, 21 February 2012)
  47. Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints‏‎ (18:54, 21 February 2012)
  48. Analyzing Images‏‎ (19:23, 21 February 2012)
  49. Calculating the volume of masks‏‎ (19:51, 21 February 2012)
  50. Generating graphs‏‎ (20:22, 21 February 2012)
  51. Customizing the appearance of graphs - Modify graph dialog box‏‎ (20:49, 21 February 2012)
  52. Changing the legends for functions‏‎ (21:21, 21 February 2012)
  53. Developing and using scripts‏‎ (21:54, 21 February 2012)
  54. Setting up scripting‏‎ (21:59, 21 February 2012)
  55. Planning scripts‏‎ (22:09, 21 February 2012)
  56. Recording scripts‏‎ (22:22, 21 February 2012)
  57. Building and compiling plug-in programs‏‎ (15:52, 22 February 2012)
  58. Recording utilities usage with the history feature‏‎ (17:29, 22 February 2012)
  59. Standard tasks provided through commands on the Utilities menu‏‎ (17:29, 22 February 2012)
  60. Adding image margins‏‎ (18:06, 22 February 2012)
  61. Copying images using the Clone command‏‎ (18:07, 22 February 2012)
  62. Image Calculator: OR‏‎ (19:14, 22 February 2012)
  63. Inverting the image‏‎ (19:24, 22 February 2012)
  64. Maximum Intensity Projection‏‎ (19:35, 22 February 2012)
  65. Pad‏‎ (19:43, 22 February 2012)
  66. Rotating images‏‎ (20:10, 22 February 2012)
  67. Editing and deleting scripts‏‎ (20:44, 22 February 2012)
  68. Examples‏‎ (21:04, 22 February 2012)
  69. Combining scripts and other programs‏‎ (21:06, 22 February 2012)
  70. Using Shell scripting to lessen typing‏‎ (21:18, 22 February 2012)
  71. Glossary for MIPAV Help‏‎ (17:47, 23 February 2012)
  72. Background‏‎ (16:39, 7 March 2012)
  73. Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system‏‎ (17:54, 7 March 2012)
  74. Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image‏‎ (19:09, 7 March 2012)
  75. Task 5, Copying Talairach VOIs to segmented images‏‎ (19:14, 7 March 2012)
  76. Task 6, Calculating statistics on VOIs‏‎ (19:38, 7 March 2012)
  77. Viewing the Talairach grid on Talairach images‏‎ (19:42, 7 March 2012)
  78. Who should use this guide‏‎ (13:42, 9 March 2012)
  79. Skills you need to perform tasks in MIPAV‏‎ (13:43, 9 March 2012)
  80. How this guide is organized‏‎ (13:44, 9 March 2012)
  81. Volume 1, Basics‏‎ (13:44, 9 March 2012)
  82. Where to find more information‏‎ (13:46, 9 March 2012)
  83. Volume 2, Algorithms‏‎ (13:46, 9 March 2012)
  84. Conventions used in this guide‏‎ (13:47, 9 March 2012)
  85. Viewing MIPAV news and updates‏‎ (16:33, 16 March 2012)
  86. Scope of this guide‏‎ (15:51, 22 March 2012)
  87. Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs‏‎ (13:30, 26 March 2012)
  88. Matrix, Plot, LUT, VOI and Surface files‏‎ (15:28, 27 March 2012)
  89. B-Spline Automatic Registration Dialog box‏‎ (17:16, 11 April 2012)
  90. BSpline registration: Detecting folding‏‎ (18:39, 11 April 2012)
  91. Saving a history of actions on images‏‎ (13:12, 23 April 2012)
  92. The SRB tab of the MIPAV options dialog box‏‎ (13:53, 24 April 2012)
  93. MIPAV mailing list‏‎ (18:30, 25 April 2012)
  94. Quitting MIPAV‏‎ (18:34, 25 April 2012)
  95. Allocating Memory in MIPAV‏‎ (18:38, 25 April 2012)
  96. MIPAV toolbars‏‎ (18:57, 25 April 2012)
  97. Displaying images‏‎ (19:02, 25 April 2012)
  98. Modifying image resolutions‏‎ (19:08, 25 April 2012)
  99. Creating new images‏‎ (19:24, 25 April 2012)
  100. Saving and printing images‏‎ (19:35, 25 April 2012)
  101. To show the splash screen‏‎ (19:36, 25 April 2012)
  102. Calculating statistics on VOI groups‏‎ (13:13, 26 April 2012)
  103. Reviewing VOI statistics‏‎ (13:18, 26 April 2012)
  104. ImageJ‏‎ (13:20, 26 April 2012)
  105. Calculating VOI statistics‏‎ (13:30, 26 April 2012)
  106. Displaying MIPAV Toolbars‏‎ (13:44, 26 April 2012)
  107. FAQ: Customizing MIPAV‏‎ (14:43, 26 April 2012)
  108. FAQ: Understanding Image Basics‏‎ (15:15, 26 April 2012)
  109. MIPAV configuration files‏‎ (15:20, 26 April 2012)
  110. FAQ: Understanding Changes in MIPAV‏‎ (12:41, 30 April 2012)
  111. FAQ: Trimming VOIs‏‎ (12:42, 30 April 2012)
  112. Understanding Image Basics‏‎ (15:36, 7 May 2012)
  113. B-Spline Automatic Registration‏‎ (18:14, 9 May 2012)
  114. Fast Fourier Transformation (FFT)‏‎ (13:15, 10 May 2012)
  115. Extract Surface (Marching Cubes)‏‎ (19:10, 11 May 2012)
  116. Mosaic Registration‏‎ (19:11, 14 May 2012)
  117. FAQ: Understanding Memory‏‎ (17:32, 18 May 2012)
  118. Understanding MIPAV capabilities‏‎ (18:05, 18 May 2012)
  119. Developing new tools using the API‏‎ (18:06, 18 May 2012)
  120. Using MIPAV Algorithms‏‎ (18:06, 18 May 2012)
  121. Cost functions used in MIPAV algorithms‏‎ (18:07, 18 May 2012)
  122. Degrees of freedom‏‎ (18:07, 18 May 2012)
  123. DTI Color Display‏‎ (18:09, 18 May 2012)
  124. DTI Estimate tensor‏‎ (18:09, 18 May 2012)
  125. Edge Detection: Zero X Laplacian‏‎ (18:10, 18 May 2012)
  126. Edge Detection: Zero X Non-Maximum Suppression‏‎ (18:10, 18 May 2012)
  127. Face Anonymizer (BET)‏‎ (18:13, 18 May 2012)
  128. Filters (Spatial): Adaptive Noise Reduction‏‎ (18:14, 18 May 2012)
  129. Filters (Frequency)‏‎ (18:15, 18 May 2012)
  130. Filters (Spatial): Adaptive Path Smooth‏‎ (18:15, 18 May 2012)
  131. Filters (Spatial): Gaussian Blur‏‎ (18:17, 18 May 2012)
  132. Filters (Spatial): Gradient Magnitude‏‎ (18:18, 18 May 2012)
  133. Filters (Spatial): Haralick Texture‏‎ (18:22, 18 May 2012)
  134. Filters (Spatial): Mean‏‎ (18:25, 18 May 2012)
  135. Filters (Spatial): Mode‏‎ (18:26, 18 May 2012)
  136. Fuzzy C-Means: Multispectral and Single Channel Algorithms‏‎ (18:31, 18 May 2012)
  137. Histogram Matching‏‎ (18:32, 18 May 2012)
  138. 2D Histogram‏‎ (18:32, 18 May 2012)
  139. Histogram summary‏‎ (18:32, 18 May 2012)
  140. Image Calculator‏‎ (18:33, 18 May 2012)
  141. Manual 2D Series‏‎ (18:33, 18 May 2012)
  142. Mask‏‎ (18:33, 18 May 2012)
  143. Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor‏‎ (18:34, 18 May 2012)
  144. Microscopy: FRAP (Fluorescence Recovery After Photobleaching)‏‎ (18:34, 18 May 2012)
  145. Microscopy: Blind Deconvolution‏‎ (18:35, 18 May 2012)
  146. Midsagittal line alignment‏‎ (18:35, 18 May 2012)
  147. Reslice-Isotropic Voxels‏‎ (18:37, 18 May 2012)
  148. Standard Deviation Threshold‏‎ (18:37, 18 May 2012)
  149. Subsampling images‏‎ (18:37, 18 May 2012)
  150. Registration: Landmark-Least Squares‏‎ (18:42, 18 May 2012)
  151. Registration: Landmark-TPSpline‏‎ (18:43, 18 May 2012)
  152. Registration: Time Series Optimized Automatic Registration‏‎ (18:46, 18 May 2012)
  153. DTI Pipeline‏‎ (16:43, 29 May 2012)
  154. DTI Pipeline Tutorials‏‎ (18:39, 31 May 2012)
  155. Installing mipav‏‎ (15:39, 12 June 2012)
  156. Wiki help testing‏‎ (15:42, 12 June 2012)
  157. DTI pipeline interface‏‎ (16:35, 12 June 2012)
  158. Video tutorials‏‎ (19:22, 13 June 2012)
  159. Volume renderer GPU support listing‏‎ (19:31, 13 June 2012)
  160. FAQ: How can I view the debugging output of MIPAV?‏‎ (19:39, 13 June 2012)
  161. FAQ: How do I setup and use Active stereo display in MIPAV?‏‎ (19:41, 13 June 2012)
  162. FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)?‏‎ (19:42, 13 June 2012)
  163. Algorithms used to draw VOI‏‎ (19:56, 13 June 2012)
  164. How to specify the location of a plugin in the MIPAV menu‏‎ (20:19, 13 June 2012)
  165. Mapping Brains in Talairach Space‏‎ (15:37, 15 June 2012)
  166. Introduction‏‎ (15:48, 15 June 2012)
  167. Installing‏‎ (15:49, 15 June 2012)
  168. Select Algorithms and Brain Tools for Talairach Transform‏‎ (16:01, 15 June 2012)
  169. Task 2, Applying Talairach VOIs‏‎ (16:38, 15 June 2012)
  170. Task 3, Segmenting the original image‏‎ (16:41, 15 June 2012)
  171. Sample images‏‎ (18:55, 15 June 2012)
  172. Microscopy Colocalization Orthogonal Regression‏‎ (19:01, 10 July 2012)
  173. Registration: Manual 2D Series‏‎ (19:51, 11 July 2012)
  174. Histogram Equalization: Regional Adaptive‏‎ (20:10, 20 July 2012)
  175. Histogram Equalization: Neighborhood Adaptive‏‎ (20:16, 20 July 2012)
  176. Filters (Spatial) Anisotropic Diffusion‏‎ (20:21, 20 July 2012)
  177. Extract Brain: Extract Brain Surface (BSE)‏‎ (20:48, 20 July 2012)
  178. Cropping images‏‎ (20:54, 24 July 2012)
  179. DICOM Conformance‏‎ (12:33, 26 July 2012)
  180. Working with DICOM Images‏‎ (13:05, 26 July 2012)
  181. Browsing DICOM images‏‎ (13:06, 26 July 2012)
  182. Sending and retrieving DICOM images‏‎ (13:07, 26 July 2012)
  183. Testing the connection‏‎ (13:08, 26 July 2012)
  184. Posing queries and retrieving images‏‎ (13:08, 26 July 2012)
  185. Receiving and sending image files‏‎ (13:10, 26 July 2012)
  186. Displaying and editing DICOM tag information‏‎ (13:11, 26 July 2012)
  187. Protecting patient privacy using Anonymize‏‎ (13:12, 26 July 2012)
  188. Filters (Spatial): Slice Averaging‏‎ (18:43, 27 July 2012)
  189. Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency‏‎ (16:53, 31 July 2012)
  190. Watershed‏‎ (14:07, 6 August 2012)
  191. Morphology‏‎ (14:13, 6 August 2012)
  192. Examples of BSpline registration‏‎ (11:56, 7 August 2012)
  193. Histogram Cumulative‏‎ (15:13, 7 August 2012)
  194. Quantify Mask‏‎ (13:00, 9 August 2012)
  195. Image Math‏‎ (13:04, 9 August 2012)
  196. Matching images‏‎ (13:08, 9 August 2012)
  197. Masking (filling) images‏‎ (13:39, 9 August 2012)
  198. Replacing pixel/voxel value in images‏‎ (13:49, 9 August 2012)
  199. Using Scripts (Macros) in MIPAV‏‎ (14:00, 9 August 2012)
  200. Converting non-DICOM image files to DICOM format‏‎ (16:04, 9 August 2012)
  201. Running scripts‏‎ (16:45, 9 August 2012)
  202. Adding noise to images‏‎ (16:53, 9 August 2012)
  203. Filters (Spatial) Laplacian‏‎ (17:20, 9 August 2012)
  204. Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools‏‎ (19:42, 9 August 2012)
  205. Segmenting Images Using Contours and Masks‏‎ (19:44, 9 August 2012)
  206. Subtract VOI Background‏‎ (19:47, 9 August 2012)
  207. Why can't I see the plugins I install in the menu?‏‎ (12:11, 13 August 2012)
  208. Shading Correction: Inhomogeneity N3 Correction‏‎ (14:09, 13 August 2012)
  209. Filters (Spatial): Nonmaximum Suppression‏‎ (14:49, 21 August 2012)
  210. Converting image datasets to different data types‏‎ (12:07, 22 August 2012)
  211. Filters (Wavelet): Thresholding‏‎ (12:18, 22 August 2012)
  212. NEIRetinalRegistration‏‎ (13:06, 28 August 2012)
  213. 4 D tools‏‎ (19:11, 5 September 2012)
  214. Inserting slices into image datasets‏‎ (16:28, 18 September 2012)
  215. Changing Image Datasets Using MIPAV Utilities‏‎ (18:29, 18 September 2012)
  216. Swap slices and swap volumes‏‎ (15:19, 19 September 2012)
  217. Slice tools‏‎ (15:21, 19 September 2012)
  218. Flipping images‏‎ (20:06, 21 September 2012)
  219. Map IDs‏‎ (19:39, 26 September 2012)
  220. Histogram‏‎ (14:31, 3 October 2012)
  221. Transformation matrix‏‎ (12:35, 24 October 2012)
  222. Optimized automatic registration 3D‏‎ (16:34, 2 November 2012)
  223. Transform nonlinear‏‎ (17:39, 7 November 2012)
  224. Load and save profile‏‎ (18:10, 7 November 2012)
  225. Contributing code to MIPAV‏‎ (21:46, 4 December 2012)
  226. Main Page‏‎ (21:48, 4 December 2012)
  227. Transform to power of 2‏‎ (15:27, 2 January 2013)
  228. Segmenting Images Using Contours and Masks: Using contours to segment a VOI‏‎ (21:00, 20 February 2013)
  229. Introducing MIPAV‏‎ (12:52, 11 March 2013)
  230. Using the mipav command‏‎ (16:19, 12 March 2013)
  231. Image Calculator: Advanced image calculator options‏‎ (19:34, 27 March 2013)
  232. Filters (Spatial): Median‏‎ (19:38, 27 March 2013)
  233. Threshold‏‎ (19:43, 28 March 2013)
  234. Supported file formats‏‎ (18:18, 29 March 2013)
  235. Prostate segmentation and surface reconstruction‏‎ (19:27, 2 April 2013)
  236. MIPAV change list 5.x.x‏‎ (20:42, 5 April 2013)
  237. MIPAV change list‏‎ (16:08, 8 April 2013)
  238. MIPAV feature list‏‎ (15:11, 25 April 2013)
  239. Autocorrelation Coefficients‏‎ (15:16, 25 April 2013)
  240. Autocovariance Coefficients‏‎ (15:17, 25 April 2013)
  241. Transform: Conformal Mapping Algorithms‏‎ (15:18, 25 April 2013)
  242. Hough Transform‏‎ (15:18, 25 April 2013)
  243. Filters (Wavelet): De-noising BLS GSM‏‎ (15:19, 25 April 2013)
  244. Cumulative Histogram‏‎ (15:19, 25 April 2013)
  245. Muscle Segmentation‏‎ (15:19, 25 April 2013)
  246. DTI: Create List File‏‎ (15:50, 25 April 2013)
  247. Transform‏‎ (15:51, 25 April 2013)
  248. Correcting image spacing‏‎ (14:17, 7 May 2013)
  249. Filters (Spatial): Nonlinear Noise Reduction‏‎ (19:01, 8 May 2013)
  250. Customizing MIPAV‏‎ (20:34, 8 May 2013)

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