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=[[Preface]]=
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== [[Preface]] ==
 
*[[Scope of this guide]]
 
*[[Scope of this guide]]
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*[[Who should use this guide]]
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*[[Skills you need to perform tasks in MIPAV]]
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== Recent changes in documentation ==
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*[[How this guide is organized]]
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−
**[[Volume 1, Basics]]
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This section is reflects the recent changes in documentation. It is mostly for Olga to help her tracking changes. Please don't pay any special attention to it.
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**[[Volume 2, Algorighms]]
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−
*[[Where to find more information]]
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{{Special:RecentChanges/limit=10, hideminor, hidebots, hideliu}}
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*[[Conventions used in this guide]]
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−
=Volume 1: Chapters=
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== Getting Started Quickly with MIPAV ==
 
<ol type="1"><li  value="1">[[Introducing MIPAV]]
 
<ol type="1"><li  value="1">[[Introducing MIPAV]]
−
<li  value="2">[[Installing MIPAV]]
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**[[Introducing MIPAV#MipavPlatformIndependence | Platform Independence]]
 +
**[[Introducing MIPAV#MipavCapabilities | Understanding MIPAV capabilities]]
 +
**[[Introducing MIPAV#JavaPlugIns | Extensibility with Java plug-ins]]
 +
**[[Introducing MIPAV#MipavFeatures | Sampling of MIPAV's features]]
 +
*[[MIPAV mailing list]]
 +
*[[Installing mipav#MipavNews|Viewing MIPAV News and Updates]]
 +
 
 +
*[[Supported Formats]]
 +
**[[Supported Formats | Graphical and file formats supported by MIPAV]]
 +
**[[Image formats descriptions | Image formats' descriptions]]
 +
**[[MIPAV configuration files]]
 +
**[[FAQ: Understanding Image Basics#FilesExtensions | Image files supported by MIPAV]]
 +
 
 +
<li  value="2">[[Installing mipav|Installing MIPAV]]
 +
*[[MIPAV system requirements]]
 +
*[[Installing mipav|Installing MIPAV]]
 +
*[[Installing mipav#MipavUpgrade|Upgrading MIPAV]]
 +
*[[Installing mipav#MipavUninstall|Uninstalling MIPAV]]
 +
*[[Quitting MIPAV]]
 +
 
 
<li  value="3">[[Getting Started Quickly with MIPAV]]
 
<li  value="3">[[Getting Started Quickly with MIPAV]]
 +
*[[Getting Started Quickly with MIPAV#StartingMIPAV | Starting MIPAV]]
 +
*[[Getting Started Quickly with MIPAV#StartingMIPAV | MIPAV main window]]
 +
*[[Getting Started Quickly with MIPAV#ManagingMemoryResources | Managing memory in MIPAV]]
 +
*[[Allocating Memory in MIPAV]]
 +
*[[Opening and loading image files]]
 +
*[[MIPAV toolbars]]
 +
*[[Displaying MIPAV Toolbars]]
 +
*[[Displaying images]]
 +
**[[Displaying images#DefaultView| Default View]]
 +
**[[Displaying images#LightboxView| Lightbox View]]
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**[[Displaying images#CineView| Cine View]]
 +
**[[Displaying images#AdjustingMagnification| Adjusting Magnification]]
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**[[Displaying images#MagnifyingRegions| Magnifying Regions within Images]]
 +
**[[Displaying images#ImprovingContrast| Improving Image Contrast]]
 +
*[[Modifying image resolutions]]
 +
 +
*[[Changing Image Contrast]]
 +
**[[Changing Image Contrast|Adjust Window and Level]]
 +
**[[Changing Image Contrast|Improving contrast by generating and modifying histograms]]
 +
**[[Changing Image Contrast|Using Lookup Table dialog box]]
 +
**[[Changing Image Contrast#PredefinedLuts|Applying color to images using predefined LUTs]]
 +
**[[Changing Image Contrast|Comparing images using alphablending]]
 +
**[[Changing Image Contrast|Restoring images to their original appearance]]
 +
 +
*[[Creating new images]]
 +
**[[Creating new images| Image dialog box]]
 +
**[[Creating new images| Annotating images with text]]
 +
 +
*[[Saving and printing images]]
 +
 +
*[[Delineating volumes of interest (VOIs)| Volumes of Interest]]
 +
**[[Delineating volumes of interest (VOIs)]] 
 +
**[[Calculating VOI statistics]]
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**[[Calculating VOI statistics#VoiStatistics| VOI statistics dialog box]]
 +
**[[Reviewing VOI statistics]]
 +
**[[Calculating statistics on VOI groups]]
 +
**[[Reviewing VOI statistics|Generating graphs (intensity profiles)]] 
 +
 +
*[[ImageJ | Working with ImageJ]]
 +
*[[Customizing MIPAV]]
 +
**[[Customizing MIPAV#MipavOptions | MIPAV Options dialog box]]
 +
**[[Customizing MIPAV#SplashScreen | Showing and hiding the splash screen on start-up]]
 +
**[[Customizing MIPAV#DebuggingMipav | Debugging MIPAV]]
 +
**[[Customizing MIPAV#ActionsHistory | Saving a history of actions on images]]
 +
**[[Customizing MIPAV#DefaultFileTypes | Choosing the default file types to display or save]]
 +
**[[Customizing MIPAV#AddingShortcuts | Adding Shortcuts]]
 +
**[[MIPAV configuration files]]
 +
 +
*[[Developing new tools using the API]]
 +
 +
*[[Technical Support | Contacting MIPAV support]]
 +
*[[MIPAV mailing list | Joining MIPAV mailing list]]
 +
 +
== MIPAV Basics ==
 
<li  value="4">[[Understanding Image Basics]]
 
<li  value="4">[[Understanding Image Basics]]
 +
 
<li  value="5">[[Working with DICOM Images]]
 
<li  value="5">[[Working with DICOM Images]]
−
<li  value="6">[[Connecting to SRB BIRN]]
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*[[Browsing DICOM images|Browsing DICOM images]]
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<li  value="7">[[Visualizing Images]]
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*[[Sending and retrieving DICOM images|Sending and retrieving DICOM images ]]
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<li  value="8">[[Segmenting Images Using Contours and Masks]]
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*[[Testing the connection|Testing the connection ]]
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<li  value="9">[[Analyzing Images]]
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*[[Posing queries and retrieving images|Posing queries and retrieving images]]
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<li  value="10">[[Changing Image Datasets Using MIPAV Utilities]]
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*[[Receiving and sending image files|Receiving and sending image files]]
−
<li  value="11">[[Using Scripts (Macros) in MIPAV]]
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*[[Displaying and editing DICOM tag information|Displaying and editing DICOM tag information]]
−
<li  value="12">[[Developing Plugin Programs]]</ol>
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*[[Protecting patient privacy using Anonymize|Protecting patient privacy using Anonymize]]
−
=Volume 2: MIPAV Algorithms=
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*[[Converting non-DICOM image files to DICOM format|Converting non-DICOM image files to DICOM format]]
 +
 
 +
<li  value="6">[[Visualizing Images]]
 +
*[[Visualizing Images: Displaying images using the default view |Displaying images using the default view]]
 +
**[[Visualizing Images:Displaying images using the default view: Magnifying and minifying images|Magnifying and minifying images]]
 +
**[[Visualizing Images: Displaying images using the default view: Viewing two images together|Viewing two images together]]
 +
**[[Visualizing Images: Displaying images using the default view:Changing image brightness and contrast using LUTs|Changing image brightness and contrast using LUTs]]
 +
*[[Visualizing Images: Displaying images using the animate view |Displaying images using the animate view]]
 +
*[[Visualizing Images: Displaying images using the cine (movie) view|Displaying images using the cine (movie) view]]
 +
*[[Visualizing Images: Displaying images using the lightbox view |Displaying images using the lightbox view]]
 +
*[[Visualizing Images: Displaying images using the link to another image view|Displaying images using the link to another image view]]  
 +
*[[Visualizing Images: Displaying images using the triplanar view|Displaying images using the triplanar view]]  
 +
*[[Visualizing Images: Displaying images using the triplanar-dual view|Displaying images using the triplanar-dual view]]
 +
*[[Visualizing Images: Displaying images using the surface plotter view|Displaying images using the surface plotter view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the surface renderer view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the volume shear view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the volume renderer view]]
 +
 
 +
<li  value="7">[[Segmenting Images Using Contours and Masks]]
 +
*[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI|Using contours to segment a VOI]]
 +
**[[Modifying Contours]]
 +
*[[Segmenting Images Using Contours and Masks: Generating Masks|Generating masks]]
 +
**[[Creating a mask using the Paint Grow Segmentation method]]
 +
*[[Segmenting Images Using Contours and Masks:Converting VOI contours to masks|Converting VOI contours to masks]]
 +
*[[Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints |Converting masks to VOI contours and paints]]
 +
*[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools|Advanced Paint and Power Paint tools]]
 +
 
 +
<li  value="8">[[Analyzing Images]]
 +
*[[Analyzing Images|Calculating statistics for contoured VOIs ]]
 +
*[[Calculating statistics on VOI groups|Calculating statistics on VOI groups]]
 +
*[[Calculating the volume of masks|Calculating the volume of masks ]]
 +
*[[Generating graphs|Generating graphs]]
 +
**[[Customizing the appearance of graphs - Modify graph dialog box]]
 +
**[[Changing the legends for functions]]
 +
 
 +
<li  value="9">[[Changing Image Datasets Using MIPAV Utilities]]
 +
*[[Standard tasks provided through commands on the Utilities menu]]
 +
*[[Recording utilities usage with the history feature]]
 +
*[[4 D tools]]
 +
*[[Adding image margins]]
 +
*[[Copying images using the Clone command]]
 +
*[[Converting image datasets to different data types]]
 +
*[[Correcting image spacing]]
 +
*[[Cropping images]]
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*[[Masking (filling) images]]
 +
*[[Flipping images]]
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*[[Image Calculator]]
 +
**[[Image Calculator: OR]]
 +
**[[Image Calculator: Advanced image calculator options]]
 +
*[[Image Math]]
 +
*[[Inserting slices into image datasets]]
 +
*[[Inverting the image]]
 +
*[[Matching images]]
 +
*[[Maximum Intensity Projection]]
 +
*[[Adding noise to images]]
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*[[Pad]]
 +
*[[Quantify Mask]]
 +
*[[Replacing pixel/voxel value in images]]
 +
*[[Rotating images]]
 +
*[[Slice tools]]
 +
*[[Inserting slices into image datasets]]
 +
*[[Subtract VOI Background]]
 +
*[[Standard tasks provided through commands on the Utilities menu]]
 +
 
 +
<li  value="10">[[Using Scripts (Macros) in MIPAV]]
 +
*[[Developing and using scripts]]
 +
**[[Setting up scripting]]
 +
**[[Planning scripts]]
 +
**[[Recording scripts]]
 +
**[[Running scripts]]
 +
**[[Editing and deleting scripts]]
 +
**[[Examples]]
 +
*[[Combining scripts and other programs]]
 +
**[[Using the mipav command]]
 +
**[[Using Shell scripting to lessen typing]]
 +
 
 +
<li  value="11">[[Developing Plugin Programs]]
 +
*[[Understanding plug-in programs]]
 +
*[[Using the API documentation]]
 +
*[[Developing plug-in programs]]
 +
*[[Creating a self-contained plug-in frame]]
 +
*[[Examples of MIPAV plug-ins]]
 +
**[[Plug-in CT_MD, a typical plug-in program]]
 +
***[[PlugInAlgorithmCT_MD.java]]
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***[[Plug-in CT_MD.java]]
 +
 
 +
<li  value="12">[[Technical Support]]</ol>
 +
 
 +
== MIPAV Algorithms ==
 
*[[Understanding MIPAV capabilities]]
 
*[[Understanding MIPAV capabilities]]
−
**[[Understanding MIPAV capabilities]]
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*[[Developing new tools using the API]]
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**[[Developing new tools using the API]]
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*[[Using MIPAV Algorithms | Overview of MIPAV Algorithms]]
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*[[Using MIPAV Algorithms]]
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**[[Cost functions used in MIPAV algorithms]]
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**[[B-Spline Automatic Registration]]
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**[[Interpolation methods used in MIPAV]]
 +
**[[Degrees of freedom]]
 +
<div id="AutoCorrelation"></div>
 +
**[[Autocorrelation Coefficients]]
 +
**[[Autocovariance Coefficients]]
 +
**[[Barrel Distortion Correction]]
 +
<div id="DtiAlgorithms"></div>
 
**[[DTI Color Display]]
 
**[[DTI Color Display]]
 +
**[[DTI Estimate tensor | DTI Estimate tensor - under construction]]
 +
**[[DTI Pipeline]]
 +
<div id="EdgeDetection"></div>
 
**[[Edge Detection: Zero X Laplacian]]
 
**[[Edge Detection: Zero X Laplacian]]
 
**[[Edge Detection: Zero X Non-Maximum Suppression]]
 
**[[Edge Detection: Zero X Non-Maximum Suppression]]
 +
<div id="ExtractSurface"></div>
 
**[[Extract Brain: Extract Brain Surface (BET)]]
 
**[[Extract Brain: Extract Brain Surface (BET)]]
 
**[[Extract Brain: Extract Brain Surface (BSE)]]
 
**[[Extract Brain: Extract Brain Surface (BSE)]]
 +
**[[Extract Surface (Marching Cubes)]]
 
**[[Face Anonymizer (BET)]]
 
**[[Face Anonymizer (BET)]]
 +
<div id="FilterAlgorithms"></div>
 
**[[Fast Fourier Transformation (FFT)]]
 
**[[Fast Fourier Transformation (FFT)]]
 
**[[Filters (Spatial): Adaptive Noise Reduction]]
 
**[[Filters (Spatial): Adaptive Noise Reduction]]
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**[[Filters (Spatial): Gaussian Blur]]
 
**[[Filters (Spatial): Gaussian Blur]]
 
**[[Filters (Spatial): Gradient Magnitude]]
 
**[[Filters (Spatial): Gradient Magnitude]]
 +
**[[Filters (Spatial): Haralick Texture]]
 
**[[Filters (Spatial) Laplacian]]
 
**[[Filters (Spatial) Laplacian]]
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**[[Filters (Spatial) Local Normalization]]
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**[[Filters (Spatial): Local Normalization]]
 
**[[Filters (Spatial): Mean]]
 
**[[Filters (Spatial): Mean]]
 
**[[Filters (Spatial): Median]]
 
**[[Filters (Spatial): Median]]
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**[[Filters (Spatial): Slice Averaging]]
 
**[[Filters (Spatial): Slice Averaging]]
 
**[[Filters (Spatial): Unsharp Mask]]
 
**[[Filters (Spatial): Unsharp Mask]]
 +
**[[Filters (Wavelet): De-noising BLS GSM]]
 
**[[Filters (Wavelet): Thresholding]]
 
**[[Filters (Wavelet): Thresholding]]
 
**[[Fuzzy C-Means: Multispectral and Single Channel Algorithms]]
 
**[[Fuzzy C-Means: Multispectral and Single Channel Algorithms]]
 +
<div id="HistogramAlgorithms"></div>
 
**[[Histogram Equalization: Regional Adaptive]]
 
**[[Histogram Equalization: Regional Adaptive]]
 
**[[Histogram Equalization: Neighborhood Adaptive]]
 
**[[Histogram Equalization: Neighborhood Adaptive]]
 
**[[Histogram Matching]]
 
**[[Histogram Matching]]
 
**[[2D Histogram]]
 
**[[2D Histogram]]
 +
**[[Cumulative Histogram]]
 
**[[Histogram summary]]
 
**[[Histogram summary]]
 +
**[[Image Calculator]]
 
**[[Manual 2D Series]]
 
**[[Manual 2D Series]]
−
**[[Extract Surface (Marching Cubes)]]
 
 
**[[Mask]]
 
**[[Mask]]
 +
<div id="MicroscopyAlgorithms"></div>
 
**[[Microscopy Colocalization Orthogonal Regression]]
 
**[[Microscopy Colocalization Orthogonal Regression]]
 
**[[Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor]]
 
**[[Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor]]
 
**[[Microscopy: FRAP (Fluorescence Recovery After Photobleaching)]]
 
**[[Microscopy: FRAP (Fluorescence Recovery After Photobleaching)]]
 +
**[[Microscopy: Fluorescent Resonance Energy Transfer (FRET) Bleed Through and Efficiency]]
 
**[[Microscopy: Blind Deconvolution]]
 
**[[Microscopy: Blind Deconvolution]]
 +
<div id="TransformationAlgorithms"></div>
 
**[[Midsagittal line alignment]]
 
**[[Midsagittal line alignment]]
 
**[[Morphology]]
 
**[[Morphology]]
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**[[Optimized automatic registration 3D]]
 
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**[[Registration: Landmark-Least Squares]]
 
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**[[Registration: Landmark-TPSpline]]
 
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**[[Registration: Manual 2D Series]]
 
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**[[Registration: Time Series Optimized Automatic Registration]]
 
 
**[[Reslice-Isotropic Voxels]]
 
**[[Reslice-Isotropic Voxels]]
 
**[[Shading Correction: Inhomogeneity N3 Correction]]
 
**[[Shading Correction: Inhomogeneity N3 Correction]]
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**[[Threshold]]
 
**[[Threshold]]
 
**[[Transform to power of 2]]
 
**[[Transform to power of 2]]
 +
<div id="RegistrationAlgorithms"></div>
 +
**[[B-Spline Automatic Registration | Registration: B-Spline Automatic Registration ]]
 +
***[[Detect folding]]
 +
***[[User Dialogs in MIPAV]]
 +
**[[Optimized automatic registration 3D | Registration: Optimized automatic registration 3D and 3.5D]]
 +
**[[Registration: Landmark-Least Squares]]
 +
**[[Registration: Landmark-TPSpline]]
 +
**[[Registration: Manual 2D Series]]
 +
**[[Midsagittal line alignment | Registration: Midsagittal line alignment]]
 +
**[[Reslice-Isotropic Voxels | Registration: Reslice-Isotropic Voxels]]
 +
**[[Registration: Time Series Optimized Automatic Registration]]
 +
**[[Volume Renderer]]
 +
 +
== Glossary ==
 +
[[Glossary for MIPAV Help]]
 +
 +
== Appendices ==
 +
<ol type="A"><li  value="1">[[References]]
 +
<li  value="B">[[DICOM Conformance]]
 +
<li  value="C">[[Supported Formats]]
 +
*[[Other formats supported by MIPAV ]]
 +
*[[Understanding MIPAV-related files]]
 +
 +
 +
<li  value="D">[[Technical Information]]
 +
<li  value="E"> [[PlugIn Algorithm Median]]
 +
*[[PlugIn Algorithm Median (con't, part 2)]]
 +
*[[PlugIn Algorithm Median (con't, part 3)]]
 +
*[[PlugIn Algorithm Median (con't, part 4)]]
 +
</ol>
  
−
=Glossary=
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== Talairach ==
−
{| width="331" align="right"
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*[[Introduction]]
−
|
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*[[Installing]]
 +
*[[Mapping Brains in Talairach Space]]
 +
**[[Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system]]
 +
**[[Task 2, Applying Talairach VOIs]]
 +
**[[Task 3, Segmenting the original image]]
 +
**[[Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image]]
 +
**[[Task 5, Copying Talairach VOIs to segmented images]]
 +
**[[Task 6, Calculating statistics on VOIs]]
 +
**[[Viewing the Talairach grid on Talairach images]]
  
−
|}
+
== Frequently Asked Questions (FAQs) ==
 +
*[[FAQ: Understanding Memory]]
 +
*[[FAQ: Customizing MIPAV]]
 +
*[[FAQ: Understanding Image Basics]]
 +
*[[FAQ: Understanding Changes in MIPAV]]
 +
*[[FAQ: Trimming VOIs]]
  
−
[[Image:wwplogo.gif|Put your logo here!]]
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== Videos ==
  
−
----
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*A video tutorial that explains how to load images into MIPAV and change the memory allocation - [http://www.youtube.com/embed/npSYWYJa530 play].
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<blockquote>
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<font size="1" color="#999999" face="verdana, arial, helvetica, sans-serif">''''''</font>
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*A video tutorial that explains how to do basic image display options - [http://www.youtube.com/watch?v=02vUrfSaGWE&feature=relmfu play].
  
−
</blockquote><blockquote><div style="margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: right; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''''<font color="#000000"> Glossary<br /></font>'''''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 6pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> This glossary defines all acronyms and selected terms used in this guide. <br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Numerics<br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> 2D<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Two dimensional.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> 3D<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Three dimensional.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> 4D<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Four dimensional.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> 5D<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Five dimensional.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> A <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> ACR<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> American College of Radiology. The ACR, in conjunction with National Electrical Manufacturers Association, developed the Digital Image Communication in Medicine standard.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> AE<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Application entity.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Analyze<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Unix-based medical-imaging display and analysis software developed by the Mayo Foundation. MIPAV allows researchers to process, analyze, and visualize Analyze-formatted image files on virtually any platform.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> API<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Application program interface. Pieces of code that are used to perform common tasks, such as generate a standard window frame. Software developers often incorporate these pieces of code into their programs. An API is analogous to a package of form letters; APIs reduce programming time because common functions have already been written.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> BMP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Windows Bitmap formatted files. BMP is the standard bitmap graphics file format that is used in the MS Windows environment.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> boolean<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> This data type refers to data that represents symbolic relationships between entities, such as those implied by the logical operators AND, NOT, and OR. Examples of valid boolean values are TRUE and FALSE.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> bytecode<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Compiled format for Java code. Bytecode is analogous to object code. When the Java program is written and compiled, the compiled program is written in bytecode. When you execute the bytecode program, it is interpreted by the platform-specific Java Virtual Machine, which serves as an interface between your platform and the platform-independent bytecode. Java bytecode can be ported to almost any platform and executed, provided the correct Java Virtual Machine has been installed.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> CIT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Center for Information Technology. CIT provides, coordinates, and manages information technology so that computational science at the National Institutes of Health is advanced.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> color 24<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Color 24 is commonly referred to as 24-bit color images. Full <span style="font-style: normal; font-weight: normal; text-transform: none; vertical-align: baseline"><u><font color="#000000">[rgb.htm RGB]</font></u></span> color requires that the intensities of three color components be specified for each and every pixel. It is common for each component intensity to be stored as an 8-bit integer, and so each pixel requires 24 bits to completely and accurately specify its color. Image formats that store a full 24 bits to describe the color of each and every pixel are therefore known as <span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: baseline"><font color="#000000">24-bit color images</font></span>. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> CR<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Computed radiography.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> C-STORE<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Composite Storage. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> CT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Computed Tomography.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> data type<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> A set of values from which a variable, constant, function, or expression may take its value. MIPAV accommodates the following data types: Boolean, Signed Byte, Unsigned Byte, Signed Short, Unsigned Short, Integer, Long, Float, Double, and Color 24. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> DCB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Division of Computational Bioscience. DCB is a research and development organization that provides engineering and computer science expertise to support biomedical research activities at the National Institutes of Health (NIH). DCB applies image processing and medical imaging technologies, high-performance parallel computing, high-speed networking, signal processing, state-of-the-art optical and electronic devices, bioinformatics, database technology, mathematical and statistical techniques, and modern hardware and software engineering principles to help solve biomedical research problems at NIH. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> DICOM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Digital Image Communication in Medicine. Standard protocol developed by the American College of Radiology (ACR) and National Electrical Manufacturers Association (NEMA). Specifies a standard method of communication between two devices. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Double<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 64-bit, data type. Double is a floating point data type that accommodates decimal values, up to 14 or 15 significant digits of accuracy. Valid values can range from -1.7 x 10<span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: super"><font color="#000000">308</font></span> to 1.7 x 10<span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: super"><font color="#000000">308</font></span>.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Endian<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Data organization strategy. Refers to the way computer processors store data in memory. Big-endian format stores the most significant byte (MSB) first. Little-endian format stores the least significant byte (LSB) first.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> FF<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Feet first.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Float<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 32-bit, data type. Float is a floating point data type that accommodates decimal values, up to 6 or 7 significant digits of accuracy. Valid values can range from -3.4 x 10<span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: super"><font color="#000000">38</font></span> to 3.4 x 10<span style="font-style: normal; font-weight: normal; text-decoration: none; text-transform: none; vertical-align: super"><font color="#000000">38</font></span>.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> FTP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> File Transfer Protocol.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> GIF<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Graphic Interchange Format. A compressed, bit mapped, graphics file format that supports color and various resolutions.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> GUI<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Graphical user interface. A user interface that is based on graphics rather than text.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> header offset<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Space reserved at the beginning of some graphic files that contain non-image data.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> HF<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Head First<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> HP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Hewlett-Packard.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> HSB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Hue Saturation Brightness. In this color model, hue is the color, saturation is the purity of the color; and brightness indicates the brightness or darkness of the color.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> ID<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Identifier.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> IE<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Information Entity. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> integer<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 32-bit, data type. Integer is sometimes abbreviated as int. Integer accommodates values that are whole numbers. Valid values range from -2,147,483,648 to 2,147,483,648.<br /></font></div><div style="font-style: normal; font-weight: normal; margin-bottom: 600pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> interlaced<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> A display technique that increases resolution. Half of the horizontal lines are drawn on the monitor during the first pass; the other half are drawn during the second pass. For example, the odd numbered lines may be drawn during the first pass and the even numbered lines during the second pass.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> interpolation<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> The generation of intermediate values based on known values.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> IOD<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Information Object Definition<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> IOD<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Information Object Definition. Provides an abstract definition of real-world objects applicable to the communication of digital medical information.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> IP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Internet Protocol.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Java<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> High-level, object-oriented, platform-independent programming language developed by Sun Microsystems.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Java VM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Java Virtual Machine. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> JIT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Just-In-Time compiler. The JIT converts Java bytecode into machine language instructions. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> JPEG<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Joint Photographics Experts Group formatted files. Also refers to a compression type.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Linux<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> An operating system that is an open source implementation of UNIX. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Long<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 64-bit data type. Long is a variation of the integer data type. Long accommodates values that are whole numbers. Valid values range from -9,223,372,036,854,775,808 to 9,223,372,036,854,775,808.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> LSB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Least Significant Byte. Also see endian.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> LUT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Lookup Table.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Mac OS<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Macintosh Operating System<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Megabyte<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MIPAV<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Medical Image Processing, Analysis, and Visualization program. MIPAV is an n-dimensional, general-purpose, extensive image processing, and visualization program. It is platform-independent and assists researchers with extracting quantitative information from various medical imaging modalities.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MR<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Magnetic Resonance.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MSB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Most Significant Byte. See endian for more details.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MSEE<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Master of Science in Electrical Engineering<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> MTX<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for MIPAV's transform matrix files.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> NEMA<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> National Electrical Manufacturers Association. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> NIH<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> National Institutes of Health.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> NM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Nuclear medicine.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> OS<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Operating system<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PACS<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Picture Archiving System.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PCX<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for PC Paintbrush formatted graphic files.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PDU<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Protocol Data Unit.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PET<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Positron Emission Tomography.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PICT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Macintosh formatted graphic files.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PLT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for MIPAV's graphics files.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PNG<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Portable Network Graphic formatted graphic files.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> PSD<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Adobe Photoshop formatted graphic files.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> RAM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Random Access Memory<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Raster<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Bitmap file type. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Raw<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> File type.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> resolution<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> The sharpness and clarity of an image. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> RGB<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Red Green Blue.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> RIS<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> TBD.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> RLE (Run Length Encoding)<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> The file extension for graphics that have been reduced using run-length encoding. RLE is a compression method that converts consecutive identical characters into a code consisting of the character and the number marking the length of the run.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> ROI<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Region of Interest.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> RS<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Sun Raster formatted graphics files.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SCP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Service Class Provider.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SCU<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Service Class User.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SGI<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Silicon Graphics Incorporated.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> short<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 16-bit data type. Short is a variation of the integer data type. Short accommodates values that are whole numbers. Valid values range from 0 to 32,767.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> signed byte<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 8-bit, data type. Signed byte is a variation of the integer data type. The signed byte data type signifies that valid values fall within a range of whole numbers. Valid values range from -128 to 128. Negative values (indicated by the negative sign) are permitted, hence the term, signed byte.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> signed short<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 16-bit data type. Signed short is a variation of the integer data type. The signed short data type signifies that valid values fall within a range of whole numbers. Valid values range from -32,768 to 32,767. Negative values (indicated by the negative sign) are permitted, hence the term, signed short.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> Solaris<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Unix-based operating environment that was developed by Sun Microsystems. Solaris consists of the Sun operating system and a windowing system.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SOP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Service Object Pair<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SOP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Service Object Pair.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> SPECT<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> TBD.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> TCP/IP<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Transmission Control Protocol/Internet Protocol. The suite of communications protocols used to connect hosts on the Internet.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> TGA<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Truevision Graphics Adapter formatted graphics files.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> TIFF<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Extension for Tag Image File Format formatted graphics files.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> UID<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Unique Identifier.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> UNIX<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Multi-tasking, multi-user operating system developed by Bell Labs. Many versions of UNIX abound, including Linux. <br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> unsigned byte<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 8-bit, data type. Unsigned byte is a variation of the integer data type. The unsigned byte data type signifies that valid values must fall within a specified range of positive, whole-number values. Valid values range from 0 to 128. Negative values (indicated by the negative sign) are not valid, hence the term, unsigned byte.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> unsigned short<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Primitive, 16-bit data type. Unsigned short is a variation of the integer data type. The unsigned short data type signifies that valid values must fall within a specified range of positive, whole-number values. Valid values range from 0 to 32,767. Note that negative values (indicated by the negative sign) are not valid, hence the term, unsigned byte.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> US<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Ultrasound<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> VM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Virtual Machine.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> VOI<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Volume of interest (used interchangeably with ROI).<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> voxel<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> Smallest distinguishable cube-shaped part of a 3D image.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> XBM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> X BitMap file format.<br /></font></div><div style="font-style: normal; margin-bottom: 0pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> XPM<br /></font>'''</div><div style="font-style: normal; font-weight: normal; margin-bottom: 13pt; margin-left: 0pt; margin-right: 0pt; margin-top: 0pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline"><font color="#000000"> X PixMap file format.<br /></font></div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div><div style="font-style: normal; margin-bottom: 14pt; margin-left: 0pt; margin-right: 0pt; margin-top: 28pt; text-align: left; text-decoration: none; text-indent: 0pt; text-transform: none; vertical-align: baseline">'''<font color="#000000"> <br /></font>'''</div></blockquote>
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*A video tutorial that explains how to convert VOIs into binary masks that can be read by other programs such as Matlab or ImageJ. It also explains how to calculate statistics over VOIs - [http://www.youtube.com/watch?v=uCr-Zlxu454&feature=relmfu play].
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{| align="right"
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* A video tutorial that explains how to save and capture PDFs of images - [http://www.youtube.com/watch?v=Zfh5nKITbkA&feature=relmfu play].
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| align="right" | <font size="1"> [http://www.webworks.com [[Image:webworks.gif]]]<br /> Quadralay Corporation<br /> http://www.webworks.com<br /> Voice: (512) 719-3399<br /> Fax: (512) 719-3606<br />[mailto:sales@webworks.com sales@webworks.com]<br /></font>
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* A video tutorial that explains how to do basic image manipulations - [http://www.youtube.com/watch?v=uCr-Zlxu454&feature=relmfu play].
  
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All tutorials are courtesy of [http://www.youtube.com/user/MIPAVvideos MIPAVvideos].
  
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=Appendices=
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== Publications ==
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<ol type="1"><li  value="1">[[References]]
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* [[Publications]]
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<li  value="2">[[DICOM Conformance]]
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<li  value="3">[[Technical Information]]</ol>
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Latest revision as of 15:42, 12 June 2012

Preface

Recent changes in documentation

This section is reflects the recent changes in documentation. It is mostly for Olga to help her tracking changes. Please don't pay any special attention to it.

No changes during the given period matching these criteria.

Getting Started Quickly with MIPAV

  1. Introducing MIPAV
  2. Installing MIPAV
  3. Getting Started Quickly with MIPAV

    MIPAV Basics

  4. Understanding Image Basics
  5. Working with DICOM Images
  6. Visualizing Images
  7. Segmenting Images Using Contours and Masks
  8. Analyzing Images
  9. Changing Image Datasets Using MIPAV Utilities
  10. Using Scripts (Macros) in MIPAV
  11. Developing Plugin Programs
  12. Technical Support

MIPAV Algorithms

Glossary

Glossary for MIPAV Help

Appendices

  1. References
  2. DICOM Conformance
  3. Supported Formats
  4. Technical Information
  5. PlugIn Algorithm Median

Talairach

Frequently Asked Questions (FAQs)

Videos

  • A video tutorial that explains how to load images into MIPAV and change the memory allocation - play.
  • A video tutorial that explains how to do basic image display options - play.
  • A video tutorial that explains how to convert VOIs into binary masks that can be read by other programs such as Matlab or ImageJ. It also explains how to calculate statistics over VOIs - play.
  • A video tutorial that explains how to save and capture PDFs of images - play.
  • A video tutorial that explains how to do basic image manipulations - play.

All tutorials are courtesy of MIPAVvideos.

Publications

Retrieved from "http://mipav.cit.nih.gov/pubwiki/index.php?title=Wiki_help_testing&oldid=43142"