Difference between revisions of "Wiki help testing"
From MIPAV
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| − | =[[Preface]]= | + | == [[Preface]] == |
*[[Scope of this guide]] | *[[Scope of this guide]] | ||
| − | =MIPAV | + | == Getting Started Quickly with MIPAV == |
<ol type="1"><li value="1">[[Introducing MIPAV]] | <ol type="1"><li value="1">[[Introducing MIPAV]] | ||
*[[Introducing MIPAV]] | *[[Introducing MIPAV]] | ||
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*[[Technical Support | Contacting MIPAV support]] | *[[Technical Support | Contacting MIPAV support]] | ||
| + | == MIPAV Basics == | ||
<li value="4">[[Understanding Image Basics]] | <li value="4">[[Understanding Image Basics]] | ||
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<li value="12">[[Technical Support]]</ol> | <li value="12">[[Technical Support]]</ol> | ||
| − | = MIPAV | + | == MIPAV Algorithms == |
*[[Understanding MIPAV capabilities]] | *[[Understanding MIPAV capabilities]] | ||
**[[Understanding MIPAV capabilities]] | **[[Understanding MIPAV capabilities]] | ||
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**[[Transform to power of 2]] | **[[Transform to power of 2]] | ||
| − | =Glossary= | + | == Glossary == |
[[Glossary for MIPAV Help]] | [[Glossary for MIPAV Help]] | ||
| − | =Appendices= | + | == Appendices == |
<ol type="A"><li value="1">[[References]] | <ol type="A"><li value="1">[[References]] | ||
<li value="B">[[DICOM Conformance]] | <li value="B">[[DICOM Conformance]] | ||
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</ol> | </ol> | ||
| − | =Talairach= | + | == Talairach == |
*[[Introduction]] | *[[Introduction]] | ||
*[[Installing]] | *[[Installing]] | ||
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**[[Viewing the Talairach grid on Talairach images]] | **[[Viewing the Talairach grid on Talairach images]] | ||
| − | =Frequently Asked Questions (FAQ)= | + | == Frequently Asked Questions (FAQ) == |
*[[FAQ: Understanding Memory]] | *[[FAQ: Understanding Memory]] | ||
*[[FAQ: Customizing MIPAV]] | *[[FAQ: Customizing MIPAV]] | ||
*[[FAQ: Understanding Image Basics]] | *[[FAQ: Understanding Image Basics]] | ||
*[[FAQ: Understanding Changes in MIPAV]] | *[[FAQ: Understanding Changes in MIPAV]] | ||
Revision as of 20:03, 24 April 2012
Contents
Preface
Getting Started Quickly with MIPAV
- Introducing MIPAV
- Installing MIPAV
- Getting Started Quickly with MIPAV
- Allocating Memory in MIPAV
- Opening and loading image files
- MIPAV toolbars
- Displaying MIPAV Toolbars
- Displaying images
MIPAV Basics
- Understanding Image Basics
- Working with DICOM Images
- Visualizing Images
- Displaying images using the default view
- Displaying images using the animate view
- Displaying images using the cine (movie) view
- Displaying images using the lightbox view
- Displaying images using the link to another image view
- Displaying images using the triplanar view
- Displaying images using the triplanar-dual view
- Displaying images using the surface plotter view
- Displaying images using the surface renderer view
- Displaying images using the volume shear view
- Displaying images using the volume renderer view
- Segmenting Images Using Contours and Masks
- Analyzing Images
- Changing Image Datasets Using MIPAV Utilities
- Standard tasks provided through commands on the Utilities menu
- Recording utilities usage with the history feature
- 4 D tools
- Adding image margins
- Copying images using the Clone command
- Converting image datasets to different data types
- Correcting image spacing
- Cropping images
- Masking (filling) images
- Flipping images
- Image Calculator
- Image Math
- Inverting the image
- Matching images
- Maximum Intensity Projection
- Adding noise to images
- Pad
- Quantify Mask
- Replacing pixel/voxel value in images
- Rotating images
- Slice tools
- Inserting slices into image datasets
- Subtract VOI Background
- Standard tasks provided through commands on the Utilities menu
- Using Scripts (Macros) in MIPAV
- Developing Plugin Programs
- Technical Support
MIPAV Algorithms
- DTI Color Display
- Edge Detection: Zero X Laplacian
- Edge Detection: Zero X Non-Maximum Suppression
- Extract Brain: Extract Brain Surface (BET)
- Extract Brain: Extract Brain Surface (BSE)
- Face Anonymizer (BET)
- Fast Fourier Transformation (FFT)
- Filters (Spatial): Adaptive Noise Reduction
- Filters (Frequency)
- Filters (Spatial): Adaptive Path Smooth
- Filters (Spatial) Anisotropic Diffusion
- Filters (Spatial): Coherence-Enhancing Diffusion
- Filters (Spatial): Gaussian Blur
- Filters (Spatial): Gradient Magnitude
- Filters (Spatial) Laplacian
- Filters (Spatial) Local Normalization
- Filters (Spatial): Mean
- Filters (Spatial): Median
- Filters (Spatial): Mode
- Filters (Spatial): Nonlinear Noise Reduction
- Filters (Spatial): Nonmaximum Suppression
- Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion
- Filters (Spatial): Slice Averaging
- Filters (Spatial): Unsharp Mask
- Filters (Wavelet): Thresholding
- Fuzzy C-Means: Multispectral and Single Channel Algorithms
- Histogram Equalization: Regional Adaptive
- Histogram Equalization: Neighborhood Adaptive
- Histogram Matching
- 2D Histogram
- Histogram summary
- Manual 2D Series
- Extract Surface (Marching Cubes)
- Mask
- Microscopy Colocalization Orthogonal Regression
- Microscopy: Fluorescence Resonance Energy Transfer (FRET)-Acceptor
- Microscopy: FRAP (Fluorescence Recovery After Photobleaching)
- Microscopy: Blind Deconvolution
- Midsagittal line alignment
- Morphology
- Optimized automatic registration 3D
- Registration: Landmark-Least Squares
- Registration: Landmark-TPSpline
- Registration: Manual 2D Series
- Registration: Time Series Optimized Automatic Registration
- Reslice-Isotropic Voxels
- Shading Correction: Inhomogeneity N3 Correction
- Standard Deviation Threshold
- Subsampling images
- Threshold
- Transform to power of 2
Glossary
Appendices
Talairach
- Introduction
- Installing
- Mapping Brains in Talairach Space
- Task 1, Performing a semimanual transformation on datasets to the Talairach coordinate system
- Task 2, Applying Talairach VOIs
- Task 3, Segmenting the original image
- Task 4, Transforming Talairach image and Talairach VOIs-1 to the original image
- Task 5, Copying Talairach VOIs to segmented images
- Task 6, Calculating statistics on VOIs
- Viewing the Talairach grid on Talairach images
