Difference between revisions of "Wiki help testing"

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=Volume 1: Chapters=
 
=Volume 1: Chapters=
 
<ol type="1"><li  value="1">[[Introducing MIPAV]]
 
<ol type="1"><li  value="1">[[Introducing MIPAV]]
 +
*[[Understanding MIPAV capabilities]]
 +
*[[Developing new tools using the API]]
 +
 
<li  value="2">[[Installing MIPAV]]
 
<li  value="2">[[Installing MIPAV]]
 +
 
<li  value="3">[[Getting Started Quickly with MIPAV]]
 
<li  value="3">[[Getting Started Quickly with MIPAV]]
 +
*[[Allocating Memory in MIPAV]]
 +
*[[Allocating Memory in MIPAV|Opening and loading image files]]
 +
*[[MIPAV toolbars]]
 +
*[[Displaying MIPAV Toolbars]]
 +
*[[Displaying images using the default view]]
 +
*[[Using the right mouse button]]
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*[[Using the right mouse button|Selecting views]]
 +
*[[Using the right mouse button|Adjusting magnification]]
 +
*[[Using the right mouse button|Improving contrast, adding color, etc.]]
 +
*[[Using the right mouse button|Comparing images using alphablending]]
 +
*[[Creating new images]]
 +
*[[Creating new images|Delineating volumes of interest (VOIs)]]
 +
*[[Creating new images|Annotating images with text]] 
 +
*[[Creating new images|Calculating VOI statistics]]
 +
*[[Reviewing the statistics]]
 +
*[[Reviewing the statistics|Generating graphs (intensity profiles)]] 
 +
*[[Reviewing the statistics|Saving and printing images]]
 +
*[[Customizing MIPAV]]
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*[[To show the splash screen]]
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*[[Choosing the default file types to display or save]]
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*[[Choosing the default file types to display or save|Quitting MIPAV]]
 +
 
<li  value="4">[[Understanding Image Basics]]
 
<li  value="4">[[Understanding Image Basics]]
 +
 
<li  value="5">[[Working with DICOM Images]]
 
<li  value="5">[[Working with DICOM Images]]
 +
*[[Browsing DICOM images|Browsing DICOM images]]
 +
*[[Sending and retrieving DICOM images|Sending and retrieving DICOM images ]]
 +
*[[Testing the connection|Testing the connection ]]
 +
*[[Posing queries and retrieving images|Posing queries and retrieving images]]
 +
*[[Receiving and sending image files|Receiving and sending image files]]
 +
*[[Displaying and editing DICOM tag information|Displaying and editing DICOM tag information]]
 +
*[[Protecting patient privacy using Anonymize|Protecting patient privacy using Anonymize]]
 +
*[[Converting non-DICOM image files to DICOM format|Converting non-DICOM image files to DICOM format]]
 +
 
<li  value="6">[[Visualizing Images]]
 
<li  value="6">[[Visualizing Images]]
 +
*[[Visualizing Images: Displaying images using the default view |Displaying images using the default view]]
 +
*[[Visualizing Images: Displaying images using the animate view |Displaying images using the animate view]]
 +
*[[Visualizing Images: Displaying images using the cine (movie) view|Displaying images using the cine (movie) view]]
 +
*[[Visualizing Images: Displaying images using the lightbox view |Displaying images using the lightbox view]]
 +
*[[Visualizing Images: Displaying images using the link to another image view|Displaying images using the link to another image view]]
 +
*[[Visualizing Images: Displaying images using the triplanar view|Displaying images using the triplanar view]]
 +
*[[Visualizing Images: Displaying images using the triplanar-dual view|Displaying images using the triplanar-dual view]]
 +
*[[Visualizing Images: Displaying images using the surface plotter view|Displaying images using the surface plotter view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the surface renderer view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the volume shear view]]
 +
*[[Visualizing Images: Displaying images using the surface renderer view|Displaying images using the volume renderer view]]
 +
 
<li  value="7">[[Segmenting Images Using Contours and Masks]]
 
<li  value="7">[[Segmenting Images Using Contours and Masks]]
 +
*[[Segmenting Images Using Contours and Masks: Using contours to segment a VOI|Using contours to segment a VOI]]
 +
*[[Segmenting Images Using Contours and Masks: Generating Masks|Generating masks]]
 +
*[[Segmenting Images Using Contours and Masks:Converting VOI contours to masks|Converting VOI contours to masks]]
 +
*[[Segmenting Images Using Contours and Masks: Converting masks to VOI contours and paints |Converting masks to VOI contours and paints]]
 +
*[[Segmenting Images Using Contours and Masks: Advanced paint and Power Paint tools|Advanced Paint and Power Paint tools]]
 +
 
<li  value="8">[[Analyzing Images]]
 
<li  value="8">[[Analyzing Images]]
 +
*[[Analyzing Images|Calculating statistics for contoured VOIs ]]
 +
*[[Calculating statistics on VOI groups|Calculating statistics on VOI groups]]
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*[[Calculating the volume of masks|Calculating the volume of masks ]]
 +
*[[Generating graphs|Generating graphs]]
 +
**[[Customizing the appearance of graphs - Modify graph dialog box]]
 +
**[[Changing the legends for functions]]
 +
 
<li  value="9">[[Changing Image Datasets Using MIPAV Utilities]]
 
<li  value="9">[[Changing Image Datasets Using MIPAV Utilities]]
 +
*[[Standard tasks provided through commands on the Utilities menu]]
 +
*[[Recording utilities usage with the history feature]]
 +
*[[4 D tools]]
 +
*[[Adding image margins]]
 +
*[[Copying images using the Clone command]]
 +
*[[Converting image datasets to different data types]]
 +
*[[Correcting image spacing]]
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*[[Cropping images]]
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*[[Masking (filling) images]]
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*[[Flipping images]]
 +
*[[Image Calculator]]
 +
**[[Image Calculator: OR ]]
 +
**[[Image Calculator: Advanced image calculator options]]
 +
*[[Image Math]]
 +
*[[Inverting the image]]
 +
*[[Matching images]]
 +
*[[Maximum Intensity Projection]]
 +
*[[Adding noise to images]]
 +
*[[Pad]]
 +
*[[Quantify Mask]]
 +
*[[Replacing pixel/voxel value in images]]
 +
*[[Rotating images]]
 +
*[[Slice tools]]
 +
*[[Inserting slices into image datasets]]
 +
*[[Subtract VOI Background]]
 +
*[[Standard tasks provided through commands on the Utilities menu]]
 +
 
<li  value="10">[[Using Scripts (Macros) in MIPAV]]
 
<li  value="10">[[Using Scripts (Macros) in MIPAV]]
 +
*[[Developing and using scripts]]
 +
**[[Setting up scripting]]
 +
**[[Planning scripts]]
 +
**[[Recording scripts]]
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**[[Running scripts]]
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**[[Editing and deleting scripts]]
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**[[Examples]]
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*[[Combining scripts and other programs]]
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**[[Using the mipav command]]
 +
**[[Using Shell scripting to lessen typing]]
 +
 
<li  value="11">[[Developing Plugin Programs]]
 
<li  value="11">[[Developing Plugin Programs]]
 +
*[[Understanding plug-in programs]]
 +
*[[Using the API documentation]]
 +
*[[Developing plug-in programs]]
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*[[Creating a self-contained plug-in frame]]
 +
*[[Examples of MIPAV plug-ins]]
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**[[Plug-in CT_MD, a typical plug-in program]]
 +
***[[PlugInAlgorithmCT_MD.java]]
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***[[Plug-in CT_MD.java]]
 +
 
<li  value="12">[[Technical Support]]</ol>
 
<li  value="12">[[Technical Support]]</ol>
  

Revision as of 20:41, 8 March 2012

Preface

Volume 1: Chapters

  1. Introducing MIPAV
  2. Installing MIPAV
  3. Getting Started Quickly with MIPAV
  4. Understanding Image Basics
  5. Working with DICOM Images
  6. Visualizing Images
  7. Segmenting Images Using Contours and Masks
  8. Analyzing Images
  9. Changing Image Datasets Using MIPAV Utilities
  10. Using Scripts (Macros) in MIPAV
  11. Developing Plugin Programs
  12. Technical Support

Volume 2: MIPAV Algorithms

Glossary

Glossary for MIPAV Help

Appendices

  1. References
  2. DICOM Conformance
  3. Supported Formats
  4. Technical Information
  5. PlugIn Algorithm Median

Talairach

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