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1. 2D Histogram
2. 3-D Surface Views
3. 4 D tools
4. Adding image margins
5. Adding noise to images
6. Algorithms used to draw VOI
7. Allocating Memory in MIPAV
8. Analyzing Images
9. Autocorrelation Coefficients
10. Autocovariance Coefficients
11. Automatic de-Skulling
12. B-Spline Automatic Registration
13. B-Spline Automatic Registration Dialog box
14. BSpline registration: Detecting folding
15. Background
16. Barrel Distortion Correction
17. Browsing DICOM images
18. Building and compiling plug-in programs
19. Calculating VOI statistics
20. Calculating statistics on VOI groups
21. Calculating the volume of masks
22. Changing Image Contrast
23. Changing Image Datasets Using MIPAV Utilities
24. Changing the legends for functions
25. Combining scripts and other programs
26. Connecting to SRB BIRN
27. Contributing code to MIPAV
28. Conventions used in this guide
29. Converting image datasets to different data types
30. Converting non-DICOM image files to DICOM format
31. Copying images using the Clone command
32. Correcting image spacing
33. Cost functions used in MIPAV algorithms
34. Creating a mask using the Paint Grow Segmentation method
35. Creating a self-contained plug-in frame
36. Creating new images
37. Crontab notes
38. Cropping images
39. Cumulative Histogram
40. Customizing MIPAV
41. Customizing the appearance of graphs - Modify graph dialog box
42. DICOM Conformance
43. DTI: Create List File
44. DTI Color Display
45. DTI Estimate tensor
46. DTI Pipeline
47. DTI Pipeline Tutorials
48. DTI pipeline interface
49. Data Download module
50. Data Repository tools
51. Data Upload module
52. Data Validation module
53. Degrees of freedom
54. Delineating volumes of interest (VOIs)
55. Developing Plugin Programs
56. Developing and using scripts
57. Developing new tools using the API
58. Developing plug-in programs
59. Displaying MIPAV Toolbars
60. Displaying and editing DICOM tag information
61. Displaying images
62. Documentation of MIPAV contributions by Geometric Tools
63. Eclipse installation and configuration documentation
64. Edge Detection: Zero X Laplacian
65. Edge Detection: Zero X Non-Maximum Suppression
66. Editing and deleting scripts
67. Examples
68. Examples of BSpline registration
69. Examples of MIPAV plug-ins
70. Extract Brain: Extract Brain Surface (BET)
71. Extract Brain: Extract Brain Surface (BSE)
72. Extract Surface (Marching Cubes)
73. FAQ: Customizing MIPAV
74. FAQ: How can I fix a "Cannot load Java Virtual Machine" error (memory limit set too high)?
75. FAQ: How can I view the debugging output of MIPAV?
76. FAQ: How do I setup and use Active stereo display in MIPAV?
77. FAQ: Trimming VOIs
78. FAQ: Understanding Changes in MIPAV
79. FAQ: Understanding Image Basics
80. FAQ: Understanding Memory
81. FAQ: Why do I get an exception when running MIPAV via X11 forwarding on Linux?
82. Face Anonymizer (BET)
83. Fast Fourier Transformation (FFT)
84. Figure 1
85. Filters (Frequency)
86. Filters (Spatial): Adaptive Noise Reduction
87. Filters (Spatial): Adaptive Path Smooth
88. Filters (Spatial): Coherence-Enhancing Diffusion
89. Filters (Spatial): Gaussian Blur
90. Filters (Spatial): Gradient Magnitude
91. Filters (Spatial): Haralick Texture
92. Filters (Spatial): Kernel Regression
93. Filters (Spatial): Local Normalization
94. Filters (Spatial): Mean
95. Filters (Spatial): Median
96. Filters (Spatial): Mode
97. Filters (Spatial): Nonlinear Noise Reduction
98. Filters (Spatial): Nonmaximum Suppression
99. Filters (Spatial): Regularized Isotropic (Nonlinear) Diffusion
100. Filters (Spatial): Slice Averaging

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