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1. 2D Histogram
2. 3-D Surface Views
3. 4 D tools
4. Adding image margins
5. Adding noise to images
6. Algorithms used to draw VOI
7. Allocating Memory in MIPAV
8. Analyzing Images
9. Autocorrelation Coefficients
10. Autocovariance Coefficients
11. Automatic de-Skulling
12. B-Spline Automatic Registration
13. B-Spline Automatic Registration Dialog box
14. BSpline registration: Detecting folding
15. Background
16. Barrel Distortion Correction
17. Browsing DICOM images
18. Building and compiling plug-in programs
19. Calculating VOI statistics
20. Calculating statistics on VOI groups
21. Calculating the volume of masks
22. Changing Image Contrast
23. Changing Image Datasets Using MIPAV Utilities
24. Changing the legends for functions
25. Combining scripts and other programs
26. Connecting to SRB BIRN
27. Contributing code to MIPAV
28. Conventions used in this guide
29. Converting image datasets to different data types
30. Converting non-DICOM image files to DICOM format
31. Copying images using the Clone command
32. Correcting image spacing
33. Cost functions used in MIPAV algorithms
34. Creating a mask using the Paint Grow Segmentation method
35. Creating a self-contained plug-in frame
36. Creating new images
37. Crontab notes
38. Cropping images
39. Cumulative Histogram
40. Customizing MIPAV
41. Customizing the appearance of graphs - Modify graph dialog box
42. DICOM Conformance
43. DTI: Create List File
44. DTI Color Display
45. DTI Estimate tensor
46. DTI Pipeline
47. DTI Pipeline Tutorials
48. DTI pipeline interface
49. Data Download module
50. Data Repository tools

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